XLOC_011493 (mRNA) -

Overview
NameXLOC_011493
Unique NameXLOC_011493
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000159_pilon:301632..308597+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011493 ID=XLOC_011493|Name=XLOC_011493|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6966bp|location=Sequence derived from alignment at sc0000159_pilon:301632..308597+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCAAAACAGCGGATGTTTCCAGTGGAAGTTGTTGAGAAGAATTTT ACCGTTAGAATTACAATTTGGATTAAAATGTGGCTCATGTACTGCCATTA CTTTATTAAGAAGTCTGGTGTCTTGCCTACAAACCTTTGATGATCACGAG GATGTTGCTGTCTTCCGATTCAATGATGACAAAGTTGACGTAACACTAGA tgacactgggcgaaataatgtCTTTCAAATCGTCGGAAAGATGTAGGAAG GTCACATTTCCACACCTTTCGACAGAGTTgaaagttggtctttcaacaaa aattggaaagatgtgCACCTTACCTTTCAACATCTTTCGACCAGATCATC TTCccatctttccaaaaaagttgaaagacgaccttctcaaactttcaaac aggctgggaaaatgaaattcccaacttcctaatatgttgaaatttcatat tctgaCATCTTTCGACAGGTTTTaaagttggtctttcaacaaGGATTGGG AAGTTGTGCACCTTACCTTCCAACATCTTTCGACCAGATCGTCTTCccaa ctttccaaaaaagttgaaagaccacattctcaaactttcaaacaggcttg aaaaattaaattcctaacttcctaatatgttgaaatttcatattccgaaa ctttctaaatactttagaagatgatttttgcttttttcgaaatctttcat taacaagtcttcaaaagtaaatgagagatcttttaaataatttgtgTTTA TGTGCGGATATATTTTTTCTGTGACATTAAAACGAAAAATTCATATATTT ACAAAGCatagaaaacagaaaatatgaaacaaaatagtacGGTAGTGAtg actttttgctaaaaaattaagtagtctaaataaaataattctgaatgaca aattacacgttttgtataagaacaattttattagaacacgaggctgaaat ttggccaaaacctaaaaacaattaagaacaatctgagcctcagctttcag aaattattaaaacactaatttcaacagattttaactgatttttaagtaaa gaaactaagcggctaagaacatcataagaacatttaagcctgaaaaattg caaaaattaataaCAGCCCGGCCTGAGCaagaatttactggttcttataa aaaatgcgtgtaatttctatgatttaatttcattttcaataatataATAA CTAATCTAAATTATAAGTTTTTAGAATCTTAGTCCCTATCAAGGAATAGA TTGGCCATAGGGCTTCAAAGGACATTAAAGGATACATTGAAATTTCTATT CCCGTAAGTGCGAAATCCTCGTTAAATACTTTGGGAATGCTTTCTACAAT GGAGATCAATTCTACTAAATTAtagacatttttataagcatactgctAAC AAGCAAATCCAGACTGATCTCTTGGAAAAATTTAACATTGCCTATAAAGC ATATGCTGAGCCTCAGttaacaaagtttcaaataatttaatctcataaat cacaaaaaaaaaacaagcataaTGTGTAAATTGCACTATTTAAAATAACC TTATACATAATaagtataaaataaaattgtgtGATCCCTTTGCGAgtttg agagagagagagagcaaaCTTTCAATGTTTGGGAAACTGGAATTGATTAC TCACATCGTCGTCAAAACGGTTCAACTTATataccgggtgtttcaaaact atttctAATTAATaatatttactacttgtaagggttgatgcaaaaaggcc cttttcgccgccggactaaatatgtttttgataattaaaaCAAGACTCTC