|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000401_pilon:216053..221254+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_014585 ID=XLOC_014585|Name=XLOC_014585|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5202bp|location=Sequence derived from alignment at sc0000401_pilon:216053..221254+ (Clytia hemisphaerica_ch_hm2_pilon)
atGCATCCGTTTGTCCGCCAGACAACAGTCACGTCCGCTTTCGGTCGCCA
GTCGACGTTTGATTTGCTTGATGATGAAGTGTTGTTAAGCACAGATGACA
AAAAACGCAGGAAAAGACTAAGTAAGAGTTACAGTTAATTACcctaagtg
gataaattttttcGAGTTGACCttttcagatgagatggagtttttataag
atactttaataattggtcatttgaagtagtAAAAATGgacacgttcttta
gaaaatgtaacaaaattgttttattactggttaacgaccaacgaaatcaa
ataagagcttgtagaAACTCCATCTCATCCCGACTTTTTCCACGAGTTGT
AAATTTCGCGTATTGATcactttttcaaatgtttctttcATTGCCCTGGG
AGTTTCGGCACAAATCctgaatttagaaattttagccAAGACTTTACTGT
GGCCTCTTACAAAGTCATATAGCACAGGGTTTTGACAAAAAGGACCATTC
ATTTACTTTTGTCACCTTCTTCAGCTCGTCGTGGTGTTTTGATTCTTATC
TTGGGATCATTCATTGTTCTTTGCGCTGCTGGAGGTCTGGGAACAATGGC
TTATTTCCATAAGAAGGCGTGGCACCGTGTGAAATACGTAAGAAATATTT
CTCCTTATTTTGATTGTTGCTCTTTCAAAGTTAAGTAATAACAATATACT
AAGAATATCACCGTCTTGGAGTTCGGCAACAGAACCTATGATTGCAATTT
TTAGTGTATTTTTAACCTGAAAATTGCCAATTACCACCCAAAAATCATAC
CAGTCTATATTCCGCCCTTAAGTGTTTTCACAATTCTTTATTAAGCCTTA
CTTTTAATGGCACCTTACagcctgaaaattgaaaaaaagtcttTCTCTAT
CATGTTGAGGTTCAGTCAAGGGCTGTCAAGTCATTATTTCTAATTTCTAC
TCGACTTAGTctattattctttttttataggGTCGCCTTGCAATGGTACT
AGATGCTTCACCAAATAACAATACAAAAATCACAATGCATTTGTACGAAT
TGTCGGCGAAAGACCGAATATCTGAAATTGATCAATCTGCATGTCAGGGT
ATGTACCCAAAATCAtcgtatacacgcttttttttttataagaatacact
ttataagaatgtccatgatgaaaatggccaaaaaattaagaatatgctaa
gaatatcaccatcatggaattttgagacgtatgtactaaatgttaaatat
agtctgaattaggatcctaacctaagaatgctgtaagaatattttaggat
gattttcccaaaaaagttaagaatatccatgatgaaatggatttacacca
ttcttataaaaaaaaaagcgtgtacgtcAGGGTTGTCTTGCAAGAAATCA
CAGTATTCTCATGACATTTTCTTGTTTCATTGAGCTCCAATTTTTGCATA
TTCTCACTATGtttttttCCTTTCTAAAGtaagaatattttgatgaatta
gtttcttcaaaagaagaagaaattgcgaAAGTCCCGACGGGTCCCTTATT
TTCTTACAGAAGCTCCCTTCGATTATTTCGAATAGGTTTCtgataaagat
tttttatttatggaatataaaatcatttttcaggTCTAAAACCTAAGCAT
ATTACCTTATGTATCAATCAAACGCTCAAAGATTATTCTGATATTGGTCC
TAAAATTCCGCTGCATGTGCTTTATAGAAAAGGTGCAAATGAAAGGTAAG
CTTCgttttttccattgttttgttccattgttttttAGAGTTGATGAATC
GATCGATCAATCAACCATCTAATATAAAAAACTGCACTACTTCTATAATA
TCCTACTGACCTTTATCCCTGGACCAAACTATGTCCGTCATCTTTGACCC
TGTATCACTGAATTCTTATCCGTGAAATGCTGTGGACGAAAAGTCACACA
AGGTTTATCTTTTGGGAAATTATCTTAGTAGAAAGTCTCAAtacaatgaa
aatattgtttctTTTCTAGTATGATGGCCTACTTTAAGGGGAATCTGACC
AATCAAATATCGCCACCAAGTTTTGAAGAAGTTGACGaaaacaaaaaact
gatttttctcTGGCTAATGATTTATCGAAATCTGAAATCGGTAGGTAATA
AAATCAATTAGCGGCTAGAGATTGAGGAACTGGGTACTGCAATGGCTGAT
CGCGAGCTGTGGAGGGAGGGCTATTGTTTGTTTCTGACCTGTCCATTTGG
