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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000049_pilon:954899..959254+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_012828 ID=XLOC_012828|Name=XLOC_012828|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4356bp|location=Sequence derived from alignment at sc0000049_pilon:954899..959254+ (Clytia hemisphaerica_ch_hm2_pilon)
atgcTTGTTACTCTTCGAAGGGGTAAAACTTCAAAGCTTACGCACAATTT
ACCAAAACGTCCTCAACAAAGATTTAAAGCAACGACAACGCTggatattc
aaaacaaaagcgTAAATAACGAGGAagaaatttggaaagaaaattggaaa
agacGGTGTGAGCTTGCAACAGCTTACAGAGGTTTAGCAAAGTGAGTATC
TTTTTCATTCTTATTTTATATGTTATTGCTTTCCtctacagaaaaaaaaa
ttatttccaaaagaaattctttcggacttcgaattcttttttcagttttc
aaaaggcctttaatttttgcttgtcttttttaatttcttctgaTTCTTGG
TAACGTTGACATACCGAGGTTAGaaaaaaaTCCTTTAATTACAGTTTCCC
ACAGAAGGAGTCAAAGCGTTTCAAACCAACAATTTCTCCCCTAGTTAAAC
TCACataaagaatttcttttcatcACTCGCAGGTACAACATGCACGAAGG
AGTGTGCAACCATCTCTCAGTCAAAACACCCTCACTACATACAAAAGGAG
AACGTCAATTGATGTTAACGGCGCCGTACGGCATTTATTGGACGGAGGTT
ACACCTAGACATCTTGTTGGTGTGTATTTCAACTGGTTTCAGTTTCGTTT
CAATAGTGATTGGCCTATTCCAGAAAAGTCTGTATCCCTTATGTTGAGGA
GAtgcagggtcggatacaggaggtaggctatcttattcatggagagtaat
tagtttccatataaggtaatacgataaaaaagtgcactctcctccattgg
ttatagcctccctctgtatccgagcctgggTGACGTCATCTAGGGCGGTC
TGgcaaataaaaaatccaggatAGTCTGTCTggtttttttgtataaaaac
tcaGGGTGGTTAGTAAAATGAGGTGGAAAATCCAATGCCGTCAGTAAAAC
GATTCAAGAGTTGTccaaaaaacgagaaaaaaaccAAGTACCTTATCGGA
GAAAAAATGTCGGGTGACGTAAactttgagggggtgacgaaatttttccc
cgatatttcttcacccgaccaaaacttttgcccgatttttttatccccaa
ccaaaacttttacccgattttttaaaccctaaccaaacttaaaatccaaa
ttttttagacctttattaaccgaaattagtgctttaaacgccgaatgaaa
agatcttttttcgagctagtgaaggaaaccatttcattagGACAATtaag
ttgggtgaaagtgactaaattgtaaatttcgtcggagaaaagtgacgaat
ctgAAATTTTGGTCgagggaaagtgacgaaaatgcctctaggtgacggaa
tttttccccaacaaaaaaaatgtcgaagttttatttagtcggggcttttt
tttgtcggggaaaaatttcgtgaaaatatTAATCATTGCAGAGTTTCTCG
CTAGGTATTTTATTAACTTCTTCTTTGGTTTTACTATCTAATGATATTCC
ACTTTTGATCATATTGTCAACGATTACCTAACCATTATTTTAGGTGTTGA
TTTAGAAACAGGTGAATTGGTGGAAGGAAAGGAGCCACCGGAAATCACGG
CACAGAGTATTCACATGGGAATATATGCGCATGCGCGGAAGAAAGAAATC
AATTGCATCATGCACACGCATGCCATGTATACTTCTATCCTTGGTACTCT
ACAGGTAGAAACGATTTCTTGATATGTTTAGATATTTCCCGATTGGGCCa
aaagaccttttcataaattacattaCGAACattacttgcctcgttttgaa
atgatTGCCATGGTGACTAACTCCCAGTGGAttatattaaaactacttcc
tattcataagaaaatcatttaatgCCTCAAGAAGCATAATCactatggta
attgtttgaatacgaggcaagtgatgttcgtgacgtaatttatgaaaagg
