|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000250_pilon:36572..43165+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_013354 ID=XLOC_013354|Name=XLOC_013354|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6594bp|location=Sequence derived from alignment at sc0000250_pilon:36572..43165+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATTATGGAATGATTACAAAAGCCTATTGAactatgttttcttttc
aagcGATGACGTCATCCAAAAGTAAGTGAAAACGTTTTACTAGATTGCTT
TACCTTGCTCTTTATGGGACTCTTGCGTTTCGTTCCTATTTTTTGTGGCT
TCTCACTTGCCACTGTTTAAAAAGTCCATGTTATGGAATTCACCAGTGTC
ATTGTGGCGGGGTATGGGGACAAGAGCGGCAGTttagtatctttaaaaaa
ttgccTCCTCAGTTCTCCAAAATTCTGGTCGATTCACCACGCTACTAACC
ATACCTTTCCCTTGATAGGAACTCACAAAGCCTATTGTGCTCTTATCTGG
TTCAATACCCATCTTACTAATATTTCATCCATATTTGATTTGTCTGTCTT
AGATCCTTTTGAAATACAGTCAAagtattttcctaaaaaagaacTGACCT
TCTAGTACTATTTTTCAGATTTATAGATATCGCTTTTACTTACTTTCAGA
AATACAAAGGAACAAGCTGACTTCTGGACGTTCCTTGAGAAGTatgagaa
attcaaaaataggAAGAAAAGTCAACCAGGTATTGTGTACTAGCGGGTCc
agtaaaaaaattatacacgcTCGTCAAGATATTGTTAGCTTACGGGTAAA
GATTTTGATCactgtttttaatgaattttgttattttcggtagatcaaaa
ttttccaatttttgattgactgaaccgattttaaagttttatatacTAAA
ACATAAATTAAGCTTTCCTCAATAcaacaaaaaaatactaaatttttTCA
ACACTAAAGTTATTATCCGTAAGGTAAGATCACAATATCTTGACGAacgt
gtatatattttttggCGAACCTGATAAAATATTCTTTAGTTTAGCTTGTG
TATACTACTGTACCTGCTGGTTAAAAATCCCGGTCTGGtattgtattgtt
ttagctttattgtCAAGCTTTCctttgttataaataaaagATGCCTTTTC
TTTCATCATGTTACCATTTTCGACTCTTGGTTATTTTCTAGTCACATGAT
CAAAAGCTAGGCAAAATAGACCCATATATAAGGTAAGGTAACCCATCTAT
TCATCTATACGTAAGGTCTAACTGCTAATGATAGAAAGAAACGAAAACCT
TCCAGACCGGGGGTTTTTTATGATGACTATGGTGCTATACAAATCACGAC
TTCATGATTTTCTGTAATACTCTTACTTTTATTTTCTAGAACCTTCAAAG
CTTTCCACGGAAAAGAACGAATTCGATTTTCCATCAGTATATAACAAGCG
CTataaaatcaactttgctaTCAACACAACCGAACTCAAACACAGATACA
AAGAATATGTATCAAGGAGATACGATAGATCTAAAGGTATTAGTTTATGG
CACAGTAGTGTAGTGGCTATCAATCTTGACTACCGTCCAGGAGGTCTGGG
ctcgattcccactcggtgtTGCAATTCACTTGGCAACCTTCGCCCGGGAC
ACCGGGTCAACctatgccatgtgaggggaatcggGTAGATAGAAACTGAA
GAAGCCTGTCGATGACTGCTAGGAATCGATTCCACAATACACCGTGGATG
AGGCGAGAGTGCGCTGGCCGTGTTCCCTAATTACTAACGCTGGACTAACT
CACTTGATCTGTAAAACTGTGTCAGTATCTCGCAAGCTCGCAGGCAGTAT
AAACTACAGTGTAAAGGCCGGTCTTCACTTgtgcgcgcttcgatcgcact
tttttcGCACAAAACTCCATTGACGCGATCTGACaaaacggttgaaaaaa
gttgaaatgtgttcaacttttttttcgagcgcgtgcttcatttttattac
gtaatcttttttccaagcaaaaaggattgaagctaaAAAGTGTGATCGCG
GCgggcgcaagtggagaccggttCTTGCGAGACGCCTCAACACACAACGG
GGCAACCGTTTAATTCTTTTATCAGCATTGTTAAAGACAAAGCGATATAA