ACCTAGATCAAAGGATGattatttaaattttacttGGTATTTCCAGCTAT
TTAGTTTAAATGAATAATTGCATTCACCTGATAGAAAAATACCAGAGCTT
TGAGCACGGGCTCAAAAAGAGGTATTCTTAAGACTCAAATTCTGCATTCT
TGTAATCTAAAAATGAAGCTCAAGCAAAAGTAGACTCTACAGCCattaac
ttatttttaaatgatttgtGCATCCGTTAGATGAGATTTTCTATTCAAGT
CAAAGAGTAGAGTAAAGTGCACACAAGTCTGCGTAGATTTCTTTTCGAGA
AAgatgttgaaaaatattgattgtTTTGTCAACATTATTGCCTTGGGAAT
GCAAGAATTCTTCTTCCCTTGCTGTTGTCTTTGTAAAACTTATATCCCAA
TTTTCTCAACCAgtattcaataaaaagttcattACTGCATTAACGTAGAG
AATATAATATGCTCAAAACACGAATCCTTTGAAATAAGAGCTagatacac
tacacaatatattgtcaggcaatatattgaaaaaggtgaccccggggggg
ggggtactacccttgtcgaccgacgggggtgctccgctaaggttcgaaaa
atggaccctacgtgggactcgaaatttgcgaaaaaagtgaccctgaatgg
gactgaaattccaaaattttctactttttccccaaattttccagaaatag
gcaccctacgagggactgatttttctattttggtgtttttgcgaccctac
ctgggactcgtggaggttaaaaagggtaccctgaccagcggagcatcccc
gtaacccattttgccctagtacccccccccccccgggaggtGACcccaat
atattgtcagctcgatttgcaatactTCAACAATACAggggattgtttac
aaaaagaaactttttttataataggGCACCTGTTGTATAcgtcgtacatt
acggtccgaaaacgattttgtcaaatattgttcgtcaatatattgtgtag
tctaattTAGCCCTATATGATCAATAGTGTACactttctttaaatttcta
AGCAAAtactagactatgctatagtcaaagacaaatcactatctaagaaa
taagcccggTGGAGccaaagaaaattcgcaaacgggtttttttgccgaaa
agaatTTGCAATCGGTAGTGTttgccagtcttcgaaactctcggcgattt
ttttcccgtataccgccatatACACCACATGCCTTTACTATACTactaca
gtgccgtagcaactgggggctatgcccccccccccaataattttttcaaa
aatagttattttgcaaaatgcaaagtttttcttttttaatttgtcataat
tgtcacaattgagttcattttcaagcaatctaaagctcaaattttcaaaa
tttgcccCCTCGggacaaaccatggttggccctcgcggtgtcactaaaca
ccccaatatggaaatgcttcctacggcactggtaCTATACTACCCAACAA
ATACTAACCTGACTCATCTCGTACTCAGGAAACTTGCACTACTTTTGTTA
CAATCATAAGAAGATTGAACTAAGGGGTAGGGTACTGTTTCTAGTCAAAA
AGCACGATTTATATTTTAGAAATCGTTTAACTTGTTTCGTACAACGAAAT
CATCAGTTGAATACGTAGGGGAGACGGTACCGTCAAACGGAACAGCAAAA
GACACGTTCACGGCGTCTGATGGAGTTGTTCTGACAAGCTTTAGAATACC
GAAAGAAGATATCTTCAACAAGCAGCGTTTAGTGTTGGTAAAGGTAAAta
cttatatattttttcataagaacatgcaatcatggttgaaatatattgag
aattcgggttattttaacgtttttcaagatttaaagttccggcgagaaag
tcgattttgggttatctctttaatttaatcaaatatttcaatttgggagg
ggttggcaaacttccaggctatattctgagccttattggactatttttga
acttttggatcttcagatcctaaggtcttaagtctagcgataaaactcag
agttaaaactctccccttcaaacctactttagagcacttacagaTGGATT
GTAGTTTCAAAAGTTCCCGGcgaatttccttttttctcaaatatgacctt
gattgtggcttcaatgaccaaaatattgaggataacttaagaacatttta
aggctttgcggattctaaaacattcaatttgttaggaaattactcaaaaa
tactcacaaaaaaggcgaaaataagaataattataagaacatttttttgc
ttaaagctaagaacatctgaaagcaaaaaacgtatactacaaaattaaaa
aacacttaaaatttatttcaacgttcagctaacgttatatggacacAGTC
AGGGGACGTcggaacaacgttgtgtgccgccCCCCTTACAATGGTCAATT
ATACTTAAGGCGTTTAACACGTTCAAATATTTTTACTCGGTGAAGGTAGA
AAATATTATAAACAACTCACCAAAAACTCGATTTTTACTCACTCAGTGGA
