XLOC_013552 (mRNA) -

Overview


Name	XLOC_013552
Unique Name	XLOC_013552
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000345_pilon:101164..104394-
coding sequence from alignment at sc0000345_pilon:101164..104394-

mRNA from alignment at sc0000345_pilon:101164..104394-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_013552 ID=XLOC_013552|Name=XLOC_013552|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3231bp|location=Sequence derived from alignment at sc0000345_pilon:101164..104394- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCAATATCGAAGCTAGTAAGGAGAAGAAGAAGGAGCGTACGCAAAT
TTATGACATGTTCGATGAGAGTGCGCGGCTTGGAAGAGACCGCGATGACG
TCATGCAAGACGTAGAAAACTGGTTCGCCATATCAACAGATGAATTGGAC
AACTTTTGTAACCTGAAGCCAAATGTCTCAAGCGAAGAACTCATGAATGA
CGATTATTTCATGCGAATACATAAAGCGTTTCGCCGATCAAGCAGCTCTG
TTCAAAAATTGATTCAAGTTTTACAGAAAAAGCTGTTTAGTGACGCAAGT
AGCGGTGGCAACACAGGTGCTGGTAACGGTGGCAACAAACAGAATATGTC
GCGGTATGAAAAGCGGAAAGCCTTTGCCAGTCGAAGTCGTTTGAATTTGA
CAGGGCGTTCACAACAACAGTGCAATATGGTTGCCGAATGTGATTCGATC
GATGTTGGTGGTGGCACTGAAACCATCAATGAAAATGTGGCCCTCAATAA
CGGTGACGTAGAGATGAAAAGTTCCCAGGAGAGTTTATCGACCAATCAAA
CCAACGCAGCTGCAGCTGAACACAAGATTAGGAATTTCACCAAGAAGTTG
TATACAGAGATAGAGTTACAGCTATGGAAGAATATGCAGCCAGCACTAAA
GAATATTGCAACTCTGGTCAACGACGGTGCAAAGTATGGCGCTTCTACTC
AAGCCAAAGGTTGTTATAAAGTTGGTGGCCGCCAGATGAAAATTCTTACA
CCAGTAATCGAGAAAAAGATTGAATGGGTTTCAGAGCTGGAACTTAAAGT
TCGGCAACAGACTACTGAGATTTCATCATTGAAGGCTGACGCACAAAAAG
CCGCCGAAGACAAGATTCAACTGCGTCAAACTTTGACGGAGAACGAGCTA
TTGCGGAAAGACTTGGACGGATTACAGCGTGAGTTGGTCTTATCTGAGCA
ACGTTTACAAGACGCCCTTACGGAGCTGGAAAGAGGGAACACGCCTTTGA
TTGAGCAACGTCCAACATCGCGTCATGTTTCGATTAAGCTGCCAGAGGAA
GTTCTCATTTCTGCCCCAGGGAAAGAAGGAAAGAAAACTGAGAAAGAAGA
AGGAAAGAACGACGAGAGGAGCGAAGAAAAGAAAAAACGGAAGAAAGGCG
AAAAGATCCAGAAAGAAGAAAATGTGTCTAGGCGGGGTAGCCCTCAAGAT
ACGTCAAAATCCATTCATGACGTTCATGTTGATTCACTAACTGAGGTCAA
TTCACTACCTGAAGTTGCATCCTTGGCAGTGACCAAGAAAATAGTAAGTG
CCGTGCCCATAGATGACCGGCAAGAACCGTTGGAGGTCATGCGTGAGAAT
CTAAAGAAGAAGTTATCAAGCCGTCGTAGTGTATTGGTGCCCGGTAGCCG
TGTCCCGAGTCGAGCATTGAGTACGGTCTCAGCAATGCCAAGTGTACGGC
ATACGAACACACCGCAATCGATTGCAAGTGGTTACGATTACGATACCGAA
TCGGTTTCATCACATGAGCATTTTGTATCCGTTGTCAAATCGGAAGATCC
TCATTCTGACGAGCTACGTTTGCAGATTCACGCGTTACGCGAAGAGTTAC