GAATCCGAGTGGTAAGTCAAAATtcctagaaaaaagtcaaaaagtttctt gaatgggcggatggtGGAACAAAATTATGGGCGGTGGGGTTTTAGGGAAG ATTTGGGCGTCTGAGGGTATTAGCCggtattataaatataaaaactaatg aagtaaaaatataaaaatattgtataataaattaaaaaattatgcaaatc actctaaaaaGATGACACTATGAATAATGAAAGCTATCCCAAATAAACTC TTTTGTGCACAATTATAGGGGAGGGTAGAAAAACCATAAAGTACAAGTCA TTATTAAAAACTGATattaagatgattttcccaaaatgcCCTAGTCTGAA TAAACGTCCCACctactttgtaattttttttaaaaaattgtggacatttt gacaaaattaatttcagggGTAAACCAAAAGTCtctccattttctcaatt taacatattctgggatatttttgaatgcttttgaagaatattttcaaacc ttAAACACATTATCCAACGAAAAATCTACACAGTAAAAGAAGCATAAATC TGAACCAGACAGAAAATTTTTAACTCCACCTTGTTATTCAGACCCccact tttattagattttgcaatattttatcataatttataaTATACTTGGGACC TAAAGTAGtcgaaaatgaaggtttttaagCCCTTTTCAGAAAAGAATCAT AAAATTATATTACGgtgatattttccaaaattatgaCCCACAATCTCACT CCAGTCCTCTGTTTAGTTGTTCACTTATTAGACTGAGGTTATTGTGCTAT ACAACACGTGATGGTACAGTATTGTCAATCCCTTGAAGATGGTACAGATT GACTCTTACAATTAAGCATTAAAGAGTACAAGAATACCTTCTATCATTCA GCAACCAATTATTGCAATGAAAATATTACCAAGTTATTATTTTCGAAGTT GAAACGAACTACCACATGAAGCATATAAATATCTTGATTGCATGGCAGGA gcatacatttttgttttgcagcATCGTTTTTCAAGTGCATTTCAAAATCA GCCAGTAACTGTCCTTACGTCATGACCCTaataaaacaaatagaaattga atCAGTATTGAAATCCAGGCATACAAAATGGTGTATAACTAAAAGAGGTT TGTAAAATTGTTGATAAGTTATTTACAGCTTTCAATAGACTATTAGTAGA AAGACCCTTTAGTAAGACAAATTATTCAGATTGTTTCTATTTCTGAAGAG TTCtaaaaaaggttacaaaaacctattttcaaaaatattttgaacttagg TCAAGACTGTGTGTACTgtaacaaaattttagcttctttTGATGTACAAT GGAATAGTATCATCAATAGTCTTGTATTACTGGattatattacaaaaaat acttaccgtgttgtattttgttccttgttcaatggataaaatgaatctat tttcaatgaaatcccCAAAACTTCAATGGCTCAATGTCGACACACATTCA ATGTATCCTATAAACAtgaaagttttatgaaaatttgacaCACTGTAAAG CTTGCCACCTcagagtttaaaaagtaatttctctgttctacacatttttt ataagcagcaATCAGGCTGCTAAGGCTTGAGGCCTCAAATTTGTCAATTA TTTTCCACTATCTTGAAAAGTGACAGCTGTTTTAGATGATCTAACCATGG CCAACTATAGCCCTTTGACCCAATacacataaatatggtataatattagg ggtattcaaagcaattttttcagaaaatggacCAGAATGCTaagaaaatt ggagttgcttattaaaaaatgtgcatttaatcatgtcatctttttcagtt ccatagcaaaaacaaaaacgtcaacatttctttgtttttagactAAAAAT GTCTAAAAGGCCTACCTTCAGCTatgttatcatttgatattcCACGTTAA GTTTAatttaacataattttttacttcaaccatgttatgacaaaataagt attttccaaaataaaatgatcTGACAGCTTGCATTCCAACCAACCAACTT TTATCTCCTGAAAATGGAAAGACAactagttaaaaaaaaagtgaccAGCT TTGGTCCAGGGGgatcaagcagttagtacaagacatcatacCAGTTGGTA CCTGGTGGTGTGTTATGTGAATTTGATTTCcttacaaaaatcttaaaatc