XLOC_014259 (mRNA) -

Overview
NameXLOC_014259
Unique NameXLOC_014259
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000366_pilon:187915..197700+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_014259 ID=XLOC_014259|Name=XLOC_014259|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9786bp|location=Sequence derived from alignment at sc0000366_pilon:187915..197700+ (Clytia hemisphaerica_ch_hm2_pilon)
AACACAATGGATACATCAGCTACAAAACCATCCATGGAAGAGGAGAATGA AACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGTAAGAG AgaactttgattttattttgcatGTTATTAACAGTGACCCTTATTGATCA TTCATCCAACGGACGACGTCTGGTTACTCTACCCTGCATTACAAAAGTAA CAAAAAGATCTTAAACATCATGCATGGCGTTCTTTAATTTACCTAGCAAG CGTGCAACAACTTCGATTTTTTGGGGCTCAATTCAACATTTCGACGtctc ttcaaaatttcaaaatgaaggAATATTTGGGTGAGAAAAGAAGCACGAAG ATAGACGAAAATCAACCATGGCACAAGTTTGGGAATTCGGGAGCTTGTTT GTTACTCCTACCTTTTACCTCCTTTTTTAGATTTAGAATGCCATGGTGAG TTTATGTTGAAAAGCTGTAACCTTTCAATAATTTACAGTGAAAAGTTCAA CCATAAGTTCATCGAAAACGTCAAGATGATTTCTTTTCGAACATTCTTCC GGTGTGTCTCTTGATGAAGTTGAAATTTCACGCAAAAAGTCATGGTCAAT CgttctaattttttcctgtaTCTTGACAATTTCAACCAGGGCCTTGATTT TATTTCTGAGTCTATCAAATACACATTTTTCTGGTTAgccgttttgtata agaagtcaccaaaatttcgagtaaacaaaccatcccattttagccaatga gatggtttgtttagtcgaaattttggtgactttttatacgagGCAGCTAT AAACcgtaaaaaggtgtattgtcaACTTTTCCACCATAGGCGATGTCCAT CATAAGAAGCAAGCCAGAGGGTGTGACATCAAAAGAATATGCTCAACAAC TCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGGTATAT TGATAGTTCAAATATGAAATATGTACCGGGTGACACGAAAATCCTTTATT ATAACATACTAGACGACTAATTCCGACTtatagaaaatcagtataaaaaT AATGCAAGGACATTGTAGTTAATACAAACTCATATTGTCCcgtaaaaatt atcaaactaTCATATAATAcacatattactgtattacactaATTAGAAAC GACTCCAGACTCCAGTCTAGCAGGGTAGCTGATGCCAAACAAAGTCTATA CTGAGCTAAGAATTACATTCATTGGAAAGAGGATGCGTAGCTTAGCTGCC AAGTAGTTGccaataatatatatatatatatgagctatttcaaagttgaa atttcaGTTTTCGAAAGGTATAAAGATACACTGACATAAGGTTATACCTC GAAATTTAAGTTGGACTATTCGCTTTCTTATAAACTACGATCGGCGTTGG AATATATTGtcaatttttggtattttaacctttttcaaaatttaaagctc gggcgagaattgcagtttcagtacttccactttgtttcattgaatttttt atttgggaggggttaagtggcttccaggttatattctcagccttattaga atatttttgggcttttagatcctgagatcccaaggtctaagtcttaagtc taatgttaaaagtcagagttaaaactctactttccaaccgtgcttcaaag cacttaaaaatcacttgcggttttaaagttttgaggggaTTCCCCTTTTC taccaaatatttcggcgccgatttTAGATTTGAGCTCAAGCAAGATATCG