XLOC_013100 (mRNA) -

Overview
NameXLOC_013100
Unique NameXLOC_013100
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000248_pilon:56774..63852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_013100 ID=XLOC_013100|Name=XLOC_013100|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7079bp|location=Sequence derived from alignment at sc0000248_pilon:56774..63852+ (Clytia hemisphaerica_ch_hm2_pilon)
CATCTTTATAACATGAAGATTTACCTACCGCGTTTTGTCACTGATTTTCG TAGAAGTGAGTTGAATCTTTCAAATTGTATTACCTCGTACCGTAAACTCT CTGATAATCACGGACGTGTATCATAAATTTCATGTGCTATAACGAAACTT TCGAAAAACTTTATGCAAAATAGTGCCAGGGTGAGATAAAATACTCTTCT TGGGGATAAGCAATAAGGTTAAACAGTACCCCAGTACCCTATTAAACTTA TAAAGAGTCAATATAACAACTGGACACGGACACTTGAGTGTCCAGTTGCT TTATTGTTGTTAATTCATTTTTCTCTCTTTGTATTTTACACGtccttttt tttacaagaacatccaaaaaattttgaagccttcttaactttttttagtt ttaagcctgaaaacgttcttaatatgttcttattttcaccattttttgag catctTTGTCCATTTACCCAAGAAATTGGGTATTGGAGTCgtcaaagtct taaaatgttctcaacttattcttaactttttggccaccgaagccttacgt tcttatataatttgttcttataaaaaacgtgtagtattgTTTAACAAAGA TATCATACTTTTGCttcattcttcatttttctttcatttacaGCTACTCC CGATGCGAACGATGAGTCTTCGAAAGGGGAGCGTCCAAAAACCATCACTT TCCGTACAGACAGTATCGAAAGTCCACCTTATTCACCTCTTGAGCCGAAA AGTCTCAACCTGAACGCGTTACAAAATATGGACTTGACGCGACCGGATTT GAAAGTAACCACACCAAAAGGTTACACACCAACCTTGACCACTCGCCCTG TCGTTGCCACAATCTCAAGTCTTGTTAACAGCACAGTGAAATCGCCTTCG CCTGCCGAACGAAAACGTACTCCCACTCCAACCCATTCAAAATCAACGAA AAAGGAGAAGAAAGAATCGAAGAAAACTGAATCTCCTCAATCCTTACTCT CTCCGCCAACTAGTACCAAAAGTAAAAGCCCTTCTCCTAAGCTATCCAAG AAATCGAAACCAGCTCCTCCATCGCCCGCCGCGCTTGCTGCaaaagagaa ggaacgtgaacagaaagaaaaggagaagaaggagaaagaacaaagagata gagaaaggcgggaaaaggagaaacgagaaaaagagcagagagatcgtgaa agacgagaacaaaaagagcgcgaaaaacaggaaagagaaagagaaaaaca agagttgaaagaacaaaaggaacgcgaaaagcaagaacgagaacgcgaaa aacaagaacaaaaagagcgcgaaaaaaaagaaagggaGCGTGAGAAAGAG CGACAGAAACAAAGAGAACTTGAATTGAAAAAGGAGAAGGAAATACAAGA GGAGGAAGAGAGGCTGGCGCAATTCGAAAGAGAACGTGAACAATCCGACC CTTTCGATGATGACCCGCCCTCTTCGCCTAATCGCACTTATCTTTTACAC GCCCCACGGGAAGATTCACCCACTTCCACCCTCTTCAGTCCGCCTCGCGT TCGAATAGCATCATATCAATCGGACaaaaagaaacctaaggacaaagaga agagagagaaaaaagactctagtaaagaagacaagaaatccaaacacaag