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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000168_pilon:234144..240409+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_013063 ID=XLOC_013063|Name=XLOC_013063|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6266bp|location=Sequence derived from alignment at sc0000168_pilon:234144..240409+ (Clytia hemisphaerica_ch_hm2_pilon)
gtaggaTTTATCACTTTAAGCAGACGAATGTTATCAAGGAAGAGACTTCT
GAAAACATTAAAGGTACAATTGTCTTCAattattatcaataaatttttct
tAGAGAGCAGTTTCTTAGGCTGAAGTATAAACTTTGATGTGCCGGTCATC
ATGTAAATGCAGATGCCTAATGAAGTTTTGAAAATGCAAGCCTTCCGGTG
AATGGCAGGCTATACATTTGTCGTATTTTGCTCCTTTTTTAgctattttg
aagaattttaggggttattttggcaaaaataaaaaatgaaaaaagaaaca
attttggcgagaacttggTTTCTAATACGCTGATTCGTTCAGATATGAAT
TTCTCTCTTTGAATAGCCGCCTTGACTTAATTTTTCGAAAAATCCAGGTC
TTAATGACCTCAAACGAAGATTATTTTATTGAATTAATGAATTAAGGTGT
TTACCATCAACATGGCTACATGGCTCTTAGCCATTTCTGAAATCTGAGGC
TGGTATTGCTCTTAATTTGTTTACTTTTGTAGTTTTGGCCATGGTTGGCC
CTCGTGTTTTTATTTAATTGTTCTCATAGAAAGTGTGTGTATGATGTATG
TGATTTCACTTTTAGGAGAGAAAAGCACGAGTGGATGCTTTGAAAAACAT
GTTCTCCGAGCaagtcAAGGCGGCTATTCAAAGAGAGAAATTCATATCTG
AACGAATCAGCGAATTAAAAACCATTAAAGAGAAGACAAAACTTCAAGCT
GACCAAATCAAGACTCAGCAACAAGAGATCTCGGCGTTAAATCAAGAGAT
TGTGATGCAGGAACAGCAAATGGATGTCGTAAAAGATGTTCTATTTAAAC
AGGAAAAGGTAAGTTCTCCAGGATAACTCAAAACGTTGTTACTTCCGACA
TAGTCACAagaatagcgagtttatgtatttgcacttttaagGACGGTACT
GAAGCAATTTGGAAAAACTCGCatttctgacccgcaaaatcgaggacggt
aaaagtgctgatttaccgtcgtcctcagttggtcatgatctagccaaatt
agaaccttaccgtcttcgtcgctgaaaaacacacatacataaacttggtA
ATAAAATTGACATTGCTGCCACGGCCCTCaatagacattttcataaatta
cgtcatgagcAACATTaacctcattttcaaaatattgcttcaatagacct
tatcggaatttatgatttttctaaaaaagtgatgcattgtgggattgttt
cgagtgtattacaatagaaatctcttaggaattcctcgagggaattctat
tgtaatacactcgaaacaatctcacaatgcatcgattttttattaaaatc
aaaaactccgataaggtctattatcagaggagttcataagaaCTCTACTC
TATTTTAAAAGTAACATATGAAGTCTCGAGGTATTTGGTTATCGTTTCAA
GACGAGGTATTCGTTGCACTCagaataatttatgaaaaggccaaTTAAAC
CTTAGGTCTATTACATTTATATCCTCCTTGATCTGAGTTGCAAGAAATAC
TAGGTAAAACTGTGGTTGTAATCCCTATACTGACTGCATTCCCGTGAAAT
ATTAATCGATGTTAAAAAGTATTGTCCCGAGCTTACGAGGGCAATACGTT
TGACAGAAGTCAATATTTTACGGTATTGCCCGACCCAGGTTATAATGTAC
GgtatatgattaaaaaaaaaccacgTTAGAATAAAGTAGGAATTTGAAAA
gtcatttcatttaaacaagTCTTTTTCGCGAGTCTGCTTAtacaatttca
aaagttttgcttTCTATATTACCACTatactagactagtaaactagtcca
aataaaaagaatcgaaggggtgaagttgcgtgtattttctgaatttcaac
gactagaagctactttcttcaaaaaacgttgtttaattttacaacttttt
ttaggtttttgagaatccatccaacttttttgactaaatgatatttcata
gtaacattgaacatgggaatatataaataaatgagcatttctaaaaacgc
aataaacagaaagaaaaataaatgcaatcccgcacaggtcagacatacag
aaatctgtatgtctctccttacgattttaggtgaagaaaaaaaggcgttg
gaagtagcttctagtcggttatttttcttttctctcacgcgtgttgaata
ttttaattagtgtttacattatttgattgacagttttattataaggttat
aagtaataaccgactagtttactagtctaccaCTATACCTGACTATACTA
ACaaaagtccattcgcttttaAGAGTGTACTCTTTTCGTAttgattgaaa
acagattacaatatagtcatttttcatgtctcgattattcaattccgaat