ATTAATGATCTGCACTATctaatttcagaaaaatgtcATCTCTCCAATCT
CAAATAAAATAATCAACTGAAGTTGCGCGCGCTTCTTTATTTTGATGGTT
CGTTTTAATAACTGTAATACTTTTGCAAGCGCAGCATTTTTCATAGCGAT
TCAGACCTTCAGAATTCAAATATCGTTAGCCTGGCTTTAAAATAACAGTT
GCCAATTTTCACACTTAGCTTTTGATCATCttgattaaaatatttataac
aATTTCAATCATATcgtttttcacgattttgtcaTCAGATTGCAAACTTT
CAACAGACGATCTGATGGAATTCAAACAGATTTTACTTTATTATCTGGAT
TTCTTACAAAAACAAAAGGTATTGATCTAAAGTTTAAAGGAAATGCCTTT
ATAATCTGTCAAGTGGAGATAATTTACAGCAGGATATTGAATAAAATagc
agggatttttctaagtaCTTTGAGCTGCGGCCGTTTTTGTAAACTTAGAT
TTAGTTTCTAATATACTTGAAAAGGAATTTGATCAGCGAAGCTGTACATT
GATGAAGCTTGGGGACTGGTTGGTGTTCAAATGGCGAAAATCCCGAAAAG
TTTTTGATCATGTAAATTATGTTAGTTATTTTTGCTTGTAAACAACAAAC
AAGCTTACTTTTGTTAGAAaaataccttttcttttttggattgagtttca
aaaactcACTCTTAGGCTGAGTATTCTGGCCGGTATACGGAGATAAAAAA
gttcttagaaaaatccctgaatAGCATCAATTTTATAGGTTTATAACCTA
GGTTTCATATAACTGCTAACAACATCCCCAGCATTGCAATGGGAAAAAGG
GTTTGTTGTCAATATTCTCCTGGCTGATTACAGATTCTTCATCAACAATG
TCCTGTTAAATGTTCTCATCTTTTCTAGTTCAACAAATTGACGAAACTGA
AAGAAGACCAACGCAATTTACCCATTAAACAATACGAAGATGAAATTGTG
TATGCGGTCAAAACGAATCAAGTTGTCCTGGTGGCTGGTGATACCGGCTG
TGGCAAATCCACACAGGTTTTGAATTTAATCTAACCTTAACGTATCTCTC
CTATTTATTGCTTCCCACTATAGAATGCTTCACCTATGCATAACCAAGTC
TCTAAAATATAAAGAACGCCGTAATCGTTTTCCCGGGAAACACGCCTTGT
AACACCCATGTGTCACGGACCCGCTatgaccccagccccactggaaaata
tgGCAAAAGGCTCgtccccactgggaaattgactttgatttcacccccat
tcgaaattcaatgcttaaaattgcactccaaaaccatcccctaAATTTTT
TATTCCCATTGAGATTTCAGTAGAAATTTTTTATACCCGCTGCGgggaaa
agtttcaccggggctgtcaGTCAGGGGCGCCTTGTACTGCACACAGATAC
GAGTACATACGAGATTGAGATGAGTGAGCTCTTCAACTATCCGATCTTTG
AAACATGAAAGATTTTTATGATATAACCAGTTTATCACGCTAggcgacta
attcagacatagcaaaaaaataagcaaaaaataatggaaaggACAagtta
taccgggtgcaccaaaaaaaagtatacaactttgtcgagatattgtgagc
ttcaggatttaaattttttgttcattctttttttatcgcatagaggatgc
tctaacttgaattttgagctatcatacattaggtttgaaaaagtaattcg
aaaattattccaaaaaaactgatatatttttaatgtcgaaatttcaaaaa
atcattaaaaacagcaaacaaacttttttcttggcacttaccttctttac
acataaaaataccaaaaaatgtaactgtgttcatcaaaactcgttacgga
atttaagaatatggtaaaacaagctattcccatgtggaaaaatatttttg
gtaaagctgaaaaatttttttggaaatctccaagagaggtgtGGTGTGCt
acgtgagaaaatttttgaaaaaataaatcaccattcctcaactagttgct
caaagaacttgggtctgcattgagtttgctggagttgaaaatattcatga
cgtgtaaataagatggacaaaccgttggcaaaatataagataggaGAAAG
AAGAatcaaaaatacaatgaaaatgtgtttttgtcattttgtcttattta
tagcgtgattgctgtttttaatgattttttgaaatttcgacatggaaaaa
agtcagtattttggaaataactttggaactactttttcaaatttactgta
taatagctcaaaattcaagttagagcgtcctctatacaataaaaaaagaa
tgaacaaaaaatataaatcctggagctcacaatatctcgacaaatctgta
