XLOC_011862 (mRNA) -

Overview
NameXLOC_011862
Unique NameXLOC_011862
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000353_pilon:227315..234188-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011862 ID=XLOC_011862|Name=XLOC_011862|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6874bp|location=Sequence derived from alignment at sc0000353_pilon:227315..234188- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCCGAAGAAAAGAAATTCTTTAGAAGGGTGAGTTATTTATACTTTTT ATTATTTTCTGCATTAGGAAACTATAGGAAATACACTATAACATTTTTGC CGTCATTAGAACTTTGTTTTAAGCTTGACACCTTTTCTAAAGATATTTAT TTCCATGATATAGAAAGAAGGCAGAAATTTCTAAAAATTTGCACTCGAGC AGCACAGGATGGGAAGAAAGTTGTTTCTTTTTTTTTTTGAAATGCTGTAC TTCTTCCAAGCAAATAGTAGAAGATTCTTTAAAAGGAATGTTTTGTTGTA GATTCTATTTCCACGAGTTCTTAATGATCTGTCCAAATTTTACTGGATTT CGAAAGTCTAATGGCCGTGGTTTATTTTCATGGTTTTTCAATATCCAGAA CTGATATAAAAGCTAGAATAACCCTGAGCGACAGTATTTCTCCATTTTCT ATATTATATAAACGGTTATCAGAAAACTTTTACAGCTTTACAGATGAGAC ATATTTATTGCAGAATCACGATTTTTAAGGTTTCTTCCGAAAAAAATATT ACTCAAAGGTTTTTCTAAAGGTTGGTGGCTTTTTAAATGTTTCAAATAAA GATTTTCCTATCATTGGCATATTTCTCTTTGATACTTTTTTGTTTTTGAA AACTACTTTTAAAATTTCCCATTTTGTCAAAATTAGCATTAGAGTTTCAA ATCTTCGAAATTCTATCATAATAAAAATGCTAAAACTTTTATAAAACACG TGGAAAACAAAAGTAAAATCACTCAGTCAAGGGGTTTAAAGTGAGCATTG AGGTAGTTAAAATAGATCTCCTAAATTTTATATTGACCACAATAACCGGT TTTCTCAGTTTCCTTGGAAAAATCTAAGCAGAGTCTATTTTCATGACAAA TTCATGTGAATTTTCAAAATTGGCTTGCAAAGTTTAAAAAAATGCAGTGT GTCTGGAAAAAAGCAGAATAAAACGATTTGACCTGATTAGTCCATTCCTG TTTCAATTACCTAAGGAAGTGAAATGATGAATTTTGAGGATTTTACTTTG TATAAAATATGAGCTTTGTTTTTTTGATTCGACACCCTGTATACCCAAAG CTAGGTGTCTAATGAAAAACCAGAAAAACTCAATCAAAATCAATTGATTA ATCCAGATGACAAAATGAAATGTTTACCTGTAACCATGAATGACCAAAAC CTGAAAAGAGAAATGAAAAGATTAAATTATTTTTGATAATAAACCCCCAG AGGAGTGTAAGGGTTGAGGAATGCTGGGTATGTGCGTGGTAGACCTTTTT ACCCTTAGAGAGGCTGTTTTTTGCTGAAAAGGTGATCTTTTAAAGCTCAA AAATTTTTGAAGGTCTGTCAAGGTCACTGGATTTAGCTTTTTAGTAATTT TCGAGATGTATTATATGATTTTCTTTGTAGAATCCTTTCATGCTCCTGAG CAAAACCTTTTGAAATTTTGGGTTTTGGGACAAAAAAGGTACATTTTCAG GTGTTCGAAAACAAAAAAGACAAATGGGTTTGACACAGACGTTTTTTCTA TGAAAACTTATTTGTAAATTCTGACCCTAGGTGCCTCTTTTTTTCTGGTT TTGTAAGAGTCAGTTAAGGTCCAGGGATTTTTTTATTTAGCTCATTTTAA