tctattagtcGAGGAACTGAAAGAAGTTTATACAGATGAATATGCAAAAG
AGTACTGTGCATGAGGCTCTTCAGAAACCGTAGAGAACATTCAGTCACGG
CCAGCAAAAAGAGAATAGCCCGGGTTCcactttttgatagactggatggc
gctgatgAGtttttttGCCTTTGCGTGAGTTGGTAGCAAATCCGGAGCGC
TAGATCTAGTCCCTTTCTGGaggataatttttgaaaacgaaagtgaaaaa
attcaagatggcgttatcctctagtctacttcagtggagcaaagttcagt
cagaagtagccTTTAGTCTAAGAAGAGCACGAAGAAAAGGATCGAAGGGA
AGTAGAGTAacccagggagaaagagtggcgccctcctctACATTCGGTGG
ATAGTAATCAAAAGAGGAGCCTCCGACTGTGGTCACACACATAACGTGCA
ATCTACCCCTTCCATAGGATCCAGGCATCCAAATGATCCACCAAACTTCG
ACACGTTTCCTCAACAATGTCTCTTACGATCAAGACTTCCCTTTAATGGC
CAATCAAACGTCCAACCAGGTAACATAaccctcttttttatttttcattt
cttagaaatttcatttttttactttaagaGTCCGAAATCGACTAGCTAGT
CTGACTTTGTTACGTTGGTTGATATGGACCAGCCTTCAATTCACTTCAAT
CGCCCTTGCACTTGAACAACAGCCTCATCAGACCTGATACACAACGCATT
TATGGTTTGCTTAAATCTTTCTATGTCACCAACACTTCGAACAAACAATT
GAGACAGGGGACCAGGGGGTACTAGGTTCCGAGATGTCTGAGTATGTCTG
AGtcgaccccgattttagcattgtccaaaatcacggtatattgagtataa
caataaaatttatctgtgatacaagccgttttgggggaccgttattctag
tcttttactctaactgctctcctagctcattttgtttttgttttttattt
ctgttagtatttatcctctgtagtaagttttttttttttccatttatcaa
tttatttattaatttattgttagcttagtttgggttccttcctcctggcg
gtatgatctggtggtccttttgcgggaggttaggaacctttagttttgta
ctatttgttcgtgttacatacaatatagataaaaaaaataaaaataaaaa
ataaaaaataaaaaaaaaatgtctgagTCAGAAATTGGCGTTTTAggaac
ccttagagagactcatttctcaaaatttctatcgattttcactcgatttt
tgtccaaatatcggaaaatcacgaccctatgagagaggaaattttgaatt
tcgtgaATTTTGAACTCTTACTTAATTACTCAActttctttttaatggtt
tttgtacccctttgaaaGACTTTCGAGAGTGTGAAAAAggacatacccgg
cacccattttacctaagtaccccccccccccccccccgggacaaaGGAGC
ATGAGTAAAAAGATAGCGCTTTCTATGAAAgctattttccaaatttcatc
AAACGGATTTCATGAAATCAAGATATCTATATGTATGAGGTAGACTTTTA
TACGCGCGAAGCCGGCGTTCACGTAGCCAGTTTAAAAGTTATACGCAAAC
TAGTGAAAAACGCAGGAAATTTTTGTGTCTTAAAATACTTGAACCTATGg
cattctttttatttattttttcaggaagGTGAGCGACTTGGTCGTGTGTT
GGGAAATAAAGAAGTCTTAATGATGGGTCATCACGGCTTAGCAACCGTTG
GCAAGTCGGTCGCCATGGCATTTGATCTGCATTATTATTTTGAGAAAGCT
GCCGAAATACAAGTGAAAGCTTTACAAACTGGACAACCATTGAAGTAAGT
TCGGGGAAAGGGTGGGGTtcttaggcaaaatggatgtTGTACATTCGCGT
ACTTTCAATTTTCCTTGTTTATCtagattaaaggttttgtttttatataa
gtgtttccgtttcatatctgacacatattttatatcaggacagtgtcttg
ctattgttatattattctgatataagcaaaaaatgtttttcttttcctct
ttctgaccgcaatcttgctccacatctgcgtgtcaatccaatgtgaaaaa
gcttgtgaagtaaaattgacgagtaagcaaactatatcactcttatttaa
aaacaaaacctttaagagtaACTACTTTTTAGTGAGGCCCTTTATGTTGT
AAATTTCCACACGCTTTTCCTCATAGATTGTTATCAACAGAAATTGCAAT
AGATACGCATGCGCAGATGGTCGATTGTCAAGAATTCACAGCACATGCcc
attttgatgctctccaaaAAACTCTTGAAAGAGAATATCCTAGCTTCCTA
