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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000250_pilon:3411..8757+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_013356 ID=XLOC_013356|Name=XLOC_013356|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5347bp|location=Sequence derived from alignment at sc0000250_pilon:3411..8757+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcaGAAAATTCACTCAATAACATCAACATTATCAGACAAATTCAAGG
TATGTTAATATTATTTAAATTCTAACtgtctttttaacttttcacaattt
tttaaaaaatatacagtTTGAAAATTGTTCTGCTTACCACACTACCTTAT
TAATTAGATGGAGCTAAAATTTTAtacatctttttttttgcattacAAAC
TATATTTGAAAACTACATATTTgcattttcaattcttttttttaaaagtc
attaatttttttgcagGAATTGAATTTATGAATGATCAAATTGTATGTTG
ATTTAGCAAGACACAGAAAAGCAAAAATCTGTTCTTACAAATATTTGGca
attaattttaaagattatCTTTAAAACTAGGAATGTACAACGACTGTATT
ATTATATCTTCTAGATTTAGTTTAAAACTCCTCCAAGAAACACCAGCCTG
CTTTCCAGACTGGCTCTGGAGAATGTCAAAACTAAAAGCATTcaatttat
ttggaatttagGTCAAGTATCAAGTCTTGATGAGTGCAAAACCAAAGAAG
ATATTTCAAACCATTGTCAAAGTCTAATGAAGTCTTTAGAAACAGTTCAA
AATGTTATCAACACAAAGAATGAGGGTCAACTACAAATTTTACATGAAAC
TGGATTAAAACTATGGAATTTAGTGGTAGCAAAGAAACTAAATAAGCTAG
TTGAGCGTGTTGCAATTGCTCAGGGTATGTTTATTTGATTTCACCAAGCA
TTTTAAAGACttctttaaaagtaataaaACGTAAATCagggtttaaaaaa
tgaaaaaatcttttcaaagaagCTGTAAATTGCAAAGTTCTATATTTTTA
CAAAGTTGTGTTTATGAAGGGTATACTTTTTCAGCAAGTTGTTTTGCAGT
TGTTTAACTATTAATTCAAAACCTcacttttttccaattttaactTGTTC
CTTTTCCACTTCAGCTAGATATGTTGCACTTCAGTTGACGTACATGGTCG
CCCTGGGTGAACATTCAAAGACAACTTCCAGGAAACAACAAACAGTATTA
AATTATTGATATCCAACATAATTCGCTTTATCCTAAATAAATTCTAGTAA
GAGATATACTTAAACCTCCTTAGCCAACAATTTGAAACTTACGCCATTGC
ATAATCCTACCTAGTAGAACATTGTAATGACTTCAACATTTCAATAATAC
TGCCCAGGCGAAATCGTACAAATtacatatttttgatatttgggtTTGGT
TGAAGGTTATAGTATAGGTTATATTTTACgagtttcaaaatcaatttacc
ATTTATAGTATCTACAACACATGTCACTATGCTAAATGTAAGATACAAGT
ATTGTGTATGATTTATTCTTTTGTTATTAGATGGCAATGAAAGTTGGAAA
AGATTGGTTAGGTAAAATCTGTTCTCcttattatttttcaaagatttgag
TTTGCTCTAGTGGAAATGGTTTAAGGAaattctttttcagattttctgat
aaatatcaTCTAAAAATACCTACATAAAGACTTTTATTCACATGATCCCT
TGAATGGGTCTGATGTCTGGTGTCTGGTGTTGTAATTTTTTCAATCTTGA
ACAATTTTTATATAACTTTCTTTTTTAGTTGTAGATTGCTCAAGCAGCAC
