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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000240_pilon:88641..93593+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_014218 ID=XLOC_014218|Name=XLOC_014218|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4953bp|location=Sequence derived from alignment at sc0000240_pilon:88641..93593+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTCATTCAACCATGTACTACTTTACCAAGGTCATGAAAGGTATGTC
GCACGATTAACAAAACCATCCCTAGTTTTCTACAAGAatcgaaattaaat
ttttcttaagtGTCTGAATGATTTTACCCTTTTAATGAGGATTATattat
atgttcactgaatattTAGAACCATTTCCACTGAGCTTTATAAACCAATG
AGTCactttctcaatcccggccaaacAAAAtactttgatcggagttttct
ttttgaaagtgTTACCCGCATCGAGAGCTATGATTTACTTAGTTTGTACA
TAAGTGATACAGCGCCGTTTGTCGTGATGCAGTTTTAACACTACAATAGC
TACTTTGTGGGTATCACTCTCaaaaaaaTACACCGATCAAatatggcgga
tatagcttggtccagggtttataaaggtcagtgaccaTTTTCCTTATTTT
ACTTACGTCACAGACCTGTTTATTGAAGAGCCCGAGTTCGAGAGTATGAC
CACCATGAAACACTTCTGGGATGTAAGAATCGCATGCCTTTCAAACGCAT
GCTTTTCTCGCATGAGAAAGATCAGTTAGTTTAGCCGGCATGTCAATAGA
TTGGTTATTTAGACAGTACCTTGCATGATTTTGTCCGTTTTTCTTAGATC
TTTTTGTTACTAACACTGGATTTGATAGTTACACAACCATGAAAGACTTC
TGGACTGTAAGTTAACCATAATCTTTAACCAATATTGACTAATTCAAACA
TGTTCCTCCGAATATTTCTTTTAACAACACTTGCATGAATTTGTTGCATG
TTTAACCTATAATTTGCCATTCCGGAATGTTTTACCAAACACTTTGATTA
GCTGATACAAATATCTATTATCGAAATTTTCTCCCAAATTATGAATGTAT
TTGTTAGTGCTCTGCTGGTTCCACTTGTCGACCCAGGCAATCAAAACAAC
TGAATTTTACATTGTACattgaatttttatattttgcttGTATGTGTAGT
TTGCAGACGACGGTTTGATGAACGGTCTGTACTGGGAAGAATACTACAAC
GGAAAACCAATCACCAATAATGATGAAAAGGGATACATCtactttgaaaa
caaattattgGGCAGGCCCCGGCTTCGGCAGGTTAGGGTTAGAAACGACT
CTTGCACTGTTCCTGATGACTTCAAGAAAGAAATTAAGGAGTGTTATGCT
CCTTATTCTGAAAGTGTGGAAGATAAACGTGCTTTCCGTGTCATGAACGG
CTCTGCGTAAGTCATTTTACTTCTTCGTCTGTAATACGTCTTTGAATTTG
CCCATCGGTTGCTAACTGGCTTTTGTTTGATTGGTTATTGAATCTTTGTT
CAAATTATAttaccgtacatcctgtgcccaagtccaggagttgccataaa
gccattatggtaataaccgggagggcacattgctatacattgtctttgtt
caaattataaatttatatttttcgaaTTATACAACTTCTATGAATAAATC
GAAATTCCTCCCTTTTTAATAAGATCAATTAAATTTACTATGAAATTGta
attattcttttctttttgttcagatGGGAATATTCCACGGAAGACGAGTT
GAACGGACGTGGTTTCCGTGGGCGCGTCACTACATACGGAGGCGGTGGTT