TTCGACTTGAGCgaatcatcaaaagtttcatcAAAGAGTCACCCGACGTA CTCTTTCAAATTGGCCTCTGAAAAAGACCTTTTATGACCATGTTGTAACT TAAAATTTTAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCAACAA GAAATCGTCATGCTTAGATTAAAGGTACCGTCTAAATCAGATGATCAAAG ATTGACAGTCGAGCAAATGCAGTCAGATGCAGAAAGCAGTAAGTCTGAAA ATGTAATATAAGAATAATATGGAAAATTGGGCTATTagagaaatagtctg taccccctatatTGAAGTGTTGtgtaaaatccagggtggtcagtaaaatg aggtggaaaatccagggtggtcagtaaatgagatgaaaaatccagggtgg tcagtaaatgAGATGGAAAATCCAGAATAGTCAGTAAAAGCAGGTCGAAA ATCAAGTtggtccaaaaaatgagaaaaaaatccaagggggtcacctttac caaaaaaaatctcaaaatagggggtacaaattttttccGGAATAGCCCAT TTCAACCAGCCGGGtatacttttcaatttttgcaccCTAGAGCCTTATCC AGGTTATCAATGACTACATTGACTGGATTGTTGATGGAACTGATGGTATC ATAGTTTTTGAGGTACGGCCGTTTGAAGTTTTTACCCCTCACCTATCCCT GGCAAGTGgtccatattttgaaaaattgagcaaCATCTATAGAGGGTAtt aattaatatttttgatAGGTGGAAGGGGATATACCTACATGAAAAGATTT TCCCTTCATGCTTTCAGAGTTTTGCCTGGCAGATCGCATTTTGATCACCG ATGTTTAATACTCTTAATGATCAATAGCAATCATCTATTtcgtttaggta ccaaaaactcaGTGGTTGAATTCAAAACCCATGGAGACTTCCTTAGAACA GGTTAGAGAGCTAGATGCATCCcttttctaaaataattttgttatcAATC TCTGCATCACAGGacataatagcgagtttatatatgtgtgtttttctgca acggagacggtaaggttctaactTGACTAGATCCAGACCAGCTgagacga cggtaaatcagcacttttaccgttcttggttttgcgggtcagaattgcgg gttattccaaatcgcttcagacagtctaccgtcctcaaaagtgcaaatac atgtTAACTCGCTAATGTAGTATATTACCCTAAAACATTAGGCTAtgcat gatatgcaccactggagagtcttctgagattctaaaattttccacccaat acgtcacttaaacgatagaaaaagtgacgtattgggtggaacaaaaacag aaaagctGCATAATTTCGTggagtcattgcagtggtgcatatcatgaatt ccatcACTTCCAATCTAATTACTCCAAAGAAGGTCAAAATCTCCAGTGCT GGACAAATTATGGCAATATCAATCATGATAATAACAGAAGTGAGTAACGA GAGTCAATAAAATCTTTGCTGGAATCCATAAGTAGGAATCTAAGTTTCTC TGAGTTTAGTCAGACAAAACTTGAAGTTGATAGCACAACTAGAgcttttt ttggaccacccggtaTTAAAATTATACTATAATGTCAAATATCCTccata tttttattaaaattaaacCGAATCTTCTTGGTGACGTTATTGAAAATTTG GCTTGATGGCGTGAATTAAGCTGGACAGCTCTCacctctcccagaggaag tggtaaaTAACCTCAACAAtgatactcgagtaaaatttccaatagtgtga acagcagcaacgtcattttacaagcaaaagatgccttctagcttaaaaaa tcagcaggatcctgccttgacaaaaatcgctatctttgtttatgttttgc aagtgtgcaaaagtgaaagtagcagcaacGGCAGAAAAAACAgacatctc gcacttgattggatattcaaactcgatataattttagTAACACTTTtact tcttttaaaaatatgtatatttgaaaaaaatgacaaaaaaacagaaccaa agttttactaaaattaattttcaatataaCTCACGAggtaaatgcttctt ttcgCTGGCTAAACAGGTGCCATTCTTCAATTCAGAGCAAATGTGGTTGT