CAGTTAAGAAAAGATTCAGAATTGATAGACCAAAAGAGTTAATAGTTTCT
AGATCTTTCTAGTGATTTTTGAAGTTAAGCTGTCTCATTTTGTCATTTGT
GTTAGATGGCTAGTATTTAGCATTAAAAAATCTTTGccttttatttttag
aatgtGGCAATAGTTCTTATTCAGAAGCTTGTTTTATCATCAGCACAGAA
GTTAGTATCTTTTAAATGGAGATCGTTAGAATTATTTAGTTCTGGTTAGA
AACACTTCCACCATAAGATATCTTAGTTTTGGTCAGATTACTACTACATT
CTGCCAAATGAAAGGTGCTTTTGGAAAGAAATTTCATTTGCTCTTATCAT
TACAGTTTATCCATATTGGAAATGAAGAGCTAGCATTTCTAAACAGTGTT
TTGTTCAATCTTGAAGCAATGCAGTATATTGTAGATTTTGTATCAATGAA
TTTAGTTTATCTATTGTTTCTTCCAAACATTTTTAATCAGACGAAATTTT
CATATTCTCCTTTTTGCAGTGTTACATCAAGCTAATGAAATTGTTGGAAA
ATGGCGAATCTGAAACACATTTGAGTATTACTGAAGAACAAATTAAACAA
TGTCATGCACAAATGATGCAAGTCTTCTTGTTCAGGGCAGAGTTGGTAAG
GAAACTTgtgatattttttaaagaaaaaatgctGATATCAGCAGAAAAAG
AGCTTTACTGGCCCTAtaaaaacttttactttttcacttttgatcccatt
ttcatgttcactttttGTGCTCAATCTACTGGGCGAAGAGTTTcttcatt
caaaaaatttaaaaaatctacatacttgtaaaaggggtgtatgaaaaaaa
cccaaaaaaaattatcacctGTTCAGCCTAGTAGATAGTAGTCTAAAAAG
TCATGATTTCCTCAGTACTTTTTAAGGTGAGTTATGGCCCTTTTTTCCTG
GATATCAAtgatatttttccttctttttggtCTGGTAGTAGAATTCCAAG
CCAAATGCGTAACCTTTCCCAGGTAGACAAATTTGAAGTCTTAAGACTCG
CATGCATTTCGATTTGCAGGTTGAATCTAtcactttctgtttttttgggt
tttatatttttgaatacCTGCAGTAAATGTTACTTTCAATGAAGCATTTG
CATGAAAATCCTGCAACTTCTGTAGGAAATAAGTAGTTTCATAGAAGAAG
ATGCATAGAAGATTCGACTCTAGTCTTatttatttgctcttttaaCTTGG
TAGAGTATttattttatggaatttccctATTGAGTACGGAAACTTGCCTA
TGAGAAACTTTTACAGAATCTTTTCAATGATTACGATGAGTTACTAGACT
ACACAGCCTTTGATCTCAGGAAAATTGTTCCATAAAAGTTGTCTTGTTTC
ATTTTATAGGCTTTACGAAATAGTCAACATGCTACTGCAATGGACTTTGC
AAACAAAGCCAAGGAACTTGTTTTCAAAGAACAGTTAAAGGTACCAAAGC
AtacattattttgattttaagataGAGAAAGATATCTTATTCGTCACTCA
ATTGCAATAATCTACTACCGATAATTGTTTCTAATGTTTGTTCACTTCAA
TTATTCCTTTTTTACGGTAATCTATGCAATTCTTGTAATTTCTAACAAAT
GGATAGTTTTATTCAATCTTAGTTCAAGATCTGTATTTACATTTTAGCCA
GTACAGAAATGTCttctaattttcaaactttcattatattttcaattttt
ttcaggcTGATTCTTTGTGTACAGCTTCATACAACTTTGGTTTGGAATGC
TATCAGAAAGAACTCTATAATTATAGCAAAGAATGGCTAAAGTAAGATTT
GTCCCTCATTCATTgaaattttctctaaaatttccacctaacccatagtc
tgcggtcCATTTATTaaggctttttgatagactggatggcgcgatcaAGT
GGCCTGTAGTatgcactgacctttatataaccctggaccaagcaatatct
gccatctttgattggagttttattggaatttggtacccgaggagaagcca