GGAGCTTCCAGCTTTTTTAACTTCCAACATAGACATTTTTTGCTAATCAT TTTGAAACTAAAAAATTAGCAGAGAAAACATTAAGAAAAAGCAGAGGCAC ATATTGAGATCATGGAACTTGGGCATTTCCACATCGACTCGTGCAATGTT TAAAAAATTTGGATTTTCCGATATTTTTATTTTTTGGAACATTTTACATT GTACAGAACATTCTACCAAAGCAACAAGGAAAGACTTGAATAGAGATGTT TTAATGGGAATAGAACACCTTTGACATAGCTGGAACGCCCCTCCTGGAAT CCCCCCCTGAGGGAGGGATAAAACATCCAGCAGCAATTGGTACCTAATTT TAGCCTGTGGCTAGGGGGGAGTAACCATGTTAGGGGTCACCTAAATTTTT TCAGATGGACCTGGGGGCTAGATTCTATGTTTGGTGATCTTTTTCTGAAC TTGTTTTTCTTTCATCATAAACTTCACTATGGAAAAATTTGACGTGTCAT TGGCTTAGGGGTCACCTAAAATATTTGGAAACCAGGGTTACCTAAATCTT AGGGGTCACCTGAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCAT GTTTGATGACCTTGACACATGGGCCTGGTTATTCAAAAGTCGATTACTGT AGATTAAATCACGATTGGCGCTAATCGCCATGGGATCAACTTCTCCTGTT CGAACGTCAGATTAACTTAACATGTTTCCAAATATTTTCCAAATAGTTTC CTTATCTTGACGTCACTTTACGAATGTTTCCAAAATATCCTGGGTGTCAG AGCAGGATTAAAATTTAACTTTTTAATTAGGGTTTTAATCAAGATTTAAA CCTAATTTTTTCAACTGCTGACGATCAGCACTAATCAATTTTGAGCAACT GGGCCCTGGACTTTGGTCACCTTTGATGGAATGAAGGTTTCAAGAAAGTC TTTAAATAGGCAACGGCCCCCGAGGAGATGAAGGCAGAAATTTTCAATCA TTTCACAGACTTTTTTTCTGATTTTTGTATATATCTTATATAGTGTACAA GAAAAAACAAAATTTGAATTATAGAACTTCAAGTTTCATCTTTTATGAAT CGTCAGCTATCAAATAGCTGATAGCTGACGATTCGTAAAAGATGAAACTT GAAGTTCTATAATTCAAATTTTGTTTTTTCTTGTACACTGTATGAAGCTC TGGTCCTGATCGTTGAGCGAGCACTCTTTGATGGAATCGTCTATCACTTA TTGATATTGATATATCTTATATATACTTGAATCTTCATGATGTTTGATCG TCTAAGATATCAAGCTAAATGGTTCTGGAAGTAGAGGTTAATGATGTGGA CGCAAATAAAGCTTGAAAAAGGATGGAGAGGTACTTACTTTTAGAAGTTT TTTGTCCGCCATTTTATTTTATTTCTTTTGCGGACCATGTGGAGCCATTT GTAAACACGCGTCGATGAGAGACCGTCCTATCCGGGTTTTTTTTTTAACC TGAATAAACTCCGGATGATCTGATAAACGGAAATGTCCTTGAGGCCATTC AATTAAGTGGCTCCCTCCCGTGAGTTTGTGGGAGGGGGTAGTAGGTAGGG TAAGTAGGGGTATATAGTATGTCTGGTATGTGAGGGGTATGTTCAAAGGC CAAAGTTCGAAAATCGAAAATTTCCCACTTTGATTGAGCCAACATGTTCA AGGGAATTTACATATGATTTGTATAAAGCCATGGACCCTTTTCTAACCAC TTTAGGTTCCCGGGGGGTACTAGGGTTGCTAGCTGACAGGGGGTACCACC CGACTTTCGAACTTTGGACCCTTACCGGGACTAAAAAGGAGGAAACGAAG GAAAATTTTGGCAATTTTACGACCCTTAGCGGGACAAATTTGACCAATTT TGACCAAATTTCAATCTTTCTCAGGGGGTAAAAAGTTAGCGGGACAGTCC AAATAAGGTACCCTTAAGGGCGGCACATACCGTACCCTACATTTGCCTAA GTACCCCCCCCCCTGGGTTTAGCCTACGCCTTGATAGCTTTTTTAAGTGC