GATGTCTTATGAGACTGATGAGACCGAAAAAATGGTGTGATCAGGGTGTA ATGATCGAGAGGCTTTTCTCTTCCACTGTcccttcattttcttttctagt TTTGTCGATCGGGAATTGGTATGATCGGCTGCAAGATGACGTGAGTTGTT TGTCGACTATTAAATCATCTTTTAAGTATGTATTAACAGGTGAGTTCGCT GTTTACTGCATTACAATTTTTTATAGCCTTCCAGGTttataaactttttc attttgtcaaaTGGTTTATTCATTAATAGGCAGGGCTAAAAGTGGGCCGA CTAAACCAGAGCTCaacattgttaaccggttactttttcgaagcgggcta cacagctttttgcgcaatgcaattggttcttttcgcatgacgacgggcct acactttACAGAATTGCCCGTCGTTAGAAAAGttcattgtgacgtcagtt ttttttcaaaggaaaatgaacactgCGTTGACATCTTTgtctaatttttc attttcgacGTCAGAAATTAGAATAACttttggccactttttgcttgttt ttcgctattttttctgGATAAGGCgcgaaaaatcaaagaaaaacggttaa caaatacaataatgaccgttttttttcgggctgtGCCGAAAAATAATACC CTCgttcaacgcaacaacctcgcaagctcggtcgttacttgaccgtGGGC AATATATcggtacagccctcactaaccggtcattattgtattagtaaAAT TACTAATTAGCAGATACTCCAAAAACTGGGAAACTTCAGGAGCGAAATTC AGATTCAGACAATTATGTTCACATACTGTGATTCCTGATTCCgatcaaaa atttaagaaacaaAACTGACAAGAATGAGTCAGTAGCCATCCTTGATTCA AAATGTTGATGCTAATACTAATGTATTTCTTGTAAATTCCAGATCTCGAG GCTGCATTAAAAGAAGTTGCATTAAATGACCATGAAATTTCACTCGTGGA AAACTCTTCAAAGTATTTATCAGgtaacaaaaagtttttcaattgtgTTT TATAGAAGACTGGTAGAAAGTACGCAATGTAAATTTGCATTAAAAGTTTG ACACGTTAAGAATTTAAATtcacaaaaagaattttttcttttacgtGAAA GGTTTTTCTATATAACATCCATCACCAGATATTCTGATTTTTAGACCTCT TTACAGCCTGGATGAGTAGAAGtttataaattgaaattttttcatacCGT AGATACAAATGCAGATTTTATTCACCATAGTTCTCTGTGGTCAAACAATC AAATCCTacatagaacaatagaatgataaatgattttcttaatctcAGGA ATGATGAAAGTGAAAGACTTTTGCCAAGATAAAAACATCAAGGAAATTTG TAACAGTATCATTCGTACCATGGTCACCAAGATCATGAACGCTCACCCTG TTCAGGTATGAATATAATGAAGTCAGAACAACCTGCCTAGTGAAGGGATT AAAAGAAGTCCCCCAGCAGAGCTAACTGCTGATCTCTAACTACTCATAGA GTGCAGAGGGGttgaagcccccccccctgaaggttcagccccccccctga gatttagcccccacctaaattcgaaatagacagcccccctaccaaaatac aaacattttttttaatttatgcttaaaaatttcaaacaatgcaaGGTCTT CATTTTGCATGTCCACACAAGAGAAAGAGATACCAAATGTATAAtgtctt cttttgaaattctaatcaaCAAACGTCAATAGTACGACTTCATTATTACA caaacaaaataccaaaatgtacaaagaaaaatttcttagttcttggaaaa aattgttaGGTTAGCCCCCAGTAAACAGACCTAAacaaatagcccccccc cccctgagtaagtagcccccccccctgatcttagggaaaaagagccccCA GCCAGAACTTTAGGTTCTAGcccccccccTAAGAGCCAGGGGGTTGCATT CTAtgctacttgactggatcgagCTACCCTTACAATAGAAGGGTGTCCAG GTTTAGAGCTAACTAGTCCgtcatcttgttttcaattctggtcgtTAACA gcgcgattcgaatgttttgaaattcgaccATTCACAAATCTAAGTTAAAA