GCTTGA Coding sequence (CDS) from alignment at sc0000049_pilon:954899..959254+ >XLOC_012828 ID=XLOC_012828|Name=XLOC_012828|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0000049_pilon:954899..959254+ (Clytia hemisphaerica_ch_hm2_pilon)
atgcTTGTTACTCTTCGAAGGGGTAAAACTTCAAAGCTTACGCACAATTT
ACCAAAACGTCCTCAACAAAGATTTAAAGCAACGACAACGCTggatattc
aaaacaaaagcgTAAATAACGAGGAagaaatttggaaagaaaattggaaa
agacGGTGTGAGCTTGCAACAGCTTACAGAGGTTTAGCAAAatgcTTGTT
ACTCTTCGAAGGGGTAAAACTTCAAAGCTTACGCACAATTTACCAAAACG
TCCTCAACAAAGATTTAAAGCAACGACAACGCTggatattcaaaacaaaa
gcgTAAATAACGAGGAagaaatttggaaagaaaattggaaaagacGGTGT
GAGCTTGCAACAGCTTACAGAGGTTTAGCAAAGTACAACATGCACGAAGG
AGTGTGCAACCATCTCTCAGTCAAAACACCCTCACTACATACAAAAGGAG
AACGTCAATTGATGTTAACGGCGCCGTACGGCATTTATTGGACGGAGGTT
ACACCTAGACATCTTGTTGGTACAACATGCACGAAGGAGTGTGCAACCAT
CTCTCAGTCAAAACACCCTCACTACATACAAAAGGAGAACGTCAATTGAT
GTTAACGGCGCCGTACGGCATTTATTGGACGGAGGTTACACCTAGACATC
TTGTTGGTGTTGATTTAGAAACAGGTGAATTGGTGGAAGGAAAGGAGCCA
CCGGAAATCACGGCACAGAGTATTCACATGGGAATATATGCGCATGCGCG
GAAGAAAGAAATCAATTGCATCATGCACACGCATGCCATGTATACTTCTA
TCCTTGGTACTCTACAGGTGTTGATTTAGAAACAGGTGAATTGGTGGAAG
GAAAGGAGCCACCGGAAATCACGGCACAGAGTATTCACATGGGAATATAT
GCGCATGCGCGGAAGAAAGAAATCAATTGCATCATGCACACGCATGCCAT
GTATACTTCTATCCTTGGTACTCTACAGGATCCAGGCATCCAAATGATCC
ACCAAACTTCGACACGTTTCCTCAACAATGTCTCTTACGATCAAGACTTC
CCTTTAATGGCCAATCAAACGTCCAACCAGGATCCAGGCATCCAAATGAT
CCACCAAACTTCGACACGTTTCCTCAACAATGTCTCTTACGATCAAGACT
TCCCTTTAATGGCCAATCAAACGTCCAACCAGgaagGTGAGCGACTTGGT
CGTGTGTTGGGAAATAAAGAAGTCTTAATGATGGGTCATCACGGCTTAGC
AACCGTTGGCAAGTCGGTCGCCATGGCATTTGATCTGCATTATTATTTTG
AGAAAGCTGCCGAAATACAAGTGAAAGCTTTACAAACTGGACAACCATTG
AAgaagGTGAGCGACTTGGTCGTGTGTTGGGAAATAAAGAAGTCTTAATG
ATGGGTCATCACGGCTTAGCAACCGTTGGCAAGTCGGTCGCCATGGCATT
TGATCTGCATTATTATTTTGAGAAAGCTGCCGAAATACAAGTGAAAGCTT
TACAAACTGGACAACCATTGAAATTGTTATCAACAGAAATTGCAATAGAT
ACGCATGCGCAGATGGTCGATTGTCAAGAATTCACAGCACATGCccattt
tgatgctctccaaaAAACTCTTGAAAGAGAATATCCTAGCTTCCTAGCTT
GAATTGTTATCAACAGAAATTGCAATAGATACGCATGCGCAGATGGTCGA
TTGTCAAGAATTCACAGCACATGCccattttgatgctctccaaaAAACTC
TTGAAAGAGAATATCCTAGCTTCCTAGCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049_pilon | genome | sc0000049_pilon:954899..959254 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 763-891:4228 |
| Aaloc | 592-759:3675 |
| Aaloc | 490-591:2418 |
| Aaloc | 331-489:1546 |
| Aaloc | 193-327:484 |
| Aaloc | 1-189:1 |
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