aaaaaatctTCTACGCTCAGTAGTCCAGCTTCGTCCATAGGCTCACTAAA ATCTCCGCCTTCCGCCAAATCTGATTTATTATCTCCGCCCAAGCTTTCAC AACCCATAATAAAACATGAGAAATCTTCTAATAAAACTGTTATGTTCCCA CCAGATAGTTCACCTGATATTACAGACTCTCCCGCAAAGCACACTTTCGC GTCGCCTGAGGAACGGAAATCTATCAAACAGGAAGAGGATGAAAGTCCGT TGAAAATAAGCCCGATCTCTTTAAGTAAACACGTGAAGAAAGAAGCGAAA ACAGACGTTTCTGAGAATGAAATCGACGTCACCTCCTTTTCACAAGGAGA AGAAGCAGTGCCTAGTTATAGTGAATCCTTTCAACCAAATATGTTCTTCC CAACCAAATTCaaagacgaaaagaagaaaaagaagaaaaagaaatctgag aaagatcgagacgaaaaaatgagaaagGTTTGTGTCCCACTGATCTATTA GACGGGGTTTTCTTATCCTTCTTCGGGGAAAAAAGCTTCCTGCAAAGTGA ATTTGTTTAATTCTTCCTGAGATGCGTGAAATTATTGTCGGCATCGTTTT CAATTTTATTAGGTTCACAAAAAGGTTTCTCTCTTTAAGGTGAATTTTCT TGagttctaaaaattttgaaagaaataatcTTTTACCATTgggaagaaga aagataaacttaaattttgatggatcatttattaaattcgactcattaga tcaaaagttatgctccaTCGAATAAAAAGTTGCTtccagaaagtgctcga aatcgTTGATTAAACAAATTAAACAGAATCATGATAACATAATacattag tatatttttgagtcattaaaaatgataattagctgtcaaAATAACCTTTT GCTATATAAAGGAGAGtcgaatttcaataaaaaaagaaaagtaaaaaaaa gttgagattTTTCAGATACACTCATTATTTTAACTCAACTCAACTCAACT CATCGGAAAATGCAGCAAAATCTAGTAAGATTCatgaaaatacatcaaat atgggtttcgaggtaaaTCCAGCCTTACATTGACCCAGTCTAGAAGCCAA AATCTGAGTAAAAGTTCGGTAAAAGCatattaaaatgattttggtgACGA TTTCAGACCCTTTCGAGGCTTCAGTTTCAAAATCTATGGATTTAATTACT AAGAATTGCTCTTAATTATGTGAAGGATCTTGCatttgccaattttaaaa taagattttaataGGTCTATTTTCAACGATTTCGAGCACtgtctgaaagt aactttttattcaattgagcataacttttgatctaatgagtCCGATATCA GTTTTGATACAAGCGTGAAAACGTTCAAAAATGCTAATTAGGTATGATgt tgaaataataattttttttaacattaatttttcGAATCTCGAGAAGAGTG AATTCAGGTGAATTGGGAGTGTATTTTTGAGCGAAAATTTACTAAATAAC TTGACCAAATGTAAGAAAAcgaaataccttaagggaagaaattttcgcgg aaacaaaatttcgcggttttcgcggattttgcctaaaaccgtgaaattaa gttcccgcgaaattttacaaaatcTTCAATCCGCGAAATTAAATTCCCGC GAAATTTAATTTATTTCACGCATTCCCCAAAATTCGTACTATTTCAAGCC Taaaaacaggttttttgcttatttaataacgcttttggccaaaaatatcc tgcaaccgggaaattaaatttccgcgaatttttcgaaaatcgatgaaccg cgaaattaaattcccgcgaaaaaaaataatttgaccaaccgcgaaattaa attcccgcgaaaatttcttcccttaaggtatccaATCCCCTCTACACGCA CAATCTCATCTTACGTTTAAACGCGTTAACGTCAATAATTCCAATTTGTT TAGCATGTAGACCGGAGTCGTTTATAATGCATGTAATACAGTAGTATAGG CATTATGTGATAATACGATTACCGTTACGGGATTTAGTTTGTATAAAATT