TCACCAAACTTTTAGCTGGTGAGAAAGCTCCTTCAAAGGACATCATTGCT
GAACTCAAAGCTAACTTGTGGTTAGATCGTGGTACCCGGGCTGTTTTCAT
CGATTTTACCGTCTACAACGCTAACATCAATCTCTTCTGCATTGTCACGT
AagacattttttacattttttgttgaTACCTAAACCTCACTCACctctaa
agtttttttttgaaatcactAGTTTGTACAGTTTCCTACACTCAGTATTT
GAACCATATGATTGTTTTTAACACTTCTTCCCTTCACTCTTTCAGTTTGC
TCTTGGAATATCCGGCTACTGGAGGATGTATTCCATACTACAAATTCCGA
ACATTGAAACTTCTCCGATACGTCACACCCATGGATCAATTCGTCTTCGC
TTGTGAATGTATCTTCGTTCTTTTCCTCCTCTACTACGCCATTGAAGAAG
TGATCGAAATCCATAAACACAAATTGGAATACTTCAAAGACTTCTGGAAC
ATTGTTGACATTTTGGTGGTATTGATGGGTATCGTGTGTGTTGCTTTTAA
CGTCTACAGAACCATGGAAGTGGGAAATCTCTTACAAGACCTTCTCGATC
ATCAAGACAAATATGCTAATTTCGATACTTTGGGTTATTGGCAAGAAACA
TTTAACGATTTCATTGCTGTTGCTGTCTTTGTTGGATTAAGGTAGGTTAC
TGCTCACCCTTTTATTAGGAATTTTATCTTTAGTGGTCTGCAAACTAGAC
TAGAATTGAGGTAAGTTGATCCAAATGAAAAGAACGCAATGACTTGACGG
ATTTTTTGTTCCCCAGATTTATAATCGAATTTGAGTATAGCGTGACTCTT
TCAGTTTATTGAAATctcatttaatttcttttttgtagGTTTTCAAATAC
ATCAGCTTCAACAAGACTATGACACAATTGCAATCTACTCTTGCACGTTG
CGCAAAAGATATTGCCGGATTCGCTGTCATGTTCTTCATCATCTTCTTGG
CCTACGCTCAATGGGGTTATTTGATCTTCGGAACACAAGTCCGTGATTTC
TCCACTTATCTCAACAGTGTGTAAGTATACtattttattctttcatttca
tttagAACCTGCTGTTTTAGAGTCTTTTGTGACTTTCAGCACTTATGTTT
ATCACttaacctgattgattttcaaCATTTCTTTCATTAGTCAACCGTGT
CGTGGGTTCTTAAATAGACATCGTTCCATTTGGTGCTTTTAGGAGAGTTT
AAACGAATCCCTCATTTCTGTATTCAGAATATCGGGAAGCCCCGAAGTAT
AAACTAATTGgtattttaaacctttttttatctATACTAAggttattttc
ttctttttcagtttcacaTTGTTCCGTATCATTCTTGGTGATTTCAACTT
CCGTGAGATCGAAGACGCCAACCGCTTCTTGGGTCCACTCTTCTTCATCT
CTTACgtcttcttcgttttcttcgTCCTCATCAACATGTTCTTGGCTATC
ATCAATGATACCTACGCTGAAGTCAAATCCGACTTGGCACAACAAGAGGA
CGATTTCGCTTTCGGAGATTATTTCAAGAAAGGATACGATAAGATGATGA
ACAAACTCTCCTTCAAACGTGAGAAAATTGTTGACATTCAAAAAGCTCTC
CAAACTGCTGACACTAATCAAGACAACAAATTGGACTTTGAAGAATGGAG
AACTGAACTCAAAGCGTAAGTCTCCAGCATATCACCAACTTGTCAAAAGA
gaaacaaattgaaattttatgaaattactAAAGCAAAAGTACTTAGAGAA
AATACCCGCTTTGCCTTATTTCCTACTTACTTCAATCAGATTTAATTTAA
AGGTTAGAAGTATCTTTGCGCCTTAAAACCTTGTATACAATCCTTAAACT
CATCGTAAACAATTTCCACTTTCACCTTCTTCCTATATTTTAGTCTTGGT
CACGCTGATGCGGAGATTGAGGCAGTGTTCGCCAAATACGATGTTGATGG
TGACCGTATCTTGAACGAAGATGAACAACGAAAAATGCAAGAAGATCtcg
aaggacaaaaggtatgtCAACCCCTTCTAAGAAATGGTGGTATTTTATAA