TATTGAACCTCCATTGGGAAAATGGTGATACGGGGTCCCATAGATTGACt
gaagttttcaattttcaccgaatgtaatgttttttatttaaaaatatacc
TGTAAACATCATACAAGATTTCTAATTTTCATATTCATCTTCAAGCCtca
gcaaaagtgatgacgtcatatggggaccagcaaaatggtcaaattttttc
tcaccactcgtttttataatttcttatagacctaattgatcatttaaaaa
agttagtttgcttggAACAAGTCTGCGCACACGAAGGATGTTTTCAGAGC
ATAGTGACTCTCGCTATTTGATTTGTGTATTTCTTTCTTCAGAGTTTCAA
TACAAATGAAAGCAATATAAACGATCCTTGCGGAGAAAAAGGATCAGTGA
AA Coding sequence (CDS) from alignment at sc0000401_pilon:216053..221254+ >XLOC_014585 ID=XLOC_014585|Name=XLOC_014585|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000401_pilon:216053..221254+ (Clytia hemisphaerica_ch_hm2_pilon)
atGCATCCGTTTGTCCGCCAGACAACAGTCACGTCCGCTTTCGGTCGCCA
GTCGACGTTTGATTTGCTTGATGATGAAGTGTTGTTAAGCACAGATGACA
AAAAACGCAGGAAAAGACTAAatGCATCCGTTTGTCCGCCAGACAACAGT
CACGTCCGCTTTCGGTCGCCAGTCGACGTTTGATTTGCTTGATGATGAAG
TGTTGTTAAGCACAGATGACAAAAAACGCAGGAAAAGACTAACTCGTCGT
GGTGTTTTGATTCTTATCTTGGGATCATTCATTGTTCTTTGCGCTGCTGG
AGGTCTGGGAACAATGGCTTATTTCCATAAGAAGGCGTGGCACCGTGTGA
AATACCTCGTCGTGGTGTTTTGATTCTTATCTTGGGATCATTCATTGTTC
TTTGCGCTGCTGGAGGTCTGGGAACAATGGCTTATTTCCATAAGAAGGCG
TGGCACCGTGTGAAATACgGTCGCCTTGCAATGGTACTAGATGCTTCACC
AAATAACAATACAAAAATCACAATGCATTTGTACGAATTGTCGGCGAAAG
ACCGAATATCTGAAATTGATCAATCTGCATGTCAGGgGTCGCCTTGCAAT
GGTACTAGATGCTTCACCAAATAACAATACAAAAATCACAATGCATTTGT
ACGAATTGTCGGCGAAAGACCGAATATCTGAAATTGATCAATCTGCATGT
CAGGgTCTAAAACCTAAGCATATTACCTTATGTATCAATCAAACGCTCAA
AGATTATTCTGATATTGGTCCTAAAATTCCGCTGCATGTGCTTTATAGAA
AAGGTGCAAATGAAAGgTCTAAAACCTAAGCATATTACCTTATGTATCAA
TCAAACGCTCAAAGATTATTCTGATATTGGTCCTAAAATTCCGCTGCATG
TGCTTTATAGAAAAGGTGCAAATGAAAGTATGATGGCCTACTTTAAGGGG
AATCTGACCAATCAAATATCGCCACCAAGTTTTGAAGAAGTTGACGaaaa
caaaaaactgatttttctcTGGCTAATGATTTATCGAAATCTGAAATCGT
ATGATGGCCTACTTTAAGGGGAATCTGACCAATCAAATATCGCCACCAAG
TTTTGAAGAAGTTGACGaaaacaaaaaactgatttttctcTGGCTAATGA
TTTATCGAAATCTGAAATCGAAATCGTTTAACTTGTTTCGTACAACGAAA
TCATCAGTTGAATACGTAGGGGAGACGGTACCGTCAAACGGAACAGCAAA
AGACACGTTCACGGCGTCTGATGGAGTTGTTCTGACAAGCTTTAGAATAC
CGAAAGAAGATATCTTCAACAAGCAGCGTTTAGTGTTGGTAAAGAAATCG
TTTAACTTGTTTCGTACAACGAAATCATCAGTTGAATACGTAGGGGAGAC
GGTACCGTCAAACGGAACAGCAAAAGACACGTTCACGGCGTCTGATGGAG
TTGTTCTGACAAGCTTTAGAATACCGAAAGAAGATATCTTCAACAAGCAG
CGTTTAGTGTTGGTAAAGAGTTTCAATACAAATGAAAGCAATATAAACGA
TCCTTGCGGAGAAAAAGGATCAGTGAAAAGTTTCAATACAAATGAAAGCA
ATATAAACGATCCTTGCGGAGAAAAAGGATCAGTGAAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401_pilon | genome | sc0000401_pilon:216053..221254 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 763-822:5143 |
| Aaloc | 676-762:3957 |
| Aaloc | 586-672:3870 |
| Aaloc | 466-585:2021 |
| Aaloc | 355-462:1636 |
| Aaloc | 235-351:981 |
| Aaloc | 124-234:527 |
| Aaloc | 1-120:1 |
|
