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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000124_pilon:642839..648956+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_012087 ID=XLOC_012087|Name=XLOC_012087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6118bp|location=Sequence derived from alignment at sc0000124_pilon:642839..648956+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaacaaattaaaaatggcaccccgtaaaagacccaaaacaagactaga
aaatagagcgaaaaaaTGGACTCAGAGGACTTTGAAAAAGAGACGTGAAG
ATACTACTAAACAATATACAAAAATCAAGAGGAAAATAGCTCCAATGAAA
GATGAATTTGTTAAAATGAACTTATTAAATGATATACAGAAAAATGTAGT
TGTGAGTATCAAAACAGAATCAAGCTATACCTCACAATCAATATTTAGGA
GGGTGACAAGTGGTTTGATGTATCCAATCACCTTTTTGGTCAATCTGTCG
ATTTCAAAGGTAAAAATATTGATCTTTGTTGCGGTTTTGTTTAATCTTTT
TCATCTAGAGTGTGCACAGGTGTGCAATGTTGACTACATTTTGTGCAGTG
GAGCTAAATTAATTGCCCTATATTAAACCTTTCCCTGCGCTACTATTCTA
GTTATTGGTTATGATTTTAAACTAGATCAATttgaataaaccagccgagg
ctggaaggtcaggcaatagagcttagctagatagctttaataagtgggtt
aacagatgtaagagatgcactgaaacagagtagactaaatatgttgaata
atgtacaaaatgtgaaacatttgataacttgatttaaaattatgtaaaac
aagcctgagagctcctccaaccccccccccccccccacgagaagctcaaa
gtatacttctctttagcattgtccatatatagtacgtacgcaaagatttt
ccaaatatttgacaccccctcccccttgtacacAGAGAACAgtagaaatg
actttgtttaaacaatagatgtacgcttttgctgaactccctctccccct
tcactgtgtacgtactatatggatggccagtctgggtaaataaattttgt
agtttagtaaccgtcaagttacacaacatgcacacaaccatcttgaagac
tttgctggtcgcaaatgatagtcgaaagcaaaacttaaaattcacaacta
tgcggggaagctcattttcccccgttttgctttaaactcgcttttgattg
gtctatgaatttgggcgattgatttaccgccttggcggaataaacacaca
accataataaataaattcaacagggcagcggtgtagcaattaatttcaac
tgggagtcctctcttctgtgccaagcactggcagtgttttttaaacttta
aaacaatgttaaatgaagaccagattgatctgtttgttatgactgtgcaa
gttgtgacgagagtgtgcacagcatgttgtgtaactgttatcgccattca
ttccattccatcattcagtcaaaatgtgcgccaaggttagaaaaggttag
aaaaacacaatctgcatccggaactgcgtgaaaaatagtttgataaattt
caataagaactgtatatattaatactaatataaatgatcaaattccaaag
accatttgtcataattttgcaagtccaataataggagatgtgatgtcatc
atttggttcccgtcatctgatttacggtTATACgagctggagagtcggaa
agcttttccgctgctttgctggatttccactgtcgacctctgcacgctct
gtgtttaaaagttttcaaatcgaagtagagagccgcatgctaggagagta
aaccgaaaacaccaatttatccacggtttctcaattataaattcggatca
gtccacacgaattccctttcaacaagatgtatagctgcttcttaacagaa
aaataatttcggatgaccgaacgactcccactttttaaagtagaaatgac
gggaaccaaacagttttttgcgattcgccttctttatcacaaacacgtcc
aagtccaaaaaagcacgattgcatccagtctttatatcaaatttatacag
tagctgtacttttgtaaactttatcaaatcccaataacataacaccatca
attcccctagaggcaaacaaggaaaatatgcttttattgcaaaaactata