ggtTTGCGGGTTGTCAGAGAAATTtattatctaaaatattttctaaaatg ttgtaaTCTCctattgaaagatgaaaaaattcaaaggttCTAAAGGGTCC AGATATTATTTTATCTGATTATATTCTTTTTATCTGTCACTGTAACGGTC GAAAACCTACTTTCAAGGAAAGTACTACTGTAAGtgtataccgtgagtgg tcctaaatttgACAGCCTTGCTTAATTCCAACCCCCCAAATAACgggtat gaaaaaaattctatgtttgcTTCAGATGCATCCGCGGTATATctatattg ttttcattttagtttgttTCTTTGAAAGACCACGTCGAATTTAGGACCAC TCGTGGTATGTGTGATGATGTTACCAGCTTCTTACGAAAAGGCATTTAGA TGACATGTCTTGTACTAGCTGCTTGGACCCCTACTTGGTTGATTTTGAAG AAGaattcctgtatatacattACACATTATAATAGATAAAAAATTGGTAT TAAAACGTCcttggtggaaaacttttgaaaaggaggctttcACCTAGGGG GTGGGGCACTGATCTAGACAGCCGACAGGGATGTGCCTTTGGAGTTTGAA GAGTgtccctgtcagatatgaattttcggcaaaattgGGACTCTGtcaga acaaaaaattgaaaatttttcccattttcaccctgaaaagtggcaaaaat taataaaagtagatgaaaaattaaaagattttctgatttccaccctgaag attgtccaaaataatcaaaaatctaaatttttgggAACCTGtcatatacc gtgagattgggcaacttgcatcagtggaggctaacatgcaacATGCATAG CTCTCGAATGATTGACCTGGctggttggtcattaaaatacaacattaaat caaaacaaaaatggtagagtactACTActagcagagctgcgtagttcatt tgttttgaaatttttctgatttaatTGGTCAGCTGTCTGATGGCTATGGA GCCTAAAAATGGGGCCCTGTCACCAGCAGTGAAacatacccaattttgcc taagtgcctCcccCCTGGGAGGCTAATAccctgaagtttttcaaaagtaa attgttgtGGAAAATCCACTTCGTCCACTGGGGGTTAACAGACTATAGCT TGAACTGCccatagctttgaaaagctgtgGTGTAGCCATATGTGTCTGTA TAGTCATGTCATACAGACACATACCACACTTTTTGTGTCCAGACTGGCAC TGGACACAAAAAGTATGACTGATAattagaaatatataaaaaggagCTCA CCTTAGCATCTTTTGATTCCCATTTCATATCTTTAGAATAAAGTTTCCAT TTGCACTGTGCACTGCCTTCCTATATACACAGCTTCcagtttcaaaatta caaaaagaaattttgccggatcataaatcataacattcgaaaataatcta agttttttttccgggggtttgcaaCAGTACTTCCAATGATGTGGATATTA TATTTACAGTATTTAACAATAAACTGTGTATGTAAAACACTTAGAACTAT TtcattttacaagaaatttatatattttagtaTCTTCTTGTGTTTTAAAC GTCAAAAATTATGCTTCAAATAGTCTTTTTGATCCCCGGTAATCATCAGT GCGGACTTTGGTTCGTAAACGTTTTGGCGCGTCCTTCTTTCAGCAACATG GAAAAACcaagagaagttcatctttcgaGAAGTTGAAAGACGTCGAAATA CGAGCgtcgaaatttttgctttttttataagaagaaccaGAAAATTTTGG CTCAAGGCGCTCAAGGCTGGGCTGTCTGgactattcttaatttttcgagg tTTTTAGGCTTAAGTGTTCTTACGATTAGtttttttGCTTAAGAAAttaa aatggcttaaaatctattaaaacccattaaaatcagcaaactcgtgttct tttaaaattgttcctataaaaaagcgtgttttaaaaaaatattaattaaa cattaaacattaaacgtaaaagtgtaaaaGTTCGCCTTTCGAAAAGTTGG AAGACGTCGATATACGAGTTTtagacatctttttgaaaaattgaaagttt ctatttcaaaacatttgaaatacagagaagttcatctttcgaaaagttga aagacgtcgataaacgacttttcgacatctttttgaaaaattgaaagttc