TAGAAAACAATGTGGCGGACTAGTCGTCttcaaaactggacacacttcca cGGGAAATCTGTGAGCAGATACTAgcctatctagtgtgtaaaagaatatg atatctATGGAGCGAACCCAGTTTGCtttaattttcaagcaaaacaCAAT GCGGTTTTGAATGTATTGGCTGGACAATCAGGTCAGACCCTTTAGTCTTT ATAGTTGAGCGTGATATgtgcagaatggatgatctgttatgagagtGTTA TGGGTGTTATGAAAGAGTTATGTTATGAGACTTttaacccccgggggggg ggggtacttaggcaaaatgggtgccgggtatgtgcgatccataagggtac cttttctcattcctcaaaagtctctcaaaggggtacaaattcaaaagtta gtctctgaaagggtcccaaaaatcacaaaaatcaaaaatttctctctcaa agggtcacgatttccaagaattttgaccaaaatttggtgaaaatcaaacc aaaatttggaaaaaatggaccaaagtttaggaaaaagtctctcaaagggt cccaaaatcaccaaaattttgtctctcaaagggttgattttcgattttcg gctcggacattcccgtcacctcgcaaacctagtacccccccgggctttAA CCTACTTTACTATCTAAGTCTAGCGCCATTCTAACACGATGATGACAATG TATCTGTTCCCCAAAATGAGATTTGAACCACTTTGAAGCTACGAAAATGC AtgaaaaagagacaaaacattttcttctttagcCCAGCTTATTAATAGTT TAGATTTAGTGACATCTAAAAAGCATAATgatgaatttcaattttcttcg tTTAGGGTAAGAGATTGAACAGTGCGCTTTCAGCATCGTTATTACTCTTC TGTCAATCATCACCAATGATATGTGAAAATGTTGTCGCCATCATGGTACG TGTAATCGCTGGTTTCACCAATCTTTTGAAAGGTAAGACAAGGTGGCTGA TTTCACAATAGCCCGGGACCACTAATatctttttgatagactggatagtg ctgataagtggcccggtgtaATTTGGCAGACTCCATTGTTTGGCTTTGCT TTGAGCACGTAGCAAATCCATACCACCAGatccctttttggagaaaaaca aacgGAAAACCATGATCAATTgaccattttcatcaaatttggagactttt attatagtttcatgagttttatatgatttttgaaaacgaaattaaaaaat tgatgacAGAATCCTCTAGTCTTCTTACTAGACATCAAAATCTATCAAAA TCATCATGAAGCAAAGTAAGAAGACCTTAATGGCGAAAATTGTGCTGAAA TATCTCAATATGTTATCGGATGTAAAAGAGGGCATCGGAATTTTAGAGCT GAATTAATGCTGGAAAATACCAATTAATAGAGTGCCAGTCGAATATACTT TCTTGAATTCAGAAAATTGACTCTATATGTACCGGAACCGTGATACAAAA TACCCAATAGAGTTGGTTGTattgttttcttcatttctaTGGAAAATGGG ATGTTAATGATCGATTTATTTAAACCGAATTTTGTGCTTCGATTGGGTTC GATTAGTTCCATCTCAACTGAATAAAGCTCATTTGAACCCCTGGTTTATG ATGATCTAAACCTGTTTTGATTCAttgattcttattttcactCTGATAAA TTTCCATGCTTACTGTGGAGAATCAGACCGTTGGCAAAAGAAccctttga aaaattcttttcataccttaaacagtcagggaattccctcaattgcggta tataCGAatacatatagtgctggtcgacaaagataaacaaacattgaTTG TAAAAAATAGTACGAGGAAAAAGcttctccttgaatcttgaattctgttt cttgcATATACTGCATTTgcagtttatgaaaaatgtaaaagcgATGTTTA TACAGCAATTGCGGTAGAAAATTACTACCGCTATAGAGGGAATTCCTTGT CTGTTAAAGTGACGTTGGAATGTACTAAAACCACTTTTTTACCCCCattg gaaattttaaaacactCTTTTAGACTCCTGGGAATTCTGCTcgaattacc ccctggaaatgttcatcCACCCCTCTCTATGgacataaaatggaatggcc