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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000268_pilon:165320..168606+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_011961 ID=XLOC_011961|Name=XLOC_011961|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3287bp|location=Sequence derived from alignment at sc0000268_pilon:165320..168606+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaaagccaCAACATCCTCAGATGTTCCAAAATAGTggtgagttcaa
actttaaataacGCTCATATGGTTTTGACAAtgtgttcttgatattttca
tAACTGGATATTGTTATTGATGCACATGTACACTCTTTTTGTAAGAATGG
TGCTTTCCTCTTTATTTTGCAGATGAACAGTAGGTGTTAAACAGCTCGTC
AATCTAAGTTTTTGACAAATCTGGctttatttcatttgtttttcagTAAA
CTTGAAAGACTCTGTAACCACCAGTGAAGTCCCAGATTCCTTTCACAAAA
TGTATCGGAGGTTTTTAAAAACGATCAAAGATGATGATAACTTCGGTGAA
TTATTATGTCATCGAACAGCCAGTCCTGTCTTGCAGGTTCTCGTTATCAC
ACTACAGGTAGGAAAACCACTTCATTAAGACCTTCAACCTCTAGAGTACA
ATTAGAGTacattgttcttatgaaaaagcgtATATTTGAATATGAAACAC
TTTGGAATGAAGCTGAAATGACATGATTTGCTTCCATAAcaatttaaaca
aaagaaaaaacagctTTCTCCCCTATCGGCGCCGCCCTAGcacaattttg
agaaattcttttgtgtATTCGTGGCGAGGCTCCTTTTATATATCATGAAA
AAGAATATGTTTACAAGTATCTACTACTTCTTTTCTAGAAAGTCAGCACT
GAGAAATTCGCACAGATGACCGAATTGATCGTTCGAAAAGCCAGGATTGa
gatgacgtcaccaaacaacaaagatggtGGAGAAGGTGTGGATGATAGCG
AcgaaagtgaagaagaagaagatgaagacaCTTTTCATAAGTAAgatgtt
ttttgtattttctaacATCGATCGAATATTTTATGAGACAGGAGGTCTCA
ATATCGATCCAACATCACCAAAAGTAAATTAGGAACAAACAATGTTTTAG
TTGATAATTTACTGACTGATTATTGTGAGAGTTCGAGGAAGGGCGAAGGA
GTGGGATTCCGTTTTGAAAGCGTTGAAAAATCAATTATCATCCAGAAAGG
AGCACTGAACAACACCTTTCATGACCAATGTTTAGCCTAACTCCGAACGG
ATTCTGACTACTCCGTGGTGGTACATAATATGACGTTGCTCAGGTTCGCC
GTTCGCTTTTGgactttttattcagtttttggATGAACTTTTCATAAGCT
TTTGAGCGTCATGATTGGCTTAAGCAAAATAATGGCTCCAAAAACAAGTG
CCAATCgtaaacataaacattagaacccactcacttttgctttcattttc
aagcaaaagaaaACGtgcttttgaatgttttggctgAACTACTCAGCTCA
GATCGTAAATTAGCCATATCCCTTTAAGAGCAGAGCATGTTATACGCAGA
GTGGATAATCTACTATGAGCTTATGTTTAGCTGCGTGAACttttttttag
ttcgatgtttttatttactttttcagaTTACCAGTCGTGTTAACGGATCA
AGTAGGTAGCCATTTATTCGAAGTGCTTTTACAAACAGCCGATGAAGAGA
CGTTTGACAACCTCACCGTACGGTGTATGTTGAAGATGTTGGTCTCACTC
AGTATCCACCCTATCGCTAACTTCCTGGTACAAACCATGCTCAGATGTat
ggataaaaagaaaaaggtacGCATATTCCTTTGTTGTGTGGGGACTTGCC
TACAATgcattttctttagaaattcaTCGGTAATGCAACAAAATCCCTCT
CATTGTTTTAACCGTATTTTGGATCCGTAGGGTCAGTATATGTACATGTT
CTTTGTGACTTTCGGAGGGGTTTTGTTTCACTTTTATCAGACCAGCAAAT
GGGAAATTAACGAATTATGCGAATTATGAAGTGCTAGGTCAGCGAAATTA
TGCAAACTTAGTTGATTTCCACGACCGCAAAATTAAAGACCTTTGTTTCA
AACGCCATCTGAAACCTCTTAGCTTTTTATGTGGACAAAGTTACATACTT