atatttcaaaacttttgaaatacagagaagttcatctttcgaaaagttga aagacatcgataaacgacttttcgacatctttttgaaaaattgaaagttc atatttcaaaacttttgaaatacagagaagttcatctttcgaaaagttga aagacgtcgataaacgacttttcgacatctttttgaaaaattgaaagttc atatttcaaaacttttgaaatacagagaagttcgtctttcgaaaaataga aagttgttagaagatgaattttcaacaaaattcaacaaacttGTAAGTTC GTCTTTccaaatcttggaaaaatagAGAAGTTCATCTTCCTAAAAGTCGA AAGACATCGAAAGATGAGCTTCcaatatctttcaacaaatttgaaacttc atctttcgaaaattttggaaatttgtcgAAAGTTGATCTTCTCAACATCT TTCGAAAATGGAAAGACAAGATTTCGCCCAGTGTGAGCAAAGCGCCGCAG ACGATGAAAGTAGATCGAACAATCATGATACTACAAGTGAGGCTGTTAGA GAATTCAACCTACATTTCCGGAAAGAAAGAGAGGTTAGTTCTCAGTCAAC AGATATCGAAGATTATGACGTGAACAATAATTGTGATCCCTCCATCAGCA GGAGAAAGGTCCTGACAATACCTAATATTATCGTTGAAGCTCGTGATGAA CCTGTAGACCAAAATGTTGATATTAATCCTAGACCTAACGATAAAAGTGA AGAAACAAGTCTTTAA

Coding sequence (CDS) from alignment at sc0000159_pilon:301632..308597+

>XLOC_011493 ID=XLOC_011493|Name=XLOC_011493|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000159_pilon:301632..308597+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATCAAAACAGCGGATGTTTCCAGTGGAAGTTGTTGAGAAGAATTTT
ACCGTTAGAATTACAATTTGGATTAAAATGTGGCTCATGTACTGCCATTA
CTTTATTAAGAAGTCTGGTGTCTTGCCTACAAACCTTTGATGATCACGAG
GATGTTGCTGTCTTCCGATTCAATGATGACAAAGTTGACGTAACACTAGA
tATGTATCAAAACAGCGGATGTTTCCAGTGGAAGTTGTTGAGAAGAATTT
TACCGTTAGAATTACAATTTGGATTAAAATGTGGCTCATGTACTGCCATT
ACTTTATTAAGAAGTCTGGTGTCTTGCCTACAAACCTTTGATGATCACGA
GGATGTTGCTGTCTTCCGATTCAATGATGACAAAGTTGACGTAACACTAG
AtGAGCAAAGCGCCGCAGACGATGAAAGTAGATCGAACAATCATGATACT
ACAAGTGAGGCTGTTAGAGAATTCAACCTACATTTCCGGAAAGAAAGAGA
GGTTAGTTCTCAGTCAACAGATATCGAAGATTATGACGTGAACAATAATT
GTGATCCCTCCATCAGCAGGAGAAAGGTCCTGACAATACCTAATATTATC
GTTGAAGCTCGTGATGAACCTGTAGACCAAAATGTTGATATTAATCCTAG
ACCTAACGATAAAAGTGAAGAAACAAGTCTTTAAGAGCAAAGCGCCGCAG
ACGATGAAAGTAGATCGAACAATCATGATACTACAAGTGAGGCTGTTAGA
GAATTCAACCTACATTTCCGGAAAGAAAGAGAGGTTAGTTCTCAGTCAAC
AGATATCGAAGATTATGACGTGAACAATAATTGTGATCCCTCCATCAGCA
GGAGAAAGGTCCTGACAATACCTAATATTATCGTTGAAGCTCGTGATGAA
CCTGTAGACCAAAATGTTGATATTAATCCTAGACCTAACGATAAAAGTGA
AGAAACAAGTCTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_011493XLOC_011493-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000159_pilongenomesc0000159_pilon:301632..308597 +
Properties
Property NameValue
Aaloc202-483:6685
Aaloc1-201:1