TTCTAAGAGAAGAAGAGCAAAGTTTGTATGGCAAGTTTTTTAAAAGGGAT
GCTTAAACTTTTATCCAAACGATGCAAACTGATTAGGATAACTTTGATTT
CAGAAAGCATGGAGAGGGTTGGAAGTTAAATTTGTTTtgtaattcatttt
ttgaattgaaatttttactCGTGATCAGTCGTGATCAGAGGACACCGAAA
CTTCTAGAAATATATGTTTACAATTTCTACAAGTTTCTTGATATAAATCG
AAAAATTCACTGCATTTTTGTTCATCCAGGCTGAATTGAACGAGGAAATC
GAAGAGGTTGAACGTGCAAAGGGTGATGCCTCTCGCATCAAGAGCAAGAT
GAGCGTCCGCGATGATGACGATTCCGataacgaaagtgaaagtggtgGTG
GCACTCGCATCCCGTTCGAAGAATTCACTGTGTAAGTTTTTTAttcgttt
aaaaaaatgattttcaattttttagaatttgaattgctcttttcagagat
tttgttcatcctattttaattgTGTCTCATTACTTCAATTTACTGACCCT
AGACTTAAAGGATCTGTGTTGCATTTCTaatcaattttctgaaatttttt
attttacagtttGAGCCGAAGAGTGGACCGTGTGGAACACAGCATCGGAA
GCATTGTATCCAAGATCGATGCCGTCCTCCTCAAACTCGAAGCTATGGAT
AAAGCCAAGATCAAGAGACGTGAAACCATGACCAAATTGTTGGACAGCAT
CTCTGAACAATCGAGTCAAGGAGGAGATGATAATAAGCGAGAACGCCTCG
AAAAACTCGTCCGTGATGAGTTAGAAACCTGGGACAGCGAGACCGCTTTG
AAACGACCTGCTAGCTCCaacaaaaaatccaaggggAGCTCAGTTTCAAT
TAAAGTGAGTAATTGActtctttttcattctttcactttttcttttcact
ttttggaTAAAAGAATGACGCACATATATTCTTTAATAGTTTTGAGTCAT
CTTATTTGCTTGAAATGTCATTCACGAATTCATGTTTTGATGGGTTTTGC
CCAAcgacaattttttcttctttttcttttgtctagATAGACCCTTAACT
CAACTAACAACTTGTGTTGATTGTGACCAAGTGTAAAGAGAGCCGAAAAA
ATCACACTCTTCTTTCGTTCAATTTGTAGGAGGATGCTTCCATTCCAAAA
TAA Coding sequence (CDS) from alignment at sc0000240_pilon:88641..93593+ >XLOC_014218 ID=XLOC_014218|Name=XLOC_014218|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4218bp|location=Sequence derived from alignment at sc0000240_pilon:88641..93593+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTCATTCAACCATGTACTACTTTACCAAGGTCATGAAAGATGACTC
ATTCAACCATGTACTACTTTACCAAGGTCATGAAAGACCTGTTTATTGAA
GAGCCCGAGTTCGAGAGTATGACCACCATGAAACACTTCTGGGATACCTG
TTTATTGAAGAGCCCGAGTTCGAGAGTATGACCACCATGAAACACTTCTG
GGATTTTGCAGACGACGGTTTGATGAACGGTCTGTACTGGGAAGAATACT
ACAACGGAAAACCAATCACCAATAATGATGAAAAGGGATACATCtacttt
gaaaacaaattattgGGCAGGCCCCGGCTTCGGCAGGTTAGGGTTAGAAA
CGACTCTTGCACTGTTCCTGATGACTTCAAGAAAGAAATTAAGGAGTGTT
ATGCTCCTTATTCTGAAAGTGTGGAAGATAAACGTGCTTTCCGTGTCATG
AACGGCTCTGCTTTGCAGACGACGGTTTGATGAACGGTCTGTACTGGGAA
GAATACTACAACGGAAAACCAATCACCAATAATGATGAAAAGGGATACAT