catttttcGATTACTATAACTGTTCTTCCCAACACTGTAAATATTAGTTG TGAAGTATGTCACATTTTATAATTTCACAGATCTGTCATCCTTCACCAAC TTGAACGTTTCCAAGTACCAAAACATTTGCTACATTTGCAATATCCTTCA TGACGTCATTGTACAGGCTGCATCTCATATCAATGCGTCCCTCTTTGGTA GGTTTGTTTTTCATCGATGTTGCAATAATCTATCGTCCGATCATTTTCAT TCAGATAATCTAAGATAATGGTTGACAACTTTCAAGTGCAAACCCgttta tttttactattcaAAGCAATGGGTATTGGGTGTTTTGTAAAAAAGCcatt ataaagaaaataacacccctgtctcacagccccggtggaacttgtCCTTA ATGGGGATATAAATTCCTCTTGAAATCCCgatattctattgttccaaaat ccagtggggatggtattggagttcaatttttttacattgaattttgagta GGATGAAAAGTCGATTTCCCAGTGAGGTTAAAATCCCCACCGAGtgcgaa atttttgccaaattttccaataGGGCTGGAGtaccagcgggtctgtgaca caggggtgtaaaataTAAATGGGAATCTTAAGGTGGTTCCCACTGGTTGG AGCTAAAATGCTCATTATTGGTCCAATAAAGTTGGTTTTTGGTCAAATGA TAGAAATCTAAgtaaaatagaattttcaaacaaaaaatttccattttaca aattttgttcCTTTCCAATATGATTTATTAGCCATTTAGAGGGATCCAGT ATCAGCCATTTGAGGGATCCAGTCTGAAGTTTATAGAGGCTGCAATTTCA ATCTTCTGTCTTATCCCATTAGGAATTAACTCATTGAACCAGGCTCGCCA TTTATACggtattctcaacttcagttgagctagaatctgacagtgtctgt ctatctgtctgacttcaaaaatggtcggatttgattgaaattttgcatat ttGTTCTTTTGGTGAATATCtagggtgttttttcattttttgaaaatttt gatttttggggcctggggacgagttttagCGCCAAAGCGAGGCTAAAACA TTGGGGCAGGTTGAAGACCTCAGAAATGGTCCgatttaattgaaattttg gaCACTTGTTCCTTTGGTGAATATATGGGGGTGgtttattcatttgtttt caaatttttcattttaagggcgtggtcacaagGTTCAGCCCAAAACGAAG CTAAAAcatttctcaaatcaaaaattttctgttgatgtttacaattgggc ctacgagtaatttaaaagatactgaagttgagccagtgcggttagcacat TCGACAGTCTTAATAGGGTACACTTTTCTATTTTCCAGCGGACTAAAAGT GAGAATTAGGCTTAAGAAGAAACAATTCGACTGGAACACATTTGTTTtca atcttcaatttttctcataGATCAATACGCTGTGATGCTGGACAAGAATT TGTTTGACGTATCCAATCAATTTTCAATGTACACACATATGGTGTGGAAG CTCAGCTCCTTGATGAGTATGGTCACATTGGTGTAG

Coding sequence (CDS) from alignment at sc0000366_pilon:187915..197700+

>XLOC_014259 ID=XLOC_014259|Name=XLOC_014259|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2034bp|location=Sequence derived from alignment at sc0000366_pilon:187915..197700+ (Clytia hemisphaerica_ch_hm2_pilon)
AACACAATGGATACATCAGCTACAAAACCATCCATGGAAGAGGAGAATGA
AACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGAACACAA
TGGATACATCAGCTACAAAACCATCCATGGAAGAGGAGAATGAAACCCAA
CGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGCGATGTCCATCAT
AAGAAGCAAGCCAGAGGGTGTGACATCAAAAGAATATGCTCAACAACTCG
CCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGGCGATGTCC
ATCATAAGAAGCAAGCCAGAGGGTGTGACATCAAAAGAATATGCTCAACA
ACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGTATA
AAGACATGGAGACAGTGTTGAAGAAAGCTCAACAAGAAATCGTCATGCTT
AGATTAAAGGTACCGTCTAAATCAGATGATCAAAGATTGACAGTCGAGCA
AATGCAGTCAGATGCAGAAAGCATATAAAGACATGGAGACAGTGTTGAAG
AAAGCTCAACAAGAAATCGTCATGCTTAGATTAAAGGTACCGTCTAAATC
AGATGATCAAAGATTGACAGTCGAGCAAATGCAGTCAGATGCAGAAAGCA
gtaccaaaaactcaGTGGTTGAATTCAAAACCCATGGAGACTTCCTTAGA
ACAGgtaccaaaaactcaGTGGTTGAATTCAAAACCCATGGAGACTTCCT
TAGAACAGtTTTGTCGATCGGGAATTGGTATGATCGGCTGCAAGATGACG
TGAGTTGTTTGTCGACTATTAAATCATCTTTTAAGTATGTATTAACAGtT
TTGTCGATCGGGAATTGGTATGATCGGCTGCAAGATGACGTGAGTTGTTT
GTCGACTATTAAATCATCTTTTAAGTATGTATTAACAGATCTCGAGGCTG
CATTAAAAGAAGTTGCATTAAATGACCATGAAATTTCACTCGTGGAAAAC
TCTTCAAAGTATTTATCAGATCTCGAGGCTGCATTAAAAGAAGTTGCATT
AAATGACCATGAAATTTCACTCGTGGAAAACTCTTCAAAGTATTTATCAG
GAATGATGAAAGTGAAAGACTTTTGCCAAGATAAAAACATCAAGGAAATT
TGTAACAGTATCATTCGTACCATGGTCACCAAGATCATGAACGCTCACCC
TGTTCAGGAATGATGAAAGTGAAAGACTTTTGCCAAGATAAAAACATCAA
GGAAATTTGTAACAGTATCATTCGTACCATGGTCACCAAGATCATGAACG
CTCACCCTGTTCAGGGTAAGAGATTGAACAGTGCGCTTTCAGCATCGTTA
TTACTCTTCTGTCAATCATCACCAATGATATGTGAAAATGTTGTCGCCAT
CATGGTACGTGTAATCGCTGGTTTCACCAATCTTTTGAAAGGGTAAGAGA
TTGAACAGTGCGCTTTCAGCATCGTTATTACTCTTCTGTCAATCATCACC
AATGATATGTGAAAATGTTGTCGCCATCATGGTACGTGTAATCGCTGGTT
TCACCAATCTTTTGAAAGATCTGTCATCCTTCACCAACTTGAACGTTTCC
AAGTACCAAAACATTTGCTACATTTGCAATATCCTTCATGACGTCATTGT
ACAGGCTGCATCTCATATCAATGCGTCCCTCTTTGATCTGTCATCCTTCA
CCAACTTGAACGTTTCCAAGTACCAAAACATTTGCTACATTTGCAATATC
CTTCATGACGTCATTGTACAGGCTGCATCTCATATCAATGCGTCCCTCTT
TGATCAATACGCTGTGATGCTGGACAAGAATTTGTTTGACGTATCCAATC
AATTTTCAATGTACACACATATGGTGTGGAAGCTCAGCTCCTTGATGAGT
ATGGTCACATTGGTGTAGATCAATACGCTGTGATGCTGGACAAGAATTTG
TTTGACGTATCCAATCAATTTTCAATGTACACACATATGGTGTGGAAGCT
CAGCTCCTTGATGAGTATGGTCACATTGGTGTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_014259XLOC_014259-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000366_pilongenomesc0000366_pilon:187915..197700 +
Properties
Property NameValue
Aaloc904-1017:9673
Aaloc787-900:8283
Aaloc658-783:6906
Aaloc553-657:5251
Aaloc472-549:4845
Aaloc382-468:4002
Aaloc328-378:2650
Aaloc199-324:1862
Aaloc94-198:840
Aaloc1-93:1