ttaaaaagcagcaataaaaagaaaaagtatatatcagaaaattcaacata
aacaaaacttgagcaaacggctttaaaccttcaaaggatatagaaaaaga
atccccttgatgaaaatcatttgtttgatttgccgagttaaaaaaataaa
tgacagaaattgaagcttgcaacagatttacactggaaataatttggtac
aacactgatcacatctgactatcacttgagccgccatcttgaaactacat
tatgatctgtaaaaacaacgcacgctaaaagtacccaaaaggttaacccg
atcggaagaaagtttagaaatcaaagtgagatcggaaaatcgtaAAACAA
CATTGCCGTCttatggaagaagaagaagaaccgaattttacctatttgaa
tgctcagcttaggctgaccaattaaattgatttttgaattaaattaattt
ttaaattaaattagtatattatgtaatcacatgataacgagtgcaattcg
aatataacaaaaaaattacgagtgcaattttcaaatTGTGCGAGTTATTA
tatgattacgagctaatcgcacaatggctttcacttctttttcccagtta
gagttaaattacagaaattacgctgagcgttttatttttttctcttctct
ttatgtctttcttttattgtttatatgattttctttctcacaaaataaat
ttcgaacgcaattaaaacgttcgatgtaaaaaaaatgtatgaaaaaacat
taaaatcaattttgtaaacattagCGCGGCATTGGAAAGTgggattaacg
attaattgctctctttgacgacgtgccaaataagaaaaaataacccatcg
tgcgattaatttaattaatcaatttaaatttttgcgcCCTTGACTTTGGC
ACTTCACAATACAAAATGCGAAGAATTTTAATATGAAGAAATGGGTTGCA
GGTTAAGTAGCATGCATTTTGTCCTTATACTCGTCTACACTGCGCACTAC
AGTCTAAgttcttgaaaacaaaattaatgTTTTCTATCATCAGGTCAACA
ACGCTTCACAATATTTGACGAGACCTTTCAGGCGAACGCAAGATCGACTT
TCACTATACGAAGAACGAATATCACATCTGGAAAAGGAGGTTGCCCTGTT
AAAAGGCTCACAAGAGAAGGTAAAACTTTTTGCAATTTAGCAAAGAATAA
GAAATCTTAATAAAACGTTAAATAGACGAACCTTCCTTGAATACTCATTC
AGAATAGTCAATTCATCGTCTCATTATTGTTACGTTCAAGGTTGAAAATA
TACTTCTTAGCATACCTCCACAATCAGCAAACACAGCACCAATGATCAAT
AATCTGATCCCACCACCACTACCTTCCGCCCCACAAATGATGGCTCCTCC
TCCTCCGCCACCGCCCCCTCCGCCGCCACCACCACCTGCAATGAGTATTC
CTTCAAAAATTGTTGTGACTCGTTCAGTTAAAAAGATCGAAAATCCAAAG
GTAAGAGTTTATTGCTATTATCACATTATACGATTCTGTGAGAAATGTTC
AAAGTTAATAAATGGAGTGTTAGAACTAATAAGAATGATTTTATCCTACT
TTTTGGAGATTACGGCAATGTTCGTGATCATGATTAACTGTAGTTTATCG
CTTCCTTTGTTATCTTAAAAACATTGTTTTGGCTTTTTTGTCGTATTCTT
AACAAGTATTGCGTAGTCTAATTATATTTACAgttcttgattttcttttt
tctttctgcaGAAAAAGGAAATAGCAGACAACCCACAGATCACTAAAGAA
CTTTTAAGTACCGTCACCCTAAAGAAAGTGACTAAGGTCTTGACAGAATC
AAACAAGGAGAATGTCCCTTCGAGTGGAGGAGGACCCATGATCTCACTTT
CTCAACTTAAAAAAGTGAAGTTGAAACGAACTACCGTTTCACCGAAGCGG
TTGACTCCAAGGCGACGGGATGGCCAAGGATCATCTGCTACCAAACACAG
CGGTGGTCGGAGATCTCATGAAAAGAAAAGGTTATTACTAAATCAGTAAA
GAGGCTTGCAACCACTACTATTCTttatttggactaaaatttactATCAG
CAATCTTGATCTGAACCGAAAAGTCGTACCCTTCCAGGGATAGTCGGTAC
TAAGATCTCAACCATCATGTTTTTTAAGTGACGCGGTGGTAAATAAATTA
acttaaaaatagattttagtaCGAAcccccccccATCCTGACTCCACTGG
TCGTtattactgaggttaagcatgccaggataatcacgacgacggacgga
aatcggccttttgagccttcaatgtttcttacatgtttctaaactttgtc