GTCCCCTCCATTCTCCATTGGGCTTTCCCAGAAAAAAAATTTACCCCCAC TGTTGAGGATATTGATTTTTCGAAGTATCGAACCCCCTGGATATCCCACT TTATTAGTAAAGACCCCTGGATATCCACTCTTAAAAATATGCTCAACCCC CTGGATATCCTCTCTTATAAAGATGATTACCCCTGGATATCGTATTTTTT TACTTAAAAAGACACTTTACCCCCTGGATATCCGCTCCCTTGTAGAAATT TAATCCCCTGGATATCCACTTTTGAACGAAAATCGTTAACCCCCTGGATA TCCGATATCCTCAACAgggggggcacggactatttctggaaaagcccatt actttttgctttatttctactatgtctgatttagtcgtctagcttgatAG ACTATTTAGCATACTTTGGACCACAACTTTCAATAATCgttttttcttcc atttgttagaaagaagacagagagaagaagaagGATCGTAAACGAAAACT GGAAGAATCTCCAACGCCTTCATCATCCTCTACCTCCACAATGATTCCAA AACTCACTTTGAAAATGGGAAGTGAAAAGATCAGTGACGACCCTCCACCT GCAAAAATGTAAGCTGTTAATGTGTTCTGCTTTTACTCTTTACTGACAAT AATTGGCTACAAGCTCATTAGATTTTTGCTCTGACATCTTTGTTTGAAAA GTTTTACTACAAGCTATTTTCCAGAGATAGCATGTCTATGTTCGAAGTTT GCGATAAATGTCCAATCATTAAGTAAAGGGACATAAAAGTAGTAAAATGT AAACATTGCGCGAACCACGTGTCATTAAAGAGAAAAATTAAAATCACGTG TCCAAAACGAACTTGTAAAACAATTGAAACAATCAAAATCAGCCATAGtt gttttgattttgtatcccgctgcatacggtttgtttacaaatttcgtttg tacttttatgtccctttaacttTAAAAGatctaaaaacaaaagataTTTG ACAACTAAGCAACATTGCCtggtgaaaaacatttttcggaccatcaaatc tgagtttgactcgaaaagaaatttgaatctAGGAGATCATAAATAAACAA CGTTCGTTGTAAATCTTTTCTATCAGACCAAAGAAGCGAGCGGGATCGCC GCCACTCAGCTTGAAAACAGTGCTGAAGCCTTCCACGTCACAAATcgtta aaaagaagaaagagaagaagaaagataaacacaaagaaaaatcacGTGAC TTTGATGACGAGGATGATAATGTATCTAATAGTGGTTTCTACGTCGAATC GCAAACCGATACCGCGGTAAGTGATAGCATATGGAGGCGCTTAAATATTA CAAGTCTctattaaagtctattccaTAAAATTGGTACACCGTACTTTGTT GGGCATTGCTCTTTCTTAAGGGAAAAATATACAATTAAAAGTTatacctc gttggaaagatagttTTAAGcggattgggctcttccagaaaaaatccgtt catggggggggtggaggatatattatttttttcatgaattatccctggac attttgatttttaaccccctggacacgggttatacccctggacaaacatc aaatcaaccccgtggacacaaaaaattacccctggacattggaatttacc ccctggacattgcaatttttggtattttttcaatacccctggacaattca tcctccaccccccatgaacagattttttctggaagagcccattgatGGAA TCTTGTAGGTAGATGTAGAAAGGTTTTAAATGGATTCTCATTCTAttctc atcttcagcatagttACGATAACAAGATTTATTACTGTCCTGGTTGTGGC AAACCCGATGATGGAAGTCCAATGATTGGGTGTGACAAATGCGATGATTG GTACCACTGGTAAGACAccttctaaaaatgaattcttaAAATACACAAAT TTCCTATCAGCAGATTCGTGTGAAGAAGTCACGAAAAAACATCGAATAAA