CACATTTCGTGTGCTGTCCAAAAATCACGAAAATTACATTTTTACTTTAG CGAATTTAACGAAGGTTTTTTCGTGAAATTTATGCAAGGTAGATAAAGAT GAAATTTTTAAAGAAAAATTGCCTTAAAGCTGATTAATATTCCATGCTTG AATCCTAATTTCAAATAACTCTTTATTATTTAATAAAGGCAAAAGAAATA TGTTGGATTCGGAAAAATCCTATTCATCACAATCTCACAGTTTCATTGAT AGATTTCAATTTTAAAGATTTTTGCCGAAAGTTATAGATGAGATTTAAAT CAATTCTTGTAACATCTTCAGAAATTGATTTGTGAGTTTTTAACGTTAAC TTTTGACAAACTTTCGCAAAAGAGCGAAAATAAATCGCGAAAAATTGCGC AAAAGTTTTCTGTAGTGAATGTCTGTACCAGAGAAGCAGATCAGAGAGAG ACTTGCATAATATTTGAGATAATTTGCAGGAAATGGCAGAGAATTTGTAA TGAAAATTACCGAGGGAGGGACTTAGGCAAAAATGGGTGCTGGGTATATG TGGACAATAAAGGTCGGTTTTTCGCCTTGTAAAGTCTCGAAGGGCTACAA ATTTTGGAAAGTATCAAAGTAGTCTCTCTAAGGTTGGAAAATCGAAGAAA GTTTTTCAAAAATGACCACTTCTTCGCAAAAACTAGTCTCCATAAGGTAC GATATTGAAAGGTCCCACACATAACCGTCATCTGCCAATAACAGTACCCC CCCCCTTTATAAATTTCGTATAAAAGTTAGCACAAAAAAAAAGCTGTATG AAAATTTGCCTAAGAGAAAATAAACTCGCTAAGCCTTTGGCAAATATTTT TGAAATTCAAAACCTTGTGGGATGCATGATTTTTACAAACTTGTAGCATG AAAAATCCCATCTGACAAAAGTAATTGAACAGGCTCTTGAAAGGCTGGCA AAAGTCAAAGAACGGAGAAAGTAACTTCAAAAAGCACTAGAGATTATTGG CAATAATATTGTTTGAAATTAGCAATCTAGTTGAAAGGAGGAGTCATTCA GGTCTTTACTAGAAATTAGCTACAACAAGACAATAAAATAGAATTGCATA AGTATTGCACATGAAATTTCAGTATTAACGTCAAAGCGAGGTTGAAATTT TATTGGTTACAAGTCTTTTTAATACCGTTTTTTTTTTTGTGTGTTCTCAA AAGTTTCATGAATGGAAATACTGACAGTGCTAACGATGTACTTGATGCAT TTATTCATTCATATGAAACCAAAACGTCAAGAGCTTGTTAATATGTTATT ACATACGTATATAGACAAATCCTAAAAAGGAAATTTCATTTACGGTTTTT AAGGTCAATTTAGTAAAAGACCTTTTTCATTGTCAATGATGTTTTCGTTT TGACATTTAATATCCTTTATTTGCGTTTTGTTGATACTTGATATGTGGAT TGTGGAATGAATTCAACTATTCCTTTTTTGTACGAATGATACCAAGGGGT CGAAAGTTTAAGTGGGAGAGTATTGTTTTATACTTTATGTCCATGTATAG AATTGTGTGCTCTCCTTCTTCTTGCTTTGAACAATACAGTTTGCATCGTA AGAAGGTGGTTTTTAAAGGAGGGTTTGATTTTTTGAAACGTAATCACTTT ATGTTGAAATAGTATGGTATTTCAAGTGCACAAGTTTCATAAGGACGCCA TAAAGTCTGTTTGTTGCCTTATTAGTTAGAGTCTAGTGGAAAGAGATCAT TGATATTAAAAGATGTTATTAAATAAAACTCCACTCTCGCTTTTTTAGAT TTTTATATCCAGAGCTTGCAAAGTTGAGCTTCGTCGTTCATTTAGATATC AATTCGAATTTTTCTTACATGAAGACATTATTTTGATAGACTTTTGTTTT TCCTAGCTTGTTCATTTGCACTTTTTAGCTTAGTTTCTAATACTTTCTTG CTCTCGTTTCAGTTATTTCGCAAAATGGAAAGAACCAACTCAGTCATAAG TGATACCTTACCTGTCGTCACAGAAGAATCGTACTATCCAGATGGTGCTG