aaaagacattcagggaaaaaaaagagaaacacctgggtaatctagtaaaa
accgaaagtaaatgatagacaaagtaatgagccaaggcaaaacgagatta
gcgtaccactgtgaaagaaaccgcctccggcggtcgaaaaAGTGTAAACT
TAAAGCGCGTGTACTTTAGTTTTATTCTTTACTCGGAGAGAATGACGATT
GTTTTTAGGTATTAAATGCTCAAGATGAATTCATTTTACAAGAGGAACAC
AGAAACCAACAATGTGAAGAAATTTTGAAACTACGTGAAGAACAAATCCA
AATTTTTCGTCAAGAATTGAAAAGGAAAGAAGAATTATTAACGAAAGTCA
ATAATGATTCAATCGTACGAAGAGGCTTGGTATGTTCTTAAATTAAGAAT
ATTATACGTCCACTTTCTTATTTCTTAAATGGACTTTTCTGAAATCAAGG
CTCTGTTTGCTCCTAATTTATTCTTAGGTTTCAgcctatttttttatttt
aactgtacgagtttatgtatttgcacttttgatgacggtaaagtgactga
agcgatttggaaaaacctgcagtgttgacccgcaaaatcaagGACTGTAA
AAGAGCTGTCGTCCTTAGTCAGGCAGGCTGTAGAAAAATTAGAagcttac
cgtctccgtcgcagaaagacacacacataaactcggtaatgtcaAAGAAA
TGAGAGCTTTGATTTCACTGACAGCAGAAAGCTTCCCTGAAAATTTACCT
TCCTACCACCCTGCAGAAAAGTTTCAGGGctaccagaggaatgtaaagag
atggaaaacaatggaaaaacggctcgtcatataccaggtctcttgccctt
aagggagtttatgtcgagtaaataggtttcttttgttgtcgctataaaaa
atcagcatgattagcgtgttgtgacaaaattcttttgtttcaagccttat
tatgcgcaaacttttagggcttatattttgggtacacctctcctatacga
aaaggtacatatatcttcttgctcagaatttcctagcgattctactgata
taaccgcatcatgaccgcactcatatatggaaagctagagctcgagaaaa
ttataacttcatcttgattttactcacctgtgacagttttacaagaacca
ttttaatatcattgcgttaagaatttcttttggtatacattggtaaaaat
attgctccttattcttaaaaattgaactagtaatcggcaaaaaaaggaaa
aacaaattttcatttttatcgtcaaatcatgtggaaaccgtccgatttgt
atggcgagccgtcttttctggactttcatttaatgacctaatcaacgttt
ttacattagaattttcaatagaagcgATCGTTGAGCtctgagtaatcaga
aaagctgtttttccatctctttacattcctctggggTTACCTAGACTACA
CAATTTATTTattaactagccggtacccggcgtcgcacgccggttaagct
gtagctgaacgcacttaAAGTCCTTTgcatgttgaagctggcttaaaaaa
gcgatcaaataaaaaaaaaaatctctacaacgtttaactctaaccttccc
tgggtgtcttatcttttaaccatatttggatcgtcTACTGTcccccccGT
GACATAAtattttgtttaagtcaaaaattatcagaaagagcatcgtttac
tgtaccagtgtcgtttgaaacgactctgcaggtagttatttttctctcgc
ttcgctcgcgttaaatatgccgtccagtttaaatgacaaagtgggaaggt
caaaaagaatagtgcaactctttttttttatcagatcgagaaaaaaaata
agacaattctaagttgcTtttttaaacccttttcgaatttaaacataaaa
aatgacgtacactttttaacagtaacgacgacttatttttataagaagaa
agaagtgaactaatttttttatgctttatatcgccctttgaatgttgttg
tccacaaacttttagatttttatgttttgatttgcttttgaaatattctt
ttttatgaaatgaaattgatttgttttgaaaagaattcgaatgtcattaa
taaatacgatcgttaaatacattcgtaaacatttaaaacaaaagaagaga
gaaaaaggcaagtctgggcagaatttaaaattactaaatgtagatgggcc
ttaaatttcaaaacaaaggctgaataaagtctaaaccaagctctatccga
tcttttgtaaatggcgcgaatccaatagaacaaatttgtggagcaagaga
ttaaaagtcataattttaaaacacaaacaaagcgaaaacgaaagtggtga
cacacagacacacaaagcaccgctattaatatatagacaaTACTCCACAA
TATGGTCTGCGTGGGCTGCAATAAATTATTGTTTCCAGGCTTGTTTGAAA
GCCTAGTCTGAATTTCCGACTTCTGTTGGATCGAAGGTaatttttctgcg
acggagacggttagcttaTAATTGTGTTAGATCCTGACTCACTGAGGATG
ACGATGAATCAACACTTTAAGCCGTCCTCGACTTGGCCGGTCATAACAGT
GGATTGTAtcaaatcgtttcagtcactctgccgtcctcaaaagtgaaaaa
aaaataaacccgCTGTTATAGAGCAAACACTTGTTAGAAAATACCATTAG
CCTCCATAaaggggggggtttgtaggggttcgaaataccgttttcccgtc
aaaatttttgctgaatcccagaatcccgaaaattgacaaaaataataaca