actctgattggctgagacatgccaagattacctcatacttcggacatttg aaaaaaagtatgTTTATGAATACAATACCTTATcggaatttttctaaaac agtgatgcattgtgggattgtttcgggagtattacaatggAATTCCCTCG aagaattcctaagagatttctattctAATACCTCCAAAAACAATCCcaaa atgcatcgcttttttagaaaaatcaaaaactccgataggATCAATTTata gccaatcagagctttgatcgacgttttttcgtgacttttacATGATTCTG CTTATAGAAAATTCGTCTGTTAAGATTTAAAGAACCTGTCTGCGGTAAAG TCAGGCTGGTCTAAGGTTTTTAGCGAACTGGAAAAGAGGGCAGTTGAAAT ATTAGATCCGACCGAAATTTCGGTAGTACCTTGTTGTACCTAACGTGCTT ACTTTGATAGACCAGCCCCCCAGTGGTAAGTGGGATCACGATATCGcgca atttctttttcttcaattacgatcacgcaaatcatcaaaatacttgaata atcatgcatccctttgaaaaagtccaaatcacgcatcacggctcaaaaat cttttaaatcacGATCACATTTTGACttctgatcacgcaatcacgaaagt aaaattccaaatcacgtaatcacgttagaaaaaagtccctatcacgccat tgcgaaaaccgcttgggggcGGAGGCTCATAGAAGCCAACCTTCATGATT TTAAACcttatttaaaacaagctcAATGTAATAAAAAGGATACTGTTGCA GTTGGTCCCAGGTTGAAAATACAGTATACTCAGGAGTTCaacatagggtg aaaaatttgCTCGAGATAGAGAATATCTGAGATAAAGGAAGGGAAGAGTT CTAGCatgtggagtctctataactcgaatagaCAAAGAAGTCTTGTAGCC CCTTCAGTCAACATAACAAACCATGTGCGTTTCTTGCACGTGTTTGAGTT ATAGAAATTCCACTGTATTGTGaaaccatagtccgtataaaaaatcccgg tctggaagcctttttttCCATTGTGtcttacttgaaattttttgctcact ttttgatcatgtgattaaactttaaaccaatcccaagagaagGAAtcggt aacgtgatcaaaaactgagcaaatcgactTTCGTCCTTTGATAGTAACAA AAGGTTAAAACAAcaagcttccagaccagtgaCTATTGTACGTTAAACCT GTTTCATTTTTCAGGCCATGTGTAAATATTGTTGAAGAGCCAGCGGAAGA TGAGAAATGGTTTTGTCCGAACTGTCCGGGAGGtgttacaaagaaaaaga agaagaaaaagaaacgaGATGGCGATtga

Coding sequence (CDS) from alignment at sc0000248_pilon:56774..63852+

>XLOC_013100 ID=XLOC_013100|Name=XLOC_013100|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4188bp|location=Sequence derived from alignment at sc0000248_pilon:56774..63852+ (Clytia hemisphaerica_ch_hm2_pilon)
CATCTTTATAACATGAAGATTTACCTACCGCGTTTTGTCACTGATTTTCG
TAGAACATCTTTATAACATGAAGATTTACCTACCGCGTTTTGTCACTGAT
TTTCGTAGAACTACTCCCGATGCGAACGATGAGTCTTCGAAAGGGGAGCG
TCCAAAAACCATCACTTTCCGTACAGACAGTATCGAAAGTCCACCTTATT
CACCTCTTGAGCCGAAAAGTCTCAACCTGAACGCGTTACAAAATATGGAC
TTGACGCGACCGGATTTGAAAGTAACCACACCAAAAGGTTACACACCAAC
CTTGACCACTCGCCCTGTCGTTGCCACAATCTCAAGTCTTGTTAACAGCA
CAGTGAAATCGCCTTCGCCTGCCGAACGAAAACGTACTCCCACTCCAACC