ttgcaatgttaaaaattaacgtctaacgccgcttcatcatcaaaagattt
tgaggaaaagtagacatagcgctctcgatgcatttacaccgctatcgagt
agtgccgccattagggtgccaattttcaaaaaactccgatcaaagatttt
gcttggctgggattgagaagcttggtccagggtatataaaggtcagtcgT
AGTATgtggactgtaaaacagtccgtcAGATTCGAGTTGTTTTtaaaagg
taaaaaaagaatgaagcaaagttttaattgaaatgTTATCTATCTGTTAT
TCCTCTTATTCACATCTTTGTCTAATTTACGGACAGAAAAGCTTTTAGAA
TTATTGGCTGTGATGTGTTTGAATTATGTTATTTGGGGCTTTGTTCTAAC
ACTTGAAGATaaggtgtttttatttataagctCTGGCAATAATGCTTAAT
ATTAGTTGCAAAGCCACAGGttttttaagcttctttttttaattaatttt
atataagtgtaatttcatgtttttatcatttaCAGACAGTCCATTGAAAT
TGGGAAAGAAACGCCAACTGTCAAAAGCGAACAACAGGTAAagtcaaaag
ttttaaaaacagatttTAACTATTCTCATTAGTATGTTTACGATATTTGA
GTATTATATAACTAGGATTTAGAtaataattcatttttgatttgttttta
taaaagtaaGAGTTTATGACAGCATTAGGACAATTGGATATGCGCATTGC
tcatgttttgaatattgaatttctccagatacatcgcatgcgcactAGGG
TTTTagtgaaacaatagagagtttcgaaacctaagccaatcagctgtgtt
ttaaacattcttttattcgaaatctctattgataaacttcttttgttaag
aacttttattaaattattaaacGCTATTATGTTTAATccgattaaaaagc
aaattcccGGTGGGGGCCACTAGTGGCCGcatatagcagtgcctatagac
caagagtaaggcctaaaagcctggagctgtatattatgtagactatagga
caatcaaacaaaatgagACTCCAGAGAGCGAAGTTGAGCCAAAAACATTC
AGCATTTTCGCGTCTGAAAAGATTGTTATCAAATTCTAGCCCTTCAGCCA
GGGAGGCTTTgtctaaagatttttttgagtGCTCCCTTCCCTCTGACACA
AACAGGATTAGCCTAGAGGGGGTTAATTTaaaaaaccctacatttactaa
aaaaaagacaaaaagagcgacaaatttcataaaaaacacgACAAGtttcg
ccatccacaacccTAACCTGGTTAGTTTGTcccccccTACGAGTGCATTC
Ctatttgtttatcacgggaattatcccatatggtttaaagaacgaaaaat
tacgcatgcgtgttacaatgcaggattctttagaggaacagactgacTAC
TCAACGGCTCGCAAGACCTGAGCAATAAGCAATAAAGGATCAAGGGGTAA
AGAAATAGGATTCAATATTTTACTGATCTGACTGATTATCTATCAGATCT
CTTTATTTCATGTTAGGCTTCGTCACGCCAACTTCTTGCTCTTGTGTATG
TAGAACTGAAGGGTGATGATAATTATGCAAACGCTTTGAATGTCATT Coding sequence (CDS) from alignment at sc0000250_pilon:3411..8757+ >XLOC_013356 ID=XLOC_013356|Name=XLOC_013356|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1698bp|location=Sequence derived from alignment at sc0000250_pilon:3411..8757+ (Clytia hemisphaerica_ch_hm2_pilon)
atggcaGAAAATTCACTCAATAACATCAACATTATCAGACAAATTCAAGa
tggcaGAAAATTCACTCAATAACATCAACATTATCAGACAAATTCAAGGT