ATGATACCCGTGCCGTAACAATCAGAAAATAGCTTTAAACTAATTACTAG
CATTCATTGTAGACTGatttaatcattttattgtAGGCCAAACCATTCAT
TCGTAAATtatcaaagtttactgaagatATCTTAGCCGCTGGCCACATGG
GTTGTATCGTTCGAGTGGCTGAATcgatatccaggctaggtttATCAGAC
CAAGAAGAGAAGTTCATTGAGACGTTGACGCGTTCTTTACATATCCCTGA
AGATCCAGAAAAGATGGAAAAATCGTTCTGCAAATTAGTCCTCTCTATGA
TGACTCAtgatattttttacaaagttgAGCTTATACCGAGCGGAGAACCC
GACCATTCTTTGAAGAACGATGCAATCAATTACCACGGTGCTTGTTTGTT
GAAAAGTTGTCTATCCTTCAAGAAATGTCAAATGATTGCTAAAAGTTTGT
TGAGTTTGAATAAGGAAGAGTTAACAACAATCGCGTGTCACCCAAGTGGG
AATCACGTTTTCGAGAGCTTTCTCAGTAACACaaatattaaaaagaaaat
gaagaactCTTTATCTGATATGTTTCGAGGGAAATTCGCGGTATTAGCGA
GCGATAAATTTGGTAGTCGAGTAATTGATGCTTTATGGAAAAACGTTGGA
GAAGAATCTAAAGACTTTATTAAAACTGAGTTAACTCAGAATAAATCGAG
ATTGGAATCAGATTTATATGGACGTATTGTGCTGTGTAATTGTGAGATCA
ACCAACAGGCGCGCAAAATGAGAGAGATTAAGGAGAAACAGgataaaaag
aggaaaatgtTCGAAGATATTTTACCGGTATCGAAAAAAGAGGAGAAATC
TGTAATGGTTAAGGAGGAGGAACAACCACCTgctaagaaaaccaaaggaa
agaATAAAAGTAAGTAATGGTTCTGAAAGTTTCAGTTTTTACATAAtggt
tcccgtttcatatcagtcACATGTTTTAAATCAGACCGGTGTTAGATTGT
GTTCGATTTCGTGCTGATGAAtagccaaaaaaagtttttcttttccattt
gctaaccaatcttgctctaagttttttgaatttgttctACTAGAATGTCT
GTTTAGGCCTTTTTAAATCTAAAGTTACAGATCCTCGCGGTTGGTCGATG
TTACCCCATTATCCCAGTGTTAAGGCTTTCCTTTCACAAAGATTCGTTCT
TATCTTTCCTCAGATGATCGTGTGGCGAAATATCGTGAGCAACTCAAAGC
GTTGGGCATCAGTTTTGACGATGAAGAGCAAACCTAA Coding sequence (CDS) from alignment at sc0000268_pilon:165320..168606+ >XLOC_011961 ID=XLOC_011961|Name=XLOC_011961|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000268_pilon:165320..168606+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaaaaagccaCAACATCCTCAGATGTTCCAAAATAGTgaaaaaaaagc
caCAACATCCTCAGATGTTCCAAAATAGTgTAAACTTGAAAGACTCTGTA
ACCACCAGTGAAGTCCCAGATTCCTTTCACAAAATGTATCGGAGGTTTTT
AAAAACGATCAAAGATGATGATAACTTCGGTGAATTATTATGTCATCGAA
CAGCCAGTCCTGTCTTGCAGGTTCTCGTTATCACACTACAGTAAACTTGA
AAGACTCTGTAACCACCAGTGAAGTCCCAGATTCCTTTCACAAAATGTAT
CGGAGGTTTTTAAAAACGATCAAAGATGATGATAACTTCGGTGAATTATT
ATGTCATCGAACAGCCAGTCCTGTCTTGCAGGTTCTCGTTATCACACTAC
AGAAAGTCAGCACTGAGAAATTCGCACAGATGACCGAATTGATCGTTCGA
AAAGCCAGGATTGagatgacgtcaccaaacaacaaagatggtGGAGAAGG
TGTGGATGATAGCGAcgaaagtgaagaagaagaagatgaagacaCTTTTC
ATAAAAAGTCAGCACTGAGAAATTCGCACAGATGACCGAATTGATCGTTC
GAAAAGCCAGGATTGagatgacgtcaccaaacaacaaagatggtGGAGAA
GGTGTGGATGATAGCGAcgaaagtgaagaagaagaagatgaagacaCTTT
TCATAAaTTACCAGTCGTGTTAACGGATCAAGTAGGTAGCCATTTATTCG
AAGTGCTTTTACAAACAGCCGATGAAGAGACGTTTGACAACCTCACCGTA
CGGTGTATGTTGAAGATGTTGGTCTCACTCAGTATCCACCCTATCGCTAA