ccgtcacaccggtttgtactgggtcaaataccggcataatgacaaaaaat
aaggccaaataccgtcaccgtctgatttcaaaataccgttttcccgtctt
ttatTTCgtaaaatcccgtaataccgtactaaaaaagggccaatcccgtc
acaccgtaaaagtacaacccccccccccataaacTCCAAGTATTTGGCAG
GAGCACTTAATACAGACTTAACATGCAGAAATGCACTATAAGTGAAGTGA
CCCTAATAATCGAATCATAGACGACTTTAACCATTGACTTTTAAACCCAA
AGGACTAGACAAAAGACTCCTGGaggggaaatgaagccacttatttcccg
tCCTAAACGCGTGACCCGCGTTGTTTTCACAggaacgccagattgaaagt
aaaacatatcatcagatttcgaaaaatatgctgcatgaaaacaaagaaaa
tgctaGATTTGATCCGTCTTTCtaaatgcggcgcaaatcttaagacttca
ctttttcttacttAAGAAAGTTTTAAGATTCATATCCAGCCCCTTCGGgt
ctttaaactcaatgaattTGACTaagattttattgctttttagGATTCGA
ATGGTGACCTTGTATGCGAATTAACAGAGAAAATATTGGTGAGTAAATCT
CAGCCTTCTTCTTGACCGTCGTTGGGTTTGCAGTGCAGATCTTCccattg
aattttaattagggggccatccatatagtacgtacgcagtgaaggaggga
gaagggggtttagcaaaagcgtatgtttattgtttgaatgactttatttc
tattgttctctgcgtacaagggggtagggggtgtcaaatatttggaaaat
tattgtgtacgtactatatggatgaccCCTAGGGGACGAAAACAGacaat
tgtagggtattttttcccaCCCAAGACCAAATTTTAGCCAAAGTCTCCAG
TCCaggcgggtctgtgacacaggggtgatTTCCACTTATCTAGaactttc
tcttttttcattcaGAATATTTGTTCAGCCCAACCacaacaaaatcttca
aaagaggAATTTATAA Coding sequence (CDS) from alignment at sc0000168_pilon:234144..240409+ >XLOC_013063 ID=XLOC_013063|Name=XLOC_013063|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1146bp|location=Sequence derived from alignment at sc0000168_pilon:234144..240409+ (Clytia hemisphaerica_ch_hm2_pilon)
gtaggaTTTATCACTTTAAGCAGACGAATGTTATCAAGGAAGAGACTTCT
GAAAACATTAAAGgtaggaTTTATCACTTTAAGCAGACGAATGTTATCAA
GGAAGAGACTTCTGAAAACATTAAAGGAGAGAAAAGCACGAGTGGATGCT
TTGAAAAACATGTTCTCCGAGCaagtcAAGGCGGCTATTCAAAGAGAGAA
ATTCATATCTGAACGAATCAGCGAATTAAAAACCATTAAAGAGAAGACAA
AACTTCAAGCTGACCAAATCAAGACTCAGCAACAAGAGATCTCGGCGTTA
AATCAAGAGATTGTGATGCAGGAACAGCAAATGGATGTCGTAAAAGATGT
TCTATTTAAACAGGAAAAGGAGAGAAAAGCACGAGTGGATGCTTTGAAAA
ACATGTTCTCCGAGCaagtcAAGGCGGCTATTCAAAGAGAGAAATTCATA
TCTGAACGAATCAGCGAATTAAAAACCATTAAAGAGAAGACAAAACTTCA
AGCTGACCAAATCAAGACTCAGCAACAAGAGATCTCGGCGTTAAATCAAG
AGATTGTGATGCAGGAACAGCAAATGGATGTCGTAAAAGATGTTCTATTT
AAACAGGAAAAGGTATTAAATGCTCAAGATGAATTCATTTTACAAGAGGA
ACACAGAAACCAACAATGTGAAGAAATTTTGAAACTACGTGAAGAACAAA
TCCAAATTTTTCGTCAAGAATTGAAAAGGAAAGAAGAATTATTAACGAAA
GTCAATAATGATTCAATCGTACGAAGAGGCTTGGTATTAAATGCTCAAGA
TGAATTCATTTTACAAGAGGAACACAGAAACCAACAATGTGAAGAAATTT
TGAAACTACGTGAAGAACAAATCCAAATTTTTCGTCAAGAATTGAAAAGG
AAAGAAGAATTATTAACGAAAGTCAATAATGATTCAATCGTACGAAGAGG
CTTGGATTCGAATGGTGACCTTGTATGCGAATTAACAGAGAAAATATTGG
ATTCGAATGGTGACCTTGTATGCGAATTAACAGAGAAAATATTGAATATT
TGTTCAGCCCAACCacaacaaaatcttcaaaagaggAATTTATAAAATAT
TTGTTCAGCCCAACCacaacaaaatcttcaaaagaggAATTTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000168_pilon | genome | sc0000168_pilon:234144..240409 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 523-573:6216 |
| Aaloc | 478-522:5794 |
| Aaloc | 307-477:2609 |
| Aaloc | 64-306:616 |
| Aaloc | 1-63:1 |
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