ACGCTTTCGGTGACAGCGTTGAGCCACCTGCAGGGGACATGGGTAACGAA TCGATCAATACAAATTACGCTTTAGTCGAAAGTGGGAAATCATCCAAATA TGGAGCCGCCAAGAAGCGCCGCAGCTTCCTTCACTCGAAACAATTCCGAA GTTTCAGATCTGCATCGCTGAGCGTTTCCATGCTTGAGAAACCGTCTGAT GATCGTAAAGCGCATGCATTTTTGGCAGGTTGGAACGTCAGTAATTTGAT CCAAGGAACCGGAATCTTGGGCGTTCCATATGCAGTCCAACAGGGTGGAT GGGCGGCCGTGGCAATGATCTTCATTGTCGCAATCTTGTGTTGCCATACT GGTAAACTCCTTATTGAATGCATGTATGAGAAATCAAAAAAGACTGGAAT CAAGCGACGCCTTAGAGTCAATTACCCTGAAGTGGCCGAAGCAGTGATGG GCCGTAAAGGACTAGTTATTCTTGGAATCATCCAATCAGTGGAGATGTTC GGTGGAGTTATCATGTATGTGGTTCTTCTTGGTACCGTCTGGGCAGACAT GTTTCAAAAATATACAGGACTAGGTATGAAAGAATGGGCAGCTCTTAATT GTTGCATCAGCTTGCCAACACTGTTTATCACTAAGATGTCTATCGTCTCT TGGTTATCCATGTTATCTGTCTTCTCATTGATGTCAGCCCTGGTGACTCT CATCGCGTTTTGTTTCACTCAAATCTCTGTATGGTCGTTGGTCAATGTTC CACCATTTGATCCACAAACCTTCCCCGTTGGCTTTGGTATTATTGTGTTC TCATATTGTGCTCATGCCGTCTTTCCAAGTATTGAAGGATCTATGAGAAA ACCAGAACAGTTTAACGGTATGATGAACTCGTCTTTCCTGCTAGCCGCTA TCGTCAAAGGTGCTCTCGGTACATTCATGGTTCTAACCTTTGGAAATCTA ACAGAGGAAGTTGCTACAGTCAATCTAGCTGCTTATCCAATCTGGAGTAA AGTGGCAACCTTCCTAGTCATCGGTAACGTACTTTTGGCTATCCCCTTGG GAATGTTCGTCGTCAGTTTAACTTTCGATGATGCCTTTCTAACCTACTTC CCTCACTTGAATCGTGACTCTAAA

Coding sequence (CDS) from alignment at sc0000353_pilon:227315..234188-

>XLOC_011862 ID=XLOC_011862|Name=XLOC_011862|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2484bp|location=Sequence derived from alignment at sc0000353_pilon:227315..234188- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCCGAAGAAAAGAAATTCTTTAGAAGGATGGCCGAAGAAAAGAAATT
CTTTAGAAGGTTATTTCGCAAAATGGAAAGAACCAACTCAGTCATAAGTG
ATACCTTACCTGTCGTCACAGAAGAATCGTACTATCCAGATGGTGCTGAC
GCTTTCGGTGACAGCGTTGAGCCACCTGCAGGGGACATGGGTAACGAATC
GATCAATACAAATTACGCTTTAGTCGAAAGTGGGAAATCATCCAAATATG
GAGCCGCCAAGAAGCGCCGCAGCTTCCTTCACTCGAAACAATTCCGAAGT
TTCAGATCTGCATCGCTGAGCGTTTCCATGCTTGAGAAACCGTCTGATGA
TCGTAAAGCGCATGCATTTTTGGCAGGTTGGAACGTCAGTAATTTGATCC
AAGGAACCGGAATCTTGGGCGTTCCATATGCAGTCCAACAGGGTGGATGG
GCGGCCGTGGCAATGATCTTCATTGTCGCAATCTTGTGTTGCCATACTGG
TAAACTCCTTATTGAATGCATGTATGAGAAATCAAAAAAGACTGGAATCA
AGCGACGCCTTAGAGTCAATTACCCTGAAGTGGCCGAAGCAGTGATGGGC
CGTAAAGGACTAGTTATTCTTGGAATCATCCAATCAGTGGAGATGTTCGG
