XLOC_012206 (mRNA) -

Overview


Name	XLOC_012206
Unique Name	XLOC_012206
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000058_pilon:890917..896245+
coding sequence from alignment at sc0000058_pilon:890917..896245+

mRNA from alignment at sc0000058_pilon:890917..896245+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_012206 ID=XLOC_012206|Name=XLOC_012206|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5329bp|location=Sequence derived from alignment at sc0000058_pilon:890917..896245+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTGTAGGGATTTGT
TTAAACATCTTTTACTTAATATGAATTCTTTTACATCAGTGTACAAGTAA
GATCCAGTGTCCAGTGAAATGTAAAGAATTTGCTGTTGCCAATAGTTGCA
CTGTGTGAgccttttttacattttacaaactacaAAAAAGATATATATCA
TGGCCAAGCTATATCCTctaaatgggctattccatttttaaaccacaGGG
GTATTGTCAAATAATCCCAGGAGGTTGGTTGATTTTTCATAAGGGAattt
ttcttcatataaattcagattttccaaggcaAGGGGAGGGACGTGagagg
cgctgtGgtatagtggtcattgaccttggttgctgcacaggcgactgagg
ttcgatagaccttttttcaaagaggatgtcctgttgaataattatgtagt
ccagccataaaaacaatgatagagccatgaataattactgtatcatgcat
attgtaataattaggcatggttttatcattgtttttcagctggactacat
aattattcaacagggtggcctctttgaaaaaaggtctattcccactcgca
gcggttcacttggccaagtgaatgaacctttgcCCGGGttaacccatgcc
atgtgaggagaATCGGGTAGTCAGccagtctggaaaggagggAAATGTTA
TGCCGGAGCTGCGCCAACTTAACTGGGAAAAGTTGAAGGCAAGCAGATCT
CAAACCTCAAATCTACGCCGGAGATATCCGGCGCACAAGCCGCAATTTCA
AGACTGGgtagcctcctgcaactcaaccaaatagagaaatagaaatagat
tgCCAGTTTGCACTTCATTAAGATTTGCTGGAGATCTCGAGTGCAGCACT
CTTGGAAAATCAATCGGATTATCTTACTCAATATCTCATTTGCCTTCTCA
ATATGAAAGAAACTGCtcagctctaaagctctaacatagcatctaataac
atgaaaatcaGAATATGGtttttcaatgggaatcaaaactgtaaagtgca
cttacaaacatacATTtttcagatctaacaaaattaataacggcactgtc
agtatagacttaaactcatatatcaagattacgggatttcgagtacgggc
cgattttactttcgttttgagtggtttcattttcgatttcaacccaacat
cttagcaacggggtgctcgcccatagttacaggcagtcagggaaatccct
taattgcggtagtaattttttactgcaattgcggtataaacgtcactttt
acatttttcatataccgcaattgcagtatattcaagaaacagaattcttc
aagattcaaggagaaaataggcaaattttgtacataattgatcatatctt
tttaatacacgtagacaaaatattttttccgtagatcagattcttttgat
aaagaaaagctTTATTCTCGTATGATTttttacagtcgatgtttgtttat
ctttatcgaccagcactatatgtagctgttataagcctttgtaggctaac
cACAAATGAAAgctactgcaattgcagtataccgcaattgagggatttcc
ctgactgacaggtgtttgtgcaaaaaactaaacatagaaaattttccaaa
tctcccatttcgattaatgaaatgaaaaatgaaacttttctatgtttcac
ttttttgcacctattcttcaaaatgaaaatatttaagattttaagttctt
gttttattcaatgattttttatggcactttgttgacaatctaactctcgc
atcaaatttccgctttcttcagtaaattgaagatgagaaaaaacctaagc
cacggattACGGATTGAAACGaatatatgaagggtgagattttacagccg
cccctTATgtaaggcactgaaaggccacagGTGCCCAAAAGAAGAGCCGT
TTGAAATGCAGCAACCTCATTGACGTGGAAATTTAGTAAACAGCTACGAA
GGAGGTCTGGGAAGCagtcagtagaagagaccactttcgtttttgttgca
gatttctataaaaacttttctcagggattacttgtcaatgtacatgtaca
catgtgttgtgtcaacttgtcagcatttgTATTGCTGTAAAGGAATAgag
aaaagaggtaagactagcctagtttttaatcctgatataggagtttaagt
ttagactgactgtcatcattgacaatcaaacaaacgatagtctgtcaaga
gccttgtaaacattccaacaactttcaTCGAAATGATCTGCCACAGCtat
gtctaccattttagcgcccggtccgaggattgagccttGAATTGAATCTT
CAGGTcagtaagtttttatttctggtCAGTTTTAACCGATAATCGACCGC
TATTTCGATCACTGAAAGTGATATAAAAATTCTAACAAAATGGTTAAGGG