GGCAATCAGATGATCGGTATTACGCTCAACGAGCTGAACTTGAAAATCTG
CGTGAAGTCATTGCGTCAAACTCGGCAGCCGCTGCTGATCAAATCATGAA
AGAAAAACAAAAGAAACTAGAGAAGCAGTTAGAGCAACTGCAACAGTCAG
AGAAACTGATGAAGATTGAACTGGCGGAAAACCAAACTGATTTAAGCTCC
AAGCAACAATACATCGAGCTACTGCAAATGCAAATCAAAGAACTTTTGAA
AGAGCGTGAAATGATAAAACCTGGAAGTCAGTGCACAGATCTTGAAAAAT
GTGTTTCACCACCCAACGTTAACATCCCGCTCAGCGTGGACATTGCGCAA
TTACCACGTGACCAACTAATCAAGAAGATTACGCAACAGTCTGAGGTAGA
ACTTCACCGTCTACGTAAATTCATCGTGCGCGAGCAGCAACGTTTCCAAG
CTAACCTACGCCGTGCAAACTTGGAGTCTGGGAAACAAGTTTCTAAGATG
AAAAGTGAGCAAGCGCAGCTAGTGCGTGAAGTGAACCATTTTAAACAAAG
TATCGAGCAGATGGTTCTAAAGGCTGAAGTTGGTGGTGACGATCTTTCCC
ATGATCAAATGTCCGCTCTGATAGCCATATCCGACGGAGCAAATATTTTA
GATGGGCTTTCTAGTCTAGAACGCAAACTGCATTACATTTTCTTACAAAA
GAAGATGCTTATGAAGCATTCGAATGCCAATAAAGCGAATGCAGAAAAGG
AGCTAGAGCAATGTCGCCTACAGTTGCAGAAGCGGGCGACAGAGTGCGCT
GATCAACAACAACTGGTTAAGCGAGTCGAAAACCGTAATGTTGTGTTGGC
GAGACAATGTCAACAATTATCGTATTTGAATGATAATCTACAACGTGAGC
TGGAGCCTTGTAAAGCCATGGTGCAGAAATATGCTGAGATACGAGAAAAA
GTTGAACTTCTGGAATTAAATGAAAAAGAACAATCTAACGAGACGAAAGA
ATTAACTAAGAGTTTAGAGGCTGATCGAAACCGCCTGAAACGCGAAGTCA
ACCACTTAGCAATGTCACAAATATGCCAGTTACGTCAAAATACACCAAAT
AGGTTGTGGAGTCGCCTCAATAGCCGACAAAAAGGTTTGTTGATCGAGAA
AGCTCATACTATGAATCAAATCAATCATATGCGGCGCGATGAGGCCACAG
ACGTCTTACAGTATTGTAACGAACTCATTCTGCAGAGATTCGCTGATTTG
GTGAGTCGCTACATGGATCTATGTAAATGGAATCGCATTAAAACAACCAT
CAAAACATTGGCAGAGAAGAACCATAACAACAAGCGCTTTGCAAAGTACC
TGGAAACCATGGAGAAACGACATAGCAACACTCAACAAATATGGCAGAAA
CACTGCGAGAATGTGAAAGTAGAGCGCGATAAGGCTTTCTTATTATTGAA
ACAAGTTCTTAGCGATCGCTTGGGTGACTTTCTCGTGCCCAGTATCCAAC
TATCCAAACCAAATTACCCGAAACCACCGAAGTGTCAGAACCAAGGTACA
CCAGTCTGCTTATCGCCAAAACCGGTCAGTCATGTATCCGGACGCAGCCT
TGCAGAGCAATCGAACAAAGAATCTTATTGG

Coding sequence (CDS) from alignment at sc0000345_pilon:101164..104394-

>XLOC_013552 ID=XLOC_013552|Name=XLOC_013552|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6462bp|location=Sequence derived from alignment at sc0000345_pilon:101164..104394- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCAATATCGAAGCTAGTAAGGAGAAGAAGAAGGAGCGTACGCAAAT
TTATGACATGTTCGATGAGAGTGCGCGGCTTGGAAGAGACCGCGATGACG
TCATGCAAGACGTAGAAAACTGGTTCGCCATATCAACAGATGAATTGGAC
AACTTTTGTAACCTGAAGCCAAATGTCTCAAGCGAAGAACTCATGAATGA
CGATTATTTCATGCGAATACATAAAGCGTTTCGCCGATCAAGCAGCTCTG