CATTCAAAATCAACGAAAAAGGAGAAGAAAGAATCGAAGAAAACTGAATC
TCCTCAATCCTTACTCTCTCCGCCAACTAGTACCAAAAGTAAAAGCCCTT
CTCCTAAGCTATCCAAGAAATCGAAACCAGCTCCTCCATCGCCCGCCGCG
CTTGCTGCaaaagagaaggaacgtgaacagaaagaaaaggagaagaagga
gaaagaacaaagagatagagaaaggcgggaaaaggagaaacgagaaaaag
agcagagagatcgtgaaagacgagaacaaaaagagcgcgaaaaacaggaa
agagaaagagaaaaacaagagttgaaagaacaaaaggaacgcgaaaagca
agaacgagaacgcgaaaaacaagaacaaaaagagcgcgaaaaaaaagaaa
gggaGCGTGAGAAAGAGCGACAGAAACAAAGAGAACTTGAATTGAAAAAG
GAGAAGGAAATACAAGAGGAGGAAGAGAGGCTGGCGCAATTCGAAAGAGA
ACGTGAACAATCCGACCCTTTCGATGATGACCCGCCCTCTTCGCCTAATC
GCACTTATCTTTTACACGCCCCACGGGAAGATTCACCCACTTCCACCCTC
TTCAGTCCGCCTCGCGTTCGAATAGCATCATATCAATCGGACaaaaagaa
acctaaggacaaagagaagagagagaaaaaagactctagtaaagaagaca
agaaatccaaacacaagaaaaaatctTCTACGCTCAGTAGTCCAGCTTCG
TCCATAGGCTCACTAAAATCTCCGCCTTCCGCCAAATCTGATTTATTATC
TCCGCCCAAGCTTTCACAACCCATAATAAAACATGAGAAATCTTCTAATA
AAACTGTTATGTTCCCACCAGATAGTTCACCTGATATTACAGACTCTCCC
GCAAAGCACACTTTCGCGTCGCCTGAGGAACGGAAATCTATCAAACAGGA
AGAGGATGAAAGTCCGTTGAAAATAAGCCCGATCTCTTTAAGTAAACACG
TGAAGAAAGAAGCGAAAACAGACGTTTCTGAGAATGAAATCGACGTCACC
TCCTTTTCACAAGGAGAAGAAGCAGTGCCTAGTTATAGTGAATCCTTTCA
ACCAAATATGTTCTTCCCAACCAAATTCaaagacgaaaagaagaaaaaga
agaaaaagaaatctgagaaagatcgagacgaaaaaatgagaaagCTACTC
CCGATGCGAACGATGAGTCTTCGAAAGGGGAGCGTCCAAAAACCATCACT
TTCCGTACAGACAGTATCGAAAGTCCACCTTATTCACCTCTTGAGCCGAA
AAGTCTCAACCTGAACGCGTTACAAAATATGGACTTGACGCGACCGGATT
TGAAAGTAACCACACCAAAAGGTTACACACCAACCTTGACCACTCGCCCT
GTCGTTGCCACAATCTCAAGTCTTGTTAACAGCACAGTGAAATCGCCTTC
GCCTGCCGAACGAAAACGTACTCCCACTCCAACCCATTCAAAATCAACGA
AAAAGGAGAAGAAAGAATCGAAGAAAACTGAATCTCCTCAATCCTTACTC
TCTCCGCCAACTAGTACCAAAAGTAAAAGCCCTTCTCCTAAGCTATCCAA
GAAATCGAAACCAGCTCCTCCATCGCCCGCCGCGCTTGCTGCaaaagaga
aggaacgtgaacagaaagaaaaggagaagaaggagaaagaacaaagagat
agagaaaggcgggaaaaggagaaacgagaaaaagagcagagagatcgtga
aagacgagaacaaaaagagcgcgaaaaacaggaaagagaaagagaaaaac
aagagttgaaagaacaaaaggaacgcgaaaagcaagaacgagaacgcgaa
aaacaagaacaaaaagagcgcgaaaaaaaagaaagggaGCGTGAGAAAGA
GCGACAGAAACAAAGAGAACTTGAATTGAAAAAGGAGAAGGAAATACAAG
AGGAGGAAGAGAGGCTGGCGCAATTCGAAAGAGAACGTGAACAATCCGAC
CCTTTCGATGATGACCCGCCCTCTTCGCCTAATCGCACTTATCTTTTACA