GGCTAGGGGgttcattttcatcatcaatGCAATGATCGAAATAGCTGTCA
GTTATCATTTAAGCTTCTTTCAACCACTGCAATGATTTTAGGTGCACACT
tgtaaaatttaaagtaaatagatatttcaaaagttaaaatatatttttgt
gtgTAGTAAAAAGCCAGACCTTAGGATCTGTCACTTCTTTTGTTGAACGT
CACCCCCTGCGTTTAGTTAATGAAAGTAGATATGATTTTGAGACATTTTT
GAGAAGAGGCTTGTGAATTAGGCCTGACAAAACTTTTTATGGTCAAGCAT
ATGGGTGATAAATTGAAGAGTATGTTcactgtatttctcaaggaaaatga
cgtatgttcactgtatttcccaaggaaaataaaGTACTTACAAATACAGA
GTTTTCCCTTACAAATACAGAGTTTTCCCTTACAAATACAGACTTTTCCC
TTACAAATACAGAGTTTTCCCTTACAAATACAGAGTTTTCCCTTACAAAT
ACAGACTTTTCCCTTATGTTcactgtatttctcaaggaaaatgacgtatg
ttcactgtattttccaaggaaaatgtgAAGCATGTTCActctatttttca
aagaaaatgaagaatgcACACTCTGTATCTTTCAAGTAAAATTAAGTATG
TTTACTAaacgtagtcgtctaagaaaacagctttttttttttagaatctt
ccttacaatctagtttttctatttataaaaagtagattgctgacgtgtgg
aaaggaatttcggcatgactgatccttttgtttcgataataacatcaaag
cgggaattaattttcttctcgattctttctttcctttttctttcttatca
gttcaGGCTTTCCCTCGCCACTCtcaaagcgtggttagctcaagcggtta
gatcgtctgtctcatatgcatggggctccgagttcgattccgatgggtgt
ccaatttttcaattcttcgattttctttttttaattctctttcttttata
atgaaggtcaattaaacaagtaactagcatatattacctccgctctagtg
ctgcaaataaggaaatttcagttggccggtaattttttgAGTGTAACGAG
CAGGGGGTCCGGTGGAACCATCTTAGAAAACTTTGTAGTATGTGATGACT
TAGCTTGGTTAAACACctattttagtttgaaaactgttcctcttttaatt
agaagcgctatatattaagtatttatctaagcctctaatcttcaaatttt
aaccggacaaaatgaaaaactgagccacagaatgaccggtagaaactaca
aaatgaccggtaattaccggtcacctgccgttatttgcagcactgcgcTC
TCTGtctaaggtttagataagctataATAGCATCACTTattaataagaac
ttttttaagtttttttttcttcaatcatttttttgccacaagcgattatt
cacGGCTAAGATATAGAAGAACGGGTATAGGCGTTTGCGTCTGCGTTTGC
TGACTgacagtttcactttcactaCTTTCACTAGATTCATTTTCAGCCAG
TGAGTGAGCGAGCGATTCTTTGTGAGAGAATCGTCAAATAACTTCTTTCA
GAATCATTGAACTTCTCGTTTTATACTTAAAGGCAGAATAATAATCgatt
tccgggtcaaaatgtttggcacctgatccaatcgtttgcttatctttctt
gcgtggtcgttatttgaatttcagtattcaatgcttataaaatatgGTTT
TTATAAGAGTATTAAACTCCTCACTATgagggaacagatcatagattcga
tttgaacgcgtaattactaatagcaattaacattacataacgcgtcgata
tctcttcactctAATGATAATGTGATATatacaaaattaaagtgatgaga
gaatcacaaaaaaaatcaagaattgaaaaattggacatcCATTGGAATCA
AACTCGGAGCCCCATGCATATGAGACAGAcgatctaaccgcttgagctaa
ccacgctttgaGAGTGGTGAGGGAAAGcgtgaactgataagaaagaaaaa
ggaaagaaagaattgagaagaaaattaattcccgctttgatgttattatc
gaaacaaaaggatcagtcatgtcgaaattcctttccacacgtcagcagta
aggaagattctaaaaaaaagctgttttcttagacgactacgttTGATGAT
CTTTCAAAGTCGAATTCAAAGAAAATCTAAcagttttgaacttttaaaga
tAATTATACTTCTTTGTGCGATTGTACTTGCTGTAATATACTTTTTTACT
CAGAACTCTTAGAATGTCTGACATCTTCTATGCAACAGCATGAGTCTGCT
TTGTAGATTAATTCATTACCATGATTATTAATTCTAATGTTCCAAAATCT
TTTCTTAACTTGAAAAATTTTCAATAGGTAAGCAAGTTTCTGCATATATA
GCTCACTAATgtttaggaaatatttttttaagggCTAACAAAAAGATAGA
AATGGCAGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttc
aaaaaatgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTG
GATGTGCAAtacaatgaaaataaagttgTGAAAGATGAATTAGATCTTGT
CGAACCTGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAAC
AGGATTTATCAGAAGCGAAATTAAATGTTGGCAAACGTCTAGATTATATA
CAAAGTGAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAA
ACAGGAGAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAAC
AACTGTTACCAAAACAGGCTGCAAAATAG