TTCAAAAATTGATTCAAGTTTTACAGAAAAAGCTGTTTAGTGACGCAAGT
AGCGGTGGCAACACAGGTGCTGGTAACGGTGGCAACAAACAGAATATGTC
GCGGTATGAAAAGCGGAAAGCCTTTGCCAGTCGAAGTCGTTTGAATTTGA
CAGGGCGTTCACAACAACAGTGCAATATGGTTGCCGAATGTGATTCGATC
GATGTTGGTGGTGGCACTGAAACCATCAATGAAAATGTGGCCCTCAATAA
CGGTGACGTAGAGATGAAAAGTTCCCAGGAGAGTTTATCGACCAATCAAA
CCAACGCAGCTGCAGCTGAACACAAGATTAGGAATTTCACCAAGAAGTTG
TATACAGAGATAGAGTTACAGCTATGGAAGAATATGCAGCCAGCACTAAA
GAATATTGCAACTCTGGTCAACGACGGTGCAAAGTATGGCGCTTCTACTC
AAGCCAAAGGTTGTTATAAAGTTGGTGGCCGCCAGATGAAAATTCTTACA
CCAGTAATCGAGAAAAAGATTGAATGGGTTTCAGAGCTGGAACTTAAAGT
TCGGCAACAGACTACTGAGATTTCATCATTGAAGGCTGACGCACAAAAAG
CCGCCGAAGACAAGATTCAACTGCGTCAAACTTTGACGGAGAACGAGCTA
TTGCGGAAAGACTTGGACGGATTACAGCGTGAGTTGGTCTTATCTGAGCA
ACGTTTACAAGACGCCCTTACGGAGCTGGAAAGAGGGAACACGCCTTTGA
TTGAGCAACGTCCAACATCGCGTCATGTTTCGATTAAGCTGCCAGAGGAA
GTTCTCATTTCTGCCCCAGGGAAAGAAGGAAAGAAAACTGAGAAAGAAGA
AGGAAAGAACGACGAGAGGAGCGAAGAAAAGAAAAAACGGAAGAAAGGCG
AAAAGATCCAGAAAGAAGAAAATGTGTCTAGGCGGGGTAGCCCTCAAGAT
ACGTCAAAATCCATTCATGACGTTCATGTTGATTCACTAACTGAGGTCAA
TTCACTACCTGAAGTTGCATCCTTGGCAGTGACCAAGAAAATAGTAAGTG
CCGTGCCCATAGATGACCGGCAAGAACCGTTGGAGGTCATGCGTGAGAAT
CTAAAGAAGAAGTTATCAAGCCGTCGTAGTGTATTGGTGCCCGGTAGCCG
TGTCCCGAGTCGAGCATTGAGTACGGTCTCAGCAATGCCAAGTGTACGGC
ATACGAACACACCGCAATCGATTGCAAGTGGTTACGATTACGATACCGAA
TCGGTTTCATCACATGAGCATTTTGTATCCGTTGTCAAATCGGAAGATCC
TCATTCTGACGAGCTACGTTTGCAGATTCACGCGTTACGCGAAGAGTTAC
GGCAATCAGATGATCGGTATTACGCTCAACGAGCTGAACTTGAAAATCTG
CGTGAAGTCATTGCGTCAAACTCGGCAGCCGCTGCTGATCAAATCATGAA
AGAAAAACAAAAGAAACTAGAGAAGCAGTTAGAGCAACTGCAACAGTCAG
AGAAACTGATGAAGATTGAACTGGCGGAAAACCAAACTGATTTAAGCTCC
AAGCAACAATACATCGAGCTACTGCAAATGCAAATCAAAGAACTTTTGAA
AGAGCGTGAAATGATAAAACCTGGAAGTCAGTGCACAGATCTTGAAAAAT
GTGTTTCACCACCCAACGTTAACATCCCGCTCAGCGTGGACATTGCGCAA
TTACCACGTGACCAACTAATCAAGAAGATTACGCAACAGTCTGAGGTAGA
ACTTCACCGTCTACGTAAATTCATCGTGCGCGAGCAGCAACGTTTCCAAG
CTAACCTACGCCGTGCAAACTTGGAGTCTGGGAAACAAGTTTCTAAGATG
AAAAGTGAGCAAGCGCAGCTAGTGCGTGAAGTGAACCATTTTAAACAAAG
TATCGAGCAGATGGTTCTAAAGGCTGAAGTTGGTGGTGACGATCTTTCCC
ATGATCAAATGTCCGCTCTGATAGCCATATCCGACGGAGCAAATATTTTA
GATGGGCTTTCTAGTCTAGAACGCAAACTGCATTACATTTTCTTACAAAA
GAAGATGCTTATGAAGCATTCGAATGCCAATAAAGCGAATGCAGAAAAGG
AGCTAGAGCAATGTCGCCTACAGTTGCAGAAGCGGGCGACAGAGTGCGCT
GATCAACAACAACTGGTTAAGCGAGTCGAAAACCGTAATGTTGTGTTGGC