CAAGTATCAAGTCTTGATGAGTGCAAAACCAAAGAAGATATTTCAAACCA
TTGTCAAAGTCTAATGAAGTCTTTAGAAACAGTTCAAAATGTTATCAACA
CAAAGAATGAGGGTCAACTACAAATTTTACATGAAACTGGATTAAAACTA
TGGAATTTAGTGGTAGCAAAGAAACTAAATAAGCTAGTTGAGCGTGTTGC
AATTGCTCAGGGTCAAGTATCAAGTCTTGATGAGTGCAAAACCAAAGAAG
ATATTTCAAACCATTGTCAAAGTCTAATGAAGTCTTTAGAAACAGTTCAA
AATGTTATCAACACAAAGAATGAGGGTCAACTACAAATTTTACATGAAAC
TGGATTAAAACTATGGAATTTAGTGGTAGCAAAGAAACTAAATAAGCTAG
TTGAGCGTGTTGCAATTGCTCAGGCTAGATATGTTGCACTTCAGTTGACG
TACATGGTCGCCCTGGGTGAACATTCAAAGACAACTTCCAGGAAACAACA
AACACTAGATATGTTGCACTTCAGTTGACGTACATGGTCGCCCTGGGTGA
ACATTCAAAGACAACTTCCAGGAAACAACAAACAATGGCAATGAAAGTTG
GAAAAGATTGGTTAGATGGCAATGAAAGTTGGAAAAGATTGGTTAGaatg
tGGCAATAGTTCTTATTCAGAAGCTTGTTTTATCATCAGCACAGAAaatg
tGGCAATAGTTCTTATTCAGAAGCTTGTTTTATCATCAGCACAGAATGTT
ACATCAAGCTAATGAAATTGTTGGAAAATGGCGAATCTGAAACACATTTG
AGTATTACTGAAGAACAAATTAAACAATGTCATGCACAAATGATGCAAGT
CTTCTTGTTCAGGGCAGAGTTGTGTTACATCAAGCTAATGAAATTGTTGG
AAAATGGCGAATCTGAAACACATTTGAGTATTACTGAAGAACAAATTAAA
CAATGTCATGCACAAATGATGCAAGTCTTCTTGTTCAGGGCAGAGTTGGC
TTTACGAAATAGTCAACATGCTACTGCAATGGACTTTGCAAACAAAGCCA
AGGAACTTGTTTTCAAAGAACAGTTAAAGGCTTTACGAAATAGTCAACAT
GCTACTGCAATGGACTTTGCAAACAAAGCCAAGGAACTTGTTTTCAAAGA
ACAGTTAAAGgcTGATTCTTTGTGTACAGCTTCATACAACTTTGGTTTGG
AATGCTATCAGAAAGAACTCTATAATTATAGCAAAGAATGGCTAAAgcTG
ATTCTTTGTGTACAGCTTCATACAACTTTGGTTTGGAATGCTATCAGAAA
GAACTCTATAATTATAGCAAAGAATGGCTAAAACAGTCCATTGAAATTGG
GAAAGAAACGCCAACTGTCAAAAGCGAACAACAGACAGTCCATTGAAATT
GGGAAAGAAACGCCAACTGTCAAAAGCGAACAACAGGCTTCGTCACGCCA
ACTTCTTGCTCTTGTGTATGTAGAACTGAAGGGTGATGATAATTATGCAA
ACGCTTTGAATGTCATTGCTTCGTCACGCCAACTTCTTGCTCTTGTGTAT
GTAGAACTGAAGGGTGATGATAATTATGCAAACGCTTTGAATGTCATT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000250_pilon | genome | sc0000250_pilon:3411..8757 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 769-849:5267 |
| Aaloc | 718-768:4237 |
| Aaloc | 631-714:3406 |
| Aaloc | 550-630:3060 |
| Aaloc | 424-549:2170 |
| Aaloc | 376-423:1803 |
| Aaloc | 343-372:1381 |
| Aaloc | 265-342:967 |
| Aaloc | 52-261:514 |
| Aaloc | 1-48:1 |
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