CtactttgaaaacaaattattgGGCAGGCCCCGGCTTCGGCAGGTTAGGG
TTAGAAACGACTCTTGCACTGTTCCTGATGACTTCAAGAAAGAAATTAAG
GAGTGTTATGCTCCTTATTCTGAAAGTGTGGAAGATAAACGTGCTTTCCG
TGTCATGAACGGCTCTGCatGGGAATATTCCACGGAAGACGAGTTGAACG
GACGTGGTTTCCGTGGGCGCGTCACTACATACGGAGGCGGTGGTTTCACC
AAACTTTTAGCTGGTGAGAAAGCTCCTTCAAAGGACATCATTGCTGAACT
CAAAGCTAACTTGTGGTTAGATCGTGGTACCCGGGCTGTTTTCATCGATT
TTACCGTCTACAACGCTAACATCAATCTCTTCTGCATTGTCACatGGGAA
TATTCCACGGAAGACGAGTTGAACGGACGTGGTTTCCGTGGGCGCGTCAC
TACATACGGAGGCGGTGGTTTCACCAAACTTTTAGCTGGTGAGAAAGCTC
CTTCAAAGGACATCATTGCTGAACTCAAAGCTAACTTGTGGTTAGATCGT
GGTACCCGGGCTGTTTTCATCGATTTTACCGTCTACAACGCTAACATCAA
TCTCTTCTGCATTGTCACTTTGCTCTTGGAATATCCGGCTACTGGAGGAT
GTATTCCATACTACAAATTCCGAACATTGAAACTTCTCCGATACGTCACA
CCCATGGATCAATTCGTCTTCGCTTGTGAATGTATCTTCGTTCTTTTCCT
CCTCTACTACGCCATTGAAGAAGTGATCGAAATCCATAAACACAAATTGG
AATACTTCAAAGACTTCTGGAACATTGTTGACATTTTGGTGGTATTGATG
GGTATCGTGTGTGTTGCTTTTAACGTCTACAGAACCATGGAAGTGGGAAA
TCTCTTACAAGACCTTCTCGATCATCAAGACAAATATGCTAATTTCGATA
CTTTGGGTTATTGGCAAGAAACATTTAACGATTTCATTGCTGTTGCTGTC
TTTGTTGGATTAAGGTAGTTTGCTCTTGGAATATCCGGCTACTGGAGGAT
GTATTCCATACTACAAATTCCGAACATTGAAACTTCTCCGATACGTCACA
CCCATGGATCAATTCGTCTTCGCTTGTGAATGTATCTTCGTTCTTTTCCT
CCTCTACTACGCCATTGAAGAAGTGATCGAAATCCATAAACACAAATTGG
AATACTTCAAAGACTTCTGGAACATTGTTGACATTTTGGTGGTATTGATG
GGTATCGTGTGTGTTGCTTTTAACGTCTACAGAACCATGGAAGTGGGAAA
TCTCTTACAAGACCTTCTCGATCATCAAGACAAATATGCTAATTTCGATA
CTTTGGGTTATTGGCAAGAAACATTTAACGATTTCATTGCTGTTGCTGTC
TTTGTTGGATTAAGGTAGGTTTTCAAATACATCAGCTTCAACAAGACTAT
GACACAATTGCAATCTACTCTTGCACGTTGCGCAAAAGATATTGCCGGAT
TCGCTGTCATGTTCTTCATCATCTTCTTGGCCTACGCTCAATGGGGTTAT
TTGATCTTCGGAACACAAGTCCGTGATTTCTCCACTTATCTCAACAGTGT
GTTTTCAAATACATCAGCTTCAACAAGACTATGACACAATTGCAATCTAC
TCTTGCACGTTGCGCAAAAGATATTGCCGGATTCGCTGTCATGTTCTTCA
TCATCTTCTTGGCCTACGCTCAATGGGGTTATTTGATCTTCGGAACACAA
GTCCGTGATTTCTCCACTTATCTCAACAGTGTtttcacaTTGTTCCGTAT
CATTCTTGGTGATTTCAACTTCCGTGAGATCGAAGACGCCAACCGCTTCT
TGGGTCCACTCTTCTTCATCTCTTACgtcttcttcgttttcttcgTCCTC
ATCAACATGTTCTTGGCTATCATCAATGATACCTACGCTGAAGTCAAATC
CGACTTGGCACAACAAGAGGACGATTTCGCTTTCGGAGATTATTTCAAGA
AAGGATACGATAAGATGATGAACAAACTCTCCTTCAAACGTGAGAAAATT