aagcttaaaggacgcatgttgataatacaatagtctaataGACTAACcta
cggtactttcctatcttctatattgattttctgactttctcaagtgtttc
taactgttataAGTAtttttttGGAACTTTGTCTTCAttggaagattcta
aaaaaaaacgaattaaaaaatgttattttctcattctcagcctcagcatg
ttttttagatgtttcttagtttttaggcattctgagcctcatgtttctta
aaagtttgtttcttaaagaaaaaaacgtgtatcgcaTCATATTGTCACTC
CTTAGTTTATGTTGTCTCTTTCTGTACTTCTTTAGATTGGTAAGGTAagg
atttttcatgttttcctTTTAATAGAACACCGGAGAATCCGTTCAAAAGT
CGTTTACGGAAGCGAAACGTCATCCGAAGCCCTGGAGGAACACCACTGGT
GAAAAACAATTACGAGATGAGCATGGGAGAAGGATTGACCCCCTTGCTGA
GCAAtgcattgaaaaagaaattccacgtaagaaaattttcgataaaCCTA
GAAAGAGATAGAAAGGTAAACTCCCATGATAGCTATTGTGTTACAGATTA
CAAAGGCTTGCCAAATTGTTcaagtgtttaaaaaaaagtcttttcGTTTT
CTACTTGATTTTCAATCAACAACCGAAACGTcaaataatgaataaaatta
gatttttagttttcactttttttatcaaatcaaCAACTTGTTTAAAACCC
AGAATAAATCTACGAGGGACCTCATCTTATGCAGAGTTCTCTTGATTCTT
CCGATCGATGCCCTGGCATGGGTTACATTTCGATTGGATTTATGGTGTAT
GACTACTGTGATACTAAAAGAGTCTTTCTGTTTCTATTTTTCATAGAATG
CAAAACCTGCACTCACACCGGAACACGAGCTATCAAAAGAAGGATCACCA
AGTGTCAGCTTTCCCTTTGTAGgtcacatttctttgttttttttccttga
attttgTAGTAATCTTCttcgtttattttgatttcCGGATATTTCTTAGG
CTCCGGATATTTAGCGGaccactcacatatcgattcttcccacgactaac
gtcaaaatGACGCTTAGTCCAAGTCCTCGTCTCGTCTTGATGCCAATTTT
TTGTGTaaaacccatgaaaaatagaggaaaaaactatgcgtagcgagggt
agttaacaaaataaaaaaatatcagtaAGGCTTGGgaacacgagaagttt
tttcgcgttggtgtatgcaacatgctccatcccaccaacctgaaacgctt
tctcgtgtctccaccccatttttcttttaataacattttatttgtgcttt
tctcacttttgtccctaatcagcgtgtcttttgggtattttcctcacttt
ttgtcccatgaaacaagaaaagaaaccatgagacacgcacttttttcttg
tgttggtgggatagagcatgttgcactGCACCAACGCAAGTTCTCATGTC
CCCAAACCTTTAGAACAATTATAATTTAATCAGCCGCGAAAATCGATGTT
TTGATTGGTTTTCTCAGCGTCAATGCCTCTGACCCCCACCCAAACCCCAA
CGCGTCAACTTGACGTTAGTGTTGGGAAATATCAATATGTGAGTGGCCCC
TAGATGTTCCAACACTGCATTATTGACTTACATCCAGAAGACACTTCACT
TACCCTTCTTATCCTTTCTCTTTCAGGAAAGTTCTCCGCAAATTTTCGTA
TCCTCGCCTGCAGTATGA Coding sequence (CDS) from alignment at sc0000124_pilon:642839..648956+ >XLOC_012087 ID=XLOC_012087|Name=XLOC_012087|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2358bp|location=Sequence derived from alignment at sc0000124_pilon:642839..648956+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaacaaattaaaaatggcaccccgtaaaagacccaaaacaagactaga
aaatagagcgaaaaaaTGGACTCAGAGGACTTTGAAAAAGAGACGTGAAG
ATACTACTAAACAATATACAAAAATCAAGAGGAAAATAGCTCCAATGAAA
GATGAATTTGTTAAAATGAACTTATTAAATGATATACAGAAAAATGTAGT
TGTGAGTATCAAAACAGAATCAAGCTATACCTCACAATCAATATTTAGGA
GGGTGACAAGTGGTTTGATGTATCCAATCACCTTTTTGGTCAATCTGTCG
ATTTCAAAGaaaaacaaattaaaaatggcaccccgtaaaagacccaaaac