GAGACAATGTCAACAATTATCGTATTTGAATGATAATCTACAACGTGAGC
TGGAGCCTTGTAAAGCCATGGTGCAGAAATATGCTGAGATACGAGAAAAA
GTTGAACTTCTGGAATTAAATGAAAAAGAACAATCTAACGAGACGAAAGA
ATTAACTAAGAGTTTAGAGGCTGATCGAAACCGCCTGAAACGCGAAGTCA
ACCACTTAGCAATGTCACAAATATGCCAGTTACGTCAAAATACACCAAAT
AGGTTGTGGAGTCGCCTCAATAGCCGACAAAAAGGTTTGTTGATCGAGAA
AGCTCATACTATGAATCAAATCAATCATATGCGGCGCGATGAGGCCACAG
ACGTCTTACAGTATTGTAACGAACTCATTCTGCAGAGATTCGCTGATTTG
GTGAGTCGCTACATGGATCTATGTAAATGGAATCGCATTAAAACAACCAT
CAAAACATTGGCAGAGAAGAACCATAACAACAAGCGCTTTGCAAAGTACC
TGGAAACCATGGAGAAACGACATAGCAACACTCAACAAATATGGCAGAAA
CACTGCGAGAATGTGAAAGTAGAGCGCGATAAGGCTTTCTTATTATTGAA
ACAAGTTCTTAGCGATCGCTTGGGTGACTTTCTCGTGCCCAGTATCCAAC
TATCCAAACCAAATTACCCGAAACCACCGAAGTGTCAGAACCAAGGTACA
CCAGTCTGCTTATCGCCAAAACCGGTCAGTCATGTATCCGGACGCAGCCT
TGCAGAGCAATCGAACAAAGAATCTTATTGGATGTTCAATATCGAAGCTA
GTAAGGAGAAGAAGAAGGAGCGTACGCAAATTTATGACATGTTCGATGAG
AGTGCGCGGCTTGGAAGAGACCGCGATGACGTCATGCAAGACGTAGAAAA
CTGGTTCGCCATATCAACAGATGAATTGGACAACTTTTGTAACCTGAAGC
CAAATGTCTCAAGCGAAGAACTCATGAATGACGATTATTTCATGCGAATA
CATAAAGCGTTTCGCCGATCAAGCAGCTCTGTTCAAAAATTGATTCAAGT
TTTACAGAAAAAGCTGTTTAGTGACGCAAGTAGCGGTGGCAACACAGGTG
CTGGTAACGGTGGCAACAAACAGAATATGTCGCGGTATGAAAAGCGGAAA
GCCTTTGCCAGTCGAAGTCGTTTGAATTTGACAGGGCGTTCACAACAACA
GTGCAATATGGTTGCCGAATGTGATTCGATCGATGTTGGTGGTGGCACTG
AAACCATCAATGAAAATGTGGCCCTCAATAACGGTGACGTAGAGATGAAA
AGTTCCCAGGAGAGTTTATCGACCAATCAAACCAACGCAGCTGCAGCTGA
ACACAAGATTAGGAATTTCACCAAGAAGTTGTATACAGAGATAGAGTTAC
AGCTATGGAAGAATATGCAGCCAGCACTAAAGAATATTGCAACTCTGGTC
AACGACGGTGCAAAGTATGGCGCTTCTACTCAAGCCAAAGGTTGTTATAA
AGTTGGTGGCCGCCAGATGAAAATTCTTACACCAGTAATCGAGAAAAAGA
TTGAATGGGTTTCAGAGCTGGAACTTAAAGTTCGGCAACAGACTACTGAG
ATTTCATCATTGAAGGCTGACGCACAAAAAGCCGCCGAAGACAAGATTCA
ACTGCGTCAAACTTTGACGGAGAACGAGCTATTGCGGAAAGACTTGGACG
GATTACAGCGTGAGTTGGTCTTATCTGAGCAACGTTTACAAGACGCCCTT
ACGGAGCTGGAAAGAGGGAACACGCCTTTGATTGAGCAACGTCCAACATC
GCGTCATGTTTCGATTAAGCTGCCAGAGGAAGTTCTCATTTCTGCCCCAG
GGAAAGAAGGAAAGAAAACTGAGAAAGAAGAAGGAAAGAACGACGAGAGG
AGCGAAGAAAAGAAAAAACGGAAGAAAGGCGAAAAGATCCAGAAAGAAGA
AAATGTGTCTAGGCGGGGTAGCCCTCAAGATACGTCAAAATCCATTCATG
ACGTTCATGTTGATTCACTAACTGAGGTCAATTCACTACCTGAAGTTGCA
TCCTTGGCAGTGACCAAGAAAATAGTAAGTGCCGTGCCCATAGATGACCG
GCAAGAACCGTTGGAGGTCATGCGTGAGAATCTAAAGAAGAAGTTATCAA