GTTGACATTCAAAAAGCTCTCCAAACTGCTGACACTAATCAAGACAACAA
ATTGGACTTTGAAGAATGGAGAACTGAACTCAAAGCtttcacaTTGTTCC
GTATCATTCTTGGTGATTTCAACTTCCGTGAGATCGAAGACGCCAACCGC
TTCTTGGGTCCACTCTTCTTCATCTCTTACgtcttcttcgttttcttcgT
CCTCATCAACATGTTCTTGGCTATCATCAATGATACCTACGCTGAAGTCA
AATCCGACTTGGCACAACAAGAGGACGATTTCGCTTTCGGAGATTATTTC
AAGAAAGGATACGATAAGATGATGAACAAACTCTCCTTCAAACGTGAGAA
AATTGTTGACATTCAAAAAGCTCTCCAAACTGCTGACACTAATCAAGACA
ACAAATTGGACTTTGAAGAATGGAGAACTGAACTCAAAGCTCTTGGTCAC
GCTGATGCGGAGATTGAGGCAGTGTTCGCCAAATACGATGTTGATGGTGA
CCGTATCTTGAACGAAGATGAACAACGAAAAATGCAAGAAGATCtcgaag
gacaaaagTCTTGGTCACGCTGATGCGGAGATTGAGGCAGTGTTCGCCAA
ATACGATGTTGATGGTGACCGTATCTTGAACGAAGATGAACAACGAAAAA
TGCAAGAAGATCtcgaaggacaaaagGCTGAATTGAACGAGGAAATCGAA
GAGGTTGAACGTGCAAAGGGTGATGCCTCTCGCATCAAGAGCAAGATGAG
CGTCCGCGATGATGACGATTCCGataacgaaagtgaaagtggtgGTGGCA
CTCGCATCCCGTTCGAAGAATTCACTGTGCTGAATTGAACGAGGAAATCG
AAGAGGTTGAACGTGCAAAGGGTGATGCCTCTCGCATCAAGAGCAAGATG
AGCGTCCGCGATGATGACGATTCCGataacgaaagtgaaagtggtgGTGG
CACTCGCATCCCGTTCGAAGAATTCACTGTtttGAGCCGAAGAGTGGACC
GTGTGGAACACAGCATCGGAAGCATTGTATCCAAGATCGATGCCGTCCTC
CTCAAACTCGAAGCTATGGATAAAGCCAAGATCAAGAGACGTGAAACCAT
GACCAAATTGTTGGACAGCATCTCTGAACAATCGAGTCAAGGAGGAGATG
ATAATAAGCGAGAACGCCTCGAAAAACTCGTCCGTGATGAGTTAGAAACC
TGGGACAGCGAGACCGCTTTGAAACGACCTGCTAGCTCCaacaaaaaatc
caaggggAGCTCAGTTTCAATTAAAtttGAGCCGAAGAGTGGACCGTGTG
GAACACAGCATCGGAAGCATTGTATCCAAGATCGATGCCGTCCTCCTCAA
ACTCGAAGCTATGGATAAAGCCAAGATCAAGAGACGTGAAACCATGACCA
AATTGTTGGACAGCATCTCTGAACAATCGAGTCAAGGAGGAGATGATAAT
AAGCGAGAACGCCTCGAAAAACTCGTCCGTGATGAGTTAGAAACCTGGGA
CAGCGAGACCGCTTTGAAACGACCTGCTAGCTCCaacaaaaaatccaagg
ggAGCTCAGTTTCAATTAAAGAGGATGCTTCCATTCCAAAATAAGAGGAT
GCTTCCATTCCAAAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000240_pilon | genome | sc0000240_pilon:88641..93593 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2086-2109:4930 |
| Aaloc | 1792-2085:4361 |
| Aaloc | 1639-1788:4030 |
| Aaloc | 1522-1638:3595 |
| Aaloc | 1168-1518:3013 |
| Aaloc | 985-1164:2539 |
| Aaloc | 586-984:1947 |
| Aaloc | 361-582:1575 |
| Aaloc | 103-357:1000 |
| Aaloc | 46-102:466 |
| Aaloc | 1-42:1 |
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