tacttttttttggtgcacccggtagtttATACCATCTGTTTTTATTTCGT
AAAatttatcgtattatcatacaTCACTGTATCAAAGccagtctccactt
tcgcgcgaaatgggtgatagtttttttcttaactttttttgcctgaagaa
aagattacgtcataaaaaagtttcgcgcgaactaaaaaaaaagttacagg
aagttctacttttttcatccgttacgtcaatttcgaccaatggaattgcc
tcatttttcaaccgaccaatgaccttacaaaaacgtcaaaaagttttcgc
tcatgttatatgaaagtggagaccggccatTAGACATATTATAAACGATC
TTTTTCTTCCTAATTGACGAGTCCTCATAACAGAAATCGATTTTTCTTCA
GGTTCCACAATATTTACTTCGAGGTGGTTTCTCAAAGATTGCGTGCACTC
AACCACGCCGAATTGCTTGTATTTCACTCGCTAAACGTGTTTCTTATGAG
ACTTTGAATGAATATCGATCTGACATCGCGTACCAGGTATCAAATTTGAT
TAAACCTTTATAACTCAAACACCTGTAACTCGATATGGccaaaattgaac
aaatttgcgATCTCGAATAAGAGAGTCTTAAATGTAGAAGAAGGTTATCT
TGTTTTGAAGTTAGTCCTAGTCGAGTGGTGACTTCGTTTCGATAAGGACC
TGATTATAGAACATTCGACTTAGGAAATGCCGAACTACGTTGACGTATTT
TACCCTTTCTGAATTGGTAGACCACTGGCTGCTCCCAGGAGAAGCTAAAC
TCAAACGGTCTCAAGAAAttttgtattcaattttttaggTTCGATTTGAA
ACAAGCAAAAGCAAAGCTACAAGGATCTTGTTTTTAACTGAAGGTAAGGC
GGCATCATTTAATTTCTTAAGTCACGTCTTAAGGAAAACTAATTCTTGTT
ACTGTAATCGCGGTTAAGTTGTCTTGCTTCTTCaagaaaatcatattttt
ggtGACGATAAAACACGAAATAAATCACGAGGAAGAACTCGCAAAGCAAA
ATTATTGAACACAGATTTGAATCGAAAGAAATGgacctttctttcttttt
agtgAGTCAGATGCAGAAGTAGGGTATCATAGTTATACCTTTAGTCCGGG
AGCTGGAGGAGGTCAACTATGACAGTCGTAGAGGCACGTGCAAACATAAT
ATCATCATGTAGCAAAAATGACTTTTTACTTCTCACAGGTCTTTTATTGC
GTCAATTTCAATCGGACCCAGACCTTTCGATGTATGACGTCATCGTTGTG
GACGAAGTCCATGAGAGACATATCAACGGTGATTTTTTGCTGGGTGTGTT
AAAATGTTTGTTAGAAAAACGAAAAGACTTGAAGTTGGTTCTCATGTCTG
CTACCATTAATATCGAGTAAGTTTATTTTAGCTTAATCTACAGTGAAGAT
TATTGTTACTTGCAGCATGGCGTAAATCATCAAATCATCCTCTTGAAAAA
ACTGACGACCTTGTGACGCTTATTCTGTAACTCTATTATTTAAATGTTCA
TAATACATTGTTGGCTTAAAATGCTACTctaaatatttcattattttcat
ggTGCCTTATTAATTTTGATAATTGACCTTTCATcgagaaaatctttttg
tcaACTCTCCTTGTGAAATCTCTTTTCCCGACAATTTAATAATGACTTTG
AATCACACTTAGCCCGAATAATCTTTTATATCCTTTTTCTTCTACAGTCT
TTTTACCAACTACTTTCGATCTGCGCCCGTCATACAGGTAAGGTTCACTC
TTTCCACCCATCtttttttCTAttggttgtttttgttttgaacatcaCTA
CTATATCTTCTTCTTATTATAGAGTTGAgaccatttaaaaaaactctttt
tgtacCTAGGCGTTCCTACAATCCCACCGTAATATTCGGCATTAAAAGGG
AAAATccctaaaaaaattttgaaatcacaaATGACTTTTAAGagacaaag
tggaagtactgaaatcaCAATTCTCGCCCGCCCTTTAGATTctaaaaaaa
cgttaaaattctcaaaattgtcAATATTATTTGGAATGATTATAAACCCT
GCATGAAATTTTTGACGGAGAAGACAAGAACGTAAAATCTTTCATTCGCT
CACTTTAGGTTCCAGGTCGTCTTTTTCCGATCGAACTGCAATAC Coding sequence (CDS) from alignment at sc0000250_pilon:36572..43165+ >XLOC_013354 ID=XLOC_013354|Name=XLOC_013354|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000250_pilon:36572..43165+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATTATGGAATGATTACAAAAGCCTATTGAactatgttttcttttc