GCCGTCGTAGTGTATTGGTGCCCGGTAGCCGTGTCCCGAGTCGAGCATTG
AGTACGGTCTCAGCAATGCCAAGTGTACGGCATACGAACACACCGCAATC
GATTGCAAGTGGTTACGATTACGATACCGAATCGGTTTCATCACATGAGC
ATTTTGTATCCGTTGTCAAATCGGAAGATCCTCATTCTGACGAGCTACGT
TTGCAGATTCACGCGTTACGCGAAGAGTTACGGCAATCAGATGATCGGTA
TTACGCTCAACGAGCTGAACTTGAAAATCTGCGTGAAGTCATTGCGTCAA
ACTCGGCAGCCGCTGCTGATCAAATCATGAAAGAAAAACAAAAGAAACTA
GAGAAGCAGTTAGAGCAACTGCAACAGTCAGAGAAACTGATGAAGATTGA
ACTGGCGGAAAACCAAACTGATTTAAGCTCCAAGCAACAATACATCGAGC
TACTGCAAATGCAAATCAAAGAACTTTTGAAAGAGCGTGAAATGATAAAA
CCTGGAAGTCAGTGCACAGATCTTGAAAAATGTGTTTCACCACCCAACGT
TAACATCCCGCTCAGCGTGGACATTGCGCAATTACCACGTGACCAACTAA
TCAAGAAGATTACGCAACAGTCTGAGGTAGAACTTCACCGTCTACGTAAA
TTCATCGTGCGCGAGCAGCAACGTTTCCAAGCTAACCTACGCCGTGCAAA
CTTGGAGTCTGGGAAACAAGTTTCTAAGATGAAAAGTGAGCAAGCGCAGC
TAGTGCGTGAAGTGAACCATTTTAAACAAAGTATCGAGCAGATGGTTCTA
AAGGCTGAAGTTGGTGGTGACGATCTTTCCCATGATCAAATGTCCGCTCT
GATAGCCATATCCGACGGAGCAAATATTTTAGATGGGCTTTCTAGTCTAG
AACGCAAACTGCATTACATTTTCTTACAAAAGAAGATGCTTATGAAGCAT
TCGAATGCCAATAAAGCGAATGCAGAAAAGGAGCTAGAGCAATGTCGCCT
ACAGTTGCAGAAGCGGGCGACAGAGTGCGCTGATCAACAACAACTGGTTA
AGCGAGTCGAAAACCGTAATGTTGTGTTGGCGAGACAATGTCAACAATTA
TCGTATTTGAATGATAATCTACAACGTGAGCTGGAGCCTTGTAAAGCCAT
GGTGCAGAAATATGCTGAGATACGAGAAAAAGTTGAACTTCTGGAATTAA
ATGAAAAAGAACAATCTAACGAGACGAAAGAATTAACTAAGAGTTTAGAG
GCTGATCGAAACCGCCTGAAACGCGAAGTCAACCACTTAGCAATGTCACA
AATATGCCAGTTACGTCAAAATACACCAAATAGGTTGTGGAGTCGCCTCA
ATAGCCGACAAAAAGGTTTGTTGATCGAGAAAGCTCATACTATGAATCAA
ATCAATCATATGCGGCGCGATGAGGCCACAGACGTCTTACAGTATTGTAA
CGAACTCATTCTGCAGAGATTCGCTGATTTGGTGAGTCGCTACATGGATC
TATGTAAATGGAATCGCATTAAAACAACCATCAAAACATTGGCAGAGAAG
AACCATAACAACAAGCGCTTTGCAAAGTACCTGGAAACCATGGAGAAACG
ACATAGCAACACTCAACAAATATGGCAGAAACACTGCGAGAATGTGAAAG
TAGAGCGCGATAAGGCTTTCTTATTATTGAAACAAGTTCTTAGCGATCGC
TTGGGTGACTTTCTCGTGCCCAGTATCCAACTATCCAAACCAAATTACCC
GAAACCACCGAAGTGTCAGAACCAAGGTACACCAGTCTGCTTATCGCCAA
AACCGGTCAGTCATGTATCCGGACGCAGCCTTGCAGAGCAATCGAACAAA
GAATCTTATTGG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_013552	XLOC_013552-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000345_pilon	genome	sc0000345_pilon:101164..104394 -

Properties


Property Name	Value
Aaloc	1-3231:3232

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XLOC_013552 (mRNA) -