Coding sequence (CDS) from alignment at sc0000058_pilon:890917..896245+

>XLOC_012206 ID=XLOC_012206|Name=XLOC_012206|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=870bp|location=Sequence derived from alignment at sc0000058_pilon:890917..896245+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTCATGCATCATCGAGGAAAACAAGCTACAGAATGTAATTCATGCATC
ATCGAGGAAAACAAGCTACAGAATGTggCTAACAAAAAGATAGAAATGGC
AGCAAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaaaaa
tgcagaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGATGTG
CAAtacaatgaaaataaagttgTGAAAGATGAATTAGATCTTGTCGAACC
TGATTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGGATT
TATCAGAAGCGAAATTAAATGTTGGCAAACGTCTAGATTATATACAAAGT
GAACTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACAGGA
GAAGAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAACTGT
TACCAAAACAGGCTGCAAAATAGggCTAACAAAAAGATAGAAATGGCAGC
AAAGATCCAGGAACAATTACAGAAAGAAATTGatgtatttcaaaaaatgc
agaaaGACTTGCAAAAATTAGTGACTGGAAGACAACAGTTGGATGTGCAA
tacaatgaaaataaagttgTGAAAGATGAATTAGATCTTGTCGAACCTGA
TTCGAACGTTTACAAATTGACTGGACCTATTCTTGTTAAACAGGATTTAT
CAGAAGCGAAATTAAATGTTGGCAAACGTCTAGATTATATACAAAGTGAA
CTGAAGCGTCATGAGAAATCAATCACAGACCTTCAAGGTAAACAGGAGAA
GAAGAAAGAATCTTTAACCAAACTGCAACAGCAATATCAACAACTGTTAC
CAAAACAGGCTGCAAAATAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_012206	XLOC_012206-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000058_pilon	genome	sc0000058_pilon:890917..896245 +

Properties


Property Name	Value
Aaloc	40-435:4934
Aaloc	1-36:1

You are here

XLOC_012206 (mRNA) -