aagcGATGACGTCATCCAAAAATGGAATTATGGAATGATTACAAAAGCCT
ATTGAactatgttttcttttcaagcGATGACGTCATCCAAAAAAATACAA
AGGAACAAGCTGACTTCTGGACGTTCCTTGAGAAGTatgagaaattcaaa
aataggAAGAAAAGTCAACCAGAAATACAAAGGAACAAGCTGACTTCTGG
ACGTTCCTTGAGAAGTatgagaaattcaaaaataggAAGAAAAGTCAACC
AGAACCTTCAAAGCTTTCCACGGAAAAGAACGAATTCGATTTTCCATCAG
TATATAACAAGCGCTataaaatcaactttgctaTCAACACAACCGAACTC
AAACACAGATACAAAGAATATGTATCAAGGAGATACGATAGATCTAAAGA
ACCTTCAAAGCTTTCCACGGAAAAGAACGAATTCGATTTTCCATCAGTAT
ATAACAAGCGCTataaaatcaactttgctaTCAACACAACCGAACTCAAA
CACAGATACAAAGAATATGTATCAAGGAGATACGATAGATCTAAAGATTG
CAAACTTTCAACAGACGATCTGATGGAATTCAAACAGATTTTACTTTATT
ATCTGGATTTCTTACAAAAACAAAAGATTGCAAACTTTCAACAGACGATC
TGATGGAATTCAAACAGATTTTACTTTATTATCTGGATTTCTTACAAAAA
CAAAAGTTCAACAAATTGACGAAACTGAAAGAAGACCAACGCAATTTACC
CATTAAACAATACGAAGATGAAATTGTGTATGCGGTCAAAACGAATCAAG
TTGTCCTGGTGGCTGGTGATACCGGCTGTGGCAAATCCACACAGTTCAAC
AAATTGACGAAACTGAAAGAAGACCAACGCAATTTACCCATTAAACAATA
CGAAGATGAAATTGTGTATGCGGTCAAAACGAATCAAGTTGTCCTGGTGG
CTGGTGATACCGGCTGTGGCAAATCCACACAGGTTCCACAATATTTACTT
CGAGGTGGTTTCTCAAAGATTGCGTGCACTCAACCACGCCGAATTGCTTG
TATTTCACTCGCTAAACGTGTTTCTTATGAGACTTTGAATGAATATCGAT
CTGACATCGCGTACCAGGTTCCACAATATTTACTTCGAGGTGGTTTCTCA
AAGATTGCGTGCACTCAACCACGCCGAATTGCTTGTATTTCACTCGCTAA
ACGTGTTTCTTATGAGACTTTGAATGAATATCGATCTGACATCGCGTACC
AGgTTCGATTTGAAACAAGCAAAAGCAAAGCTACAAGGATCTTGTTTTTA
ACTGAAGgTTCGATTTGAAACAAGCAAAAGCAAAGCTACAAGGATCTTGT
TTTTAACTGAAGGTCTTTTATTGCGTCAATTTCAATCGGACCCAGACCTT
TCGATGTATGACGTCATCGTTGTGGACGAAGTCCATGAGAGACATATCAA
CGGTGATTTTTTGCTGGGTGTGTTAAAATGTTTGTTAGAAAAACGAAAAG
ACTTGAAGTTGGTTCTCATGTCTGCTACCATTAATATCGAGTCTTTTATT
GCGTCAATTTCAATCGGACCCAGACCTTTCGATGTATGACGTCATCGTTG
TGGACGAAGTCCATGAGAGACATATCAACGGTGATTTTTTGCTGGGTGTG
TTAAAATGTTTGTTAGAAAAACGAAAAGACTTGAAGTTGGTTCTCATGTC
TGCTACCATTAATATCGATCTTTTTACCAACTACTTTCGATCTGCGCCCG
TCATACAGTCTTTTTACCAACTACTTTCGATCTGCGCCCGTCATACAGGT
TCCAGGTCGTCTTTTTCCGATCGAACTGCAATACGTTCCAGGTCGTCTTT
TTCCGATCGAACTGCAATAC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000250_pilon | genome | sc0000250_pilon:36572..43165 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 925-960:6559 |
| Aaloc | 886-924:6149 |
| Aaloc | 709-882:5641 |
| Aaloc | 652-705:5239 |
| Aaloc | 517-651:4802 |
| Aaloc | 379-516:2929 |
| Aaloc | 301-378:2291 |
| Aaloc | 154-297:1242 |
| Aaloc | 73-150:501 |
| Aaloc | 1-69:1 |
|