CTTCCTGGTACAAACCATGCTCAGATGTatggataaaaagaaaaagaTTA
CCAGTCGTGTTAACGGATCAAGTAGGTAGCCATTTATTCGAAGTGCTTTT
ACAAACAGCCGATGAAGAGACGTTTGACAACCTCACCGTACGGTGTATGT
TGAAGATGTTGGTCTCACTCAGTATCCACCCTATCGCTAACTTCCTGGTA
CAAACCATGCTCAGATGTatggataaaaagaaaaagGCCAAACCATTCAT
TCGTAAATtatcaaagtttactgaagatATCTTAGCCGCTGGCCACATGG
GTTGTATCGTTCGAGTGGCTGAATcgatatccaggctaggtttATCAGAC
CAAGAAGAGAAGTTCATTGAGACGTTGACGCGTTCTTTACATATCCCTGA
AGATCCAGAAAAGATGGAAAAATCGTTCTGCAAATTAGTCCTCTCTATGA
TGACTCAtgatattttttacaaagttgAGCTTATACCGAGCGGAGAACCC
GACCATTCTTTGAAGAACGATGCAATCAATTACCACGGTGCTTGTTTGTT
GAAAAGTTGTCTATCCTTCAAGAAATGTCAAATGATTGCTAAAAGTTTGT
TGAGTTTGAATAAGGAAGAGTTAACAACAATCGCGTGTCACCCAAGTGGG
AATCACGTTTTCGAGAGCTTTCTCAGTAACACaaatattaaaaagaaaat
gaagaactCTTTATCTGATATGTTTCGAGGGAAATTCGCGGTATTAGCGA
GCGATAAATTTGGTAGTCGAGTAATTGATGCTTTATGGAAAAACGTTGGA
GAAGAATCTAAAGACTTTATTAAAACTGAGTTAACTCAGAATAAATCGAG
ATTGGAATCAGATTTATATGGACGTATTGTGCTGTGTAATTGTGAGATCA
ACCAACAGGCGCGCAAAATGAGAGAGATTAAGGAGAAACAGgataaaaag
aggaaaatgtTCGAAGATATTTTACCGGTATCGAAAAAAGAGGAGAAATC
TGTAATGGTTAAGGAGGAGGAACAACCACCTgctaagaaaaccaaaggaa
agaATAAAAGCCAAACCATTCATTCGTAAATtatcaaagtttactgaaga
tATCTTAGCCGCTGGCCACATGGGTTGTATCGTTCGAGTGGCTGAATcga
tatccaggctaggtttATCAGACCAAGAAGAGAAGTTCATTGAGACGTTG
ACGCGTTCTTTACATATCCCTGAAGATCCAGAAAAGATGGAAAAATCGTT
CTGCAAATTAGTCCTCTCTATGATGACTCAtgatattttttacaaagttg
AGCTTATACCGAGCGGAGAACCCGACCATTCTTTGAAGAACGATGCAATC
AATTACCACGGTGCTTGTTTGTTGAAAAGTTGTCTATCCTTCAAGAAATG
TCAAATGATTGCTAAAAGTTTGTTGAGTTTGAATAAGGAAGAGTTAACAA
CAATCGCGTGTCACCCAAGTGGGAATCACGTTTTCGAGAGCTTTCTCAGT
AACACaaatattaaaaagaaaatgaagaactCTTTATCTGATATGTTTCG
AGGGAAATTCGCGGTATTAGCGAGCGATAAATTTGGTAGTCGAGTAATTG
ATGCTTTATGGAAAAACGTTGGAGAAGAATCTAAAGACTTTATTAAAACT
GAGTTAACTCAGAATAAATCGAGATTGGAATCAGATTTATATGGACGTAT
TGTGCTGTGTAATTGTGAGATCAACCAACAGGCGCGCAAAATGAGAGAGA
TTAAGGAGAAACAGgataaaaagaggaaaatgtTCGAAGATATTTTACCG
GTATCGAAAAAAGAGGAGAAATCTGTAATGGTTAAGGAGGAGGAACAACC
ACCTgctaagaaaaccaaaggaaagaATAAAAATGATCGTGTGGCGAAAT
ATCGTGAGCAACTCAAAGCGTTGGGCATCAGTTTTGACGATGAAGAGCAA
ACCTAAATGATCGTGTGGCGAAATATCGTGAGCAACTCAAAGCGTTGGGC
ATCAGTTTTGACGATGAAGAGCAAACCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000268_pilon | genome | sc0000268_pilon:165320..168606 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2746-2817:3216 |
| Aaloc | 1921-2742:2087 |
| Aaloc | 1732-1920:1478 |
| Aaloc | 1579-1728:689 |
| Aaloc | 1420-1578:249 |
| Aaloc | 1378-1416:1 |
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