TGGAGTTATCATGTATGTGGTTCTTCTTGGTACCGTCTGGGCAGACATGT
TTCAAAAATATACAGGACTAGGTATGAAAGAATGGGCAGCTCTTAATTGT
TGCATCAGCTTGCCAACACTGTTTATCACTAAGATGTCTATCGTCTCTTG
GTTATCCATGTTATCTGTCTTCTCATTGATGTCAGCCCTGGTGACTCTCA
TCGCGTTTTGTTTCACTCAAATCTCTGTATGGTCGTTGGTCAATGTTCCA
CCATTTGATCCACAAACCTTCCCCGTTGGCTTTGGTATTATTGTGTTCTC
ATATTGTGCTCATGCCGTCTTTCCAAGTATTGAAGGATCTATGAGAAAAC
CAGAACAGTTTAACGGTATGATGAACTCGTCTTTCCTGCTAGCCGCTATC
GTCAAAGGTGCTCTCGGTACATTCATGGTTCTAACCTTTGGAAATCTAAC
AGAGGAAGTTGCTACAGTCAATCTAGCTGCTTATCCAATCTGGAGTAAAG
TGGCAACCTTCCTAGTCATCGGTAACGTACTTTTGGCTATCCCCTTGGGA
ATGTTCGTCGTCAGTTTAACTTTCGATGATGCCTTTCTAACCTACTTCCC
TCACTTGAATCGTGACTCTAAATTATTTCGCAAAATGGAAAGAACCAACT
CAGTCATAAGTGATACCTTACCTGTCGTCACAGAAGAATCGTACTATCCA
GATGGTGCTGACGCTTTCGGTGACAGCGTTGAGCCACCTGCAGGGGACAT
GGGTAACGAATCGATCAATACAAATTACGCTTTAGTCGAAAGTGGGAAAT
CATCCAAATATGGAGCCGCCAAGAAGCGCCGCAGCTTCCTTCACTCGAAA
CAATTCCGAAGTTTCAGATCTGCATCGCTGAGCGTTTCCATGCTTGAGAA
ACCGTCTGATGATCGTAAAGCGCATGCATTTTTGGCAGGTTGGAACGTCA
GTAATTTGATCCAAGGAACCGGAATCTTGGGCGTTCCATATGCAGTCCAA
CAGGGTGGATGGGCGGCCGTGGCAATGATCTTCATTGTCGCAATCTTGTG
TTGCCATACTGGTAAACTCCTTATTGAATGCATGTATGAGAAATCAAAAA
AGACTGGAATCAAGCGACGCCTTAGAGTCAATTACCCTGAAGTGGCCGAA
GCAGTGATGGGCCGTAAAGGACTAGTTATTCTTGGAATCATCCAATCAGT
GGAGATGTTCGGTGGAGTTATCATGTATGTGGTTCTTCTTGGTACCGTCT
GGGCAGACATGTTTCAAAAATATACAGGACTAGGTATGAAAGAATGGGCA
GCTCTTAATTGTTGCATCAGCTTGCCAACACTGTTTATCACTAAGATGTC
TATCGTCTCTTGGTTATCCATGTTATCTGTCTTCTCATTGATGTCAGCCC
TGGTGACTCTCATCGCGTTTTGTTTCACTCAAATCTCTGTATGGTCGTTG
GTCAATGTTCCACCATTTGATCCACAAACCTTCCCCGTTGGCTTTGGTAT
TATTGTGTTCTCATATTGTGCTCATGCCGTCTTTCCAAGTATTGAAGGAT
CTATGAGAAAACCAGAACAGTTTAACGGTATGATGAACTCGTCTTTCCTG
CTAGCCGCTATCGTCAAAGGTGCTCTCGGTACATTCATGGTTCTAACCTT
TGGAAATCTAACAGAGGAAGTTGCTACAGTCAATCTAGCTGCTTATCCAA
TCTGGAGTAAAGTGGCAACCTTCCTAGTCATCGGTAACGTACTTTTGGCT
ATCCCCTTGGGAATGTTCGTCGTCAGTTTAACTTTCGATGATGCCTTTCT
AACCTACTTCCCTCACTTGAATCGTGACTCTAAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_011862XLOC_011862-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000353_pilongenomesc0000353_pilon:227315..234188 -
Properties
Property NameValue
Aaloc31-1242:1213
Aaloc1-30:6875