aagactagaaaatagagcgaaaaaaTGGACTCAGAGGACTTTGAAAAAGA
GACGTGAAGATACTACTAAACAATATACAAAAATCAAGAGGAAAATAGCT
CCAATGAAAGATGAATTTGTTAAAATGAACTTATTAAATGATATACAGAA
AAATGTAGTTGTGAGTATCAAAACAGAATCAAGCTATACCTCACAATCAA
TATTTAGGAGGGTGACAAGTGGTTTGATGTATCCAATCACCTTTTTGGTC
AATCTGTCGATTTCAAAGGTCAACAACGCTTCACAATATTTGACGAGACC
TTTCAGGCGAACGCAAGATCGACTTTCACTATACGAAGAACGAATATCAC
ATCTGGAAAAGGAGGTTGCCCTGTTAAAAGGCTCACAAGAGAAGGTCAAC
AACGCTTCACAATATTTGACGAGACCTTTCAGGCGAACGCAAGATCGACT
TTCACTATACGAAGAACGAATATCACATCTGGAAAAGGAGGTTGCCCTGT
TAAAAGGCTCACAAGAGAAGGTTGAAAATATACTTCTTAGCATACCTCCA
CAATCAGCAAACACAGCACCAATGATCAATAATCTGATCCCACCACCACT
ACCTTCCGCCCCACAAATGATGGCTCCTCCTCCTCCGCCACCGCCCCCTC
CGCCGCCACCACCACCTGCAATGAGTATTCCTTCAAAAATTGTTGTGACT
CGTTCAGTTAAAAAGATCGAAAATCCAAAGGTTGAAAATATACTTCTTAG
CATACCTCCACAATCAGCAAACACAGCACCAATGATCAATAATCTGATCC
CACCACCACTACCTTCCGCCCCACAAATGATGGCTCCTCCTCCTCCGCCA
CCGCCCCCTCCGCCGCCACCACCACCTGCAATGAGTATTCCTTCAAAAAT
TGTTGTGACTCGTTCAGTTAAAAAGATCGAAAATCCAAAGAAAAAGGAAA
TAGCAGACAACCCACAGATCACTAAAGAACTTTTAAGTACCGTCACCCTA
AAGAAAGTGACTAAGGTCTTGACAGAATCAAACAAGGAGAATGTCCCTTC
GAGTGGAGGAGGACCCATGATCTCACTTTCTCAACTTAAAAAAGTGAAGT
TGAAACGAACTACCGTTTCACCGAAGCGGTTGACTCCAAGGCGACGGGAT
GGCCAAGGATCATCTGCTACCAAACACAGCGGTGGTCGGAGATCTCATGA
AAAGAAAAGAAAAAGGAAATAGCAGACAACCCACAGATCACTAAAGAACT
TTTAAGTACCGTCACCCTAAAGAAAGTGACTAAGGTCTTGACAGAATCAA
ACAAGGAGAATGTCCCTTCGAGTGGAGGAGGACCCATGATCTCACTTTCT
CAACTTAAAAAAGTGAAGTTGAAACGAACTACCGTTTCACCGAAGCGGTT
GACTCCAAGGCGACGGGATGGCCAAGGATCATCTGCTACCAAACACAGCG
GTGGTCGGAGATCTCATGAAAAGAAAAGAACACCGGAGAATCCGTTCAAA
AGTCGTTTACGGAAGCGAAACGTCATCCGAAGCCCTGGAGGAACACCACT
GGTGAAAAACAATTACGAGATGAGCATGGGAGAAGGATTGACCCCCTTGC
TGAGCAAtgcattgaaaaagaaattccacAACACCGGAGAATCCGTTCAA
AAGTCGTTTACGGAAGCGAAACGTCATCCGAAGCCCTGGAGGAACACCAC
TGGTGAAAAACAATTACGAGATGAGCATGGGAGAAGGATTGACCCCCTTG
CTGAGCAAtgcattgaaaaagaaattccacAATGCAAAACCTGCACTCAC
ACCGGAACACGAGCTATCAAAAGAAGGATCACCAAGTGTCAGCTTTCCCT
TTAATGCAAAACCTGCACTCACACCGGAACACGAGCTATCAAAAGAAGGA
TCACCAAGTGTCAGCTTTCCCTTTGAAAGTTCTCCGCAAATTTTCGTATC
CTCGCCTGCAGTATGAGAAAGTTCTCCGCAAATTTTCGTATCCTCGCCTG
CAGTATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000124_pilon | genome | sc0000124_pilon:642839..648956 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1138-1179:6077 |
| Aaloc | 1066-1137:5247 |
| Aaloc | 916-1065:4727 |
| Aaloc | 646-912:3762 |
| Aaloc | 436-645:3291 |
| Aaloc | 310-435:3044 |
| Aaloc | 1-309:1 |
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