CGCCCCACGGGAAGATTCACCCACTTCCACCCTCTTCAGTCCGCCTCGCG
TTCGAATAGCATCATATCAATCGGACaaaaagaaacctaaggacaaagag
aagagagagaaaaaagactctagtaaagaagacaagaaatccaaacacaa
gaaaaaatctTCTACGCTCAGTAGTCCAGCTTCGTCCATAGGCTCACTAA
AATCTCCGCCTTCCGCCAAATCTGATTTATTATCTCCGCCCAAGCTTTCA
CAACCCATAATAAAACATGAGAAATCTTCTAATAAAACTGTTATGTTCCC
ACCAGATAGTTCACCTGATATTACAGACTCTCCCGCAAAGCACACTTTCG
CGTCGCCTGAGGAACGGAAATCTATCAAACAGGAAGAGGATGAAAGTCCG
TTGAAAATAAGCCCGATCTCTTTAAGTAAACACGTGAAGAAAGAAGCGAA
AACAGACGTTTCTGAGAATGAAATCGACGTCACCTCCTTTTCACAAGGAG
AAGAAGCAGTGCCTAGTTATAGTGAATCCTTTCAACCAAATATGTTCTTC
CCAACCAAATTCaaagacgaaaagaagaaaaagaagaaaaagaaatctga
gaaagatcgagacgaaaaaatgagaaagaaagaagacagagagaagaaga
agGATCGTAAACGAAAACTGGAAGAATCTCCAACGCCTTCATCATCCTCT
ACCTCCACAATGATTCCAAAACTCACTTTGAAAATGGGAAGTGAAAAGAT
CAGTGACGACCCTCCACCTGCAAAAATaaagaagacagagagaagaagaa
gGATCGTAAACGAAAACTGGAAGAATCTCCAACGCCTTCATCATCCTCTA
CCTCCACAATGATTCCAAAACTCACTTTGAAAATGGGAAGTGAAAAGATC
AGTGACGACCCTCCACCTGCAAAAATACCAAAGAAGCGAGCGGGATCGCC
GCCACTCAGCTTGAAAACAGTGCTGAAGCCTTCCACGTCACAAATcgtta
aaaagaagaaagagaagaagaaagataaacacaaagaaaaatcacGTGAC
TTTGATGACGAGGATGATAATGTATCTAATAGTGGTTTCTACGTCGAATC
GCAAACCGATACCGCGACCAAAGAAGCGAGCGGGATCGCCGCCACTCAGC
TTGAAAACAGTGCTGAAGCCTTCCACGTCACAAATcgttaaaaagaagaa
agagaagaagaaagataaacacaaagaaaaatcacGTGACTTTGATGACG
AGGATGATAATGTATCTAATAGTGGTTTCTACGTCGAATCGCAAACCGAT
ACCGCGcatagttACGATAACAAGATTTATTACTGTCCTGGTTGTGGCAA
ACCCGATGATGGAAGTCCAATGATTGGGTGTGACAAATGCGATGATTGGT
ACCACTGcatagttACGATAACAAGATTTATTACTGTCCTGGTTGTGGCA
AACCCGATGATGGAAGTCCAATGATTGGGTGTGACAAATGCGATGATTGG
TACCACTGGCCATGTGTAAATATTGTTGAAGAGCCAGCGGAAGATGAGAA
ATGGTTTTGTCCGAACTGTCCGGGAGGtgttacaaagaaaaagaagaaga
aaaagaaacgaGATGGCGATtgaGCCATGTGTAAATATTGTTGAAGAGCC
AGCGGAAGATGAGAAATGGTTTTGTCCGAACTGTCCGGGAGGtgttacaa
agaaaaagaagaagaaaaagaaacgaGATGGCGATtga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_013100XLOC_013100-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248_pilongenomesc0000248_pilon:56774..63852 +
Properties
Property NameValue
Aaloc1981-2094:6966
Aaloc1879-1977:5509
Aaloc1690-1878:4828
Aaloc1540-1686:4160
Aaloc58-1539:646
Aaloc1-54:1