|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000159_pilon:417467..421082+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_011474 ID=XLOC_011474|Name=XLOC_011474|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3616bp|location=Sequence derived from alignment at sc0000159_pilon:417467..421082+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAGAACCAATGACGTACGAGCAATATGCAAAGGACTACCCAGGAAA
CCATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGTAAAATCGCTTTCA
AAATATCCACTTCAAAGGTATTATATTTTCTTCAGAAGCTTTGAAACCCT
GTTCGAATTATTTTGTTAGGGTTGGGTCTCCAAAATTTTGACTTCATAAG
AGGTAAATATTGATTGACTTTGAGTCATTTTAGCGCTCTTTTAGATGAGC
AATAAAGGttttgggtgatttttaggggcatgcttttaatatttttgtct
ttaaaaatttttacatcTTATTGCGCTTGTAATTTCTGATTTAGTTCTAT
TTATTATTTTCTAGCTGTTCGATTCGTTTATTTTACTTGCCATCGTTGTG
AACTGTATTATGATGGCAATGAGTGCTCCACTACCACTCAACGATACAAA
TGAGCTGAACAATAGTATAGTAAGTCTATGTTTTAAATATCCCCTTTATT
GTGTTGTGCCTCATCAAACCGTCTGGCTGGGTGCACTCCTTACGGGTTTA
AAGCAATTCAAAGACACAATTAATTTCTACTTTGAACTTCCTCGTGTTAA
CAGACCCTATAACTTTTCATTAGGCCTAGATTGAGTAGCTAGGTTCATCT
TTTAAGCCTCCCTTTCGTATTAACCACCTCATCACCACCGTTTAGACCTT
ACCATCACCCAAAAGAGGTTATCTCTAGATCTAACATTTCTGTAtatgta
taccgagtttatcgttctacatcagcaatttgagctttacgaAGCTCGTT
TGACATTCTACCGATTCGTAtttgtgaaggtttcgatcacagacttgcac
cgccatggactgtgttcgaatcccaagcacttccaggcagggtgttaggg
aaatatggtgatagattCTCTACCTTTACTCACAtttctttatgttttta
atCCTTTCAGGAAGCTTTGGAGGTCTATTTGCTGGCCATTTTCATAGGAG
AAGCTTGCGTCAAAATGCTAACTCAAGGTTTCATTTTACATGCTGGTTCG
TACATTCGAAACGGATGGAACTTGCTGGATTTCACTGTCGTTGTTACAGG
GTAAATGCTTTTATAAACAgcatgtcccgaaaaaagcggacaaattttta
tataaagtaaaatcctcataataTAATTTATGCCGATTTTTATGACTTAC
ATACTAAATATCTCAATCGCAAAAACCTGTTCAATCATTTCTGGGATact
gaatatctattgattgaactgTAATCctatttcaattattctaatTCAAG
TTtaatgagttttgaggattttacatttgtccactttttttttgagacaC
ACAGTACAACGGAAATGTTCAAATACATGATCTAGGTGGTTTGATTATAT
CTAAAATGAGCCTTGTTTTTCTTTACAACTATACATGCTTTTCTCTTTGT
AAGAACGCATAAAGCTAAATTTTAGCAACGACCTAAGAGCAAATTATAAG
ACCAATCCAAACAATACAAGCCTTATAGATTTTGTAAACGGTTTAGTAGA
GAATGCTGATTTGTAGCCCCTAGCAAGTCAATAAAGAAATCATAAACCGT
GTACTATTCCAAAGCAAGAATATCGATGTCTTGATTTCCGAAAGGTCCTA
CCCGATGAATAAAAGAACACActctaaaatctaaaaaataccCACATCTT
TGATAAGACAAAACGCTTAATATAAAGCTCTTATCTTGCCGTTACTATAA
TTATGTTATCATAATTCTCTTATAGTATTTTGGGTTTACCGTCGGTTGGA
ATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTAGAGTGTT
ACGTCCATTGAAACTTGTTTCTGGTGTACCAAGTGAGTTTTCTAAAGAAA
TCATCAGATTGTTTGAGATCCTGTTGATAGTACAACAAGCCAGttttttt
tCGAGTGTGAAAACATGCTATGTTCTTAACGACGCtcttaaattttgaga
tcaATTAAATCATCAAAGAATTGTTACCTGGACTgattaagatgttctta
ttttttagtaagatttcagcctaaatgttcttataaattggGTTCCAATA
CGTGAATTCTCATTTTTACATTTCAGGTTTACAAATTGTTATGAGTGCCA
TCATCAAATCTATGGCCTCACTTTTACAAATTTCTCTACTCATTGGTTTT
GTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTCTACCCGGAAAATT
CCATTACACATGTTTCAAGAATGCAACTGAACCGTTTCCTCAAGAATGTA
AGTTGTTTGTTGTAGGTTTGTTTGTTAGCTtgtaagaacaagttaagaac
ctTCAGAACGTAGggtggaaaaaatctttttagaaaatgcTGAATTTTTA
AATCCTGATTCGTTTAAGATAAACAATCGACTACTATTATTATCAACTCG
AGCTAAAATAGAAAGCTACATTTTTATAATTCTGGCCTCTGGATCTTAAT
TTTAAACGCAGATAGCTTGAAAACATTATAAGAGGGTTTCGCTTCTTAAA
AACCACAATATTATGTACACAATTAGAACGGCGCATGCAACTAGCCTTCC
TAACCTTCTTTcgaattttgagtttttttaccTACAGAAGCACACTCCCC
TCCCCATTCGTGTGACGTAATATAATTCCAGAACGGCGTTTTTTACCATC
TATCACCAAAGATTTGAAATTCGACCTcaagaaaagaaagttttgacaGT
ACTATAcggaataaaaatgaaacataaaaaagagATATTTGTATAAGTTA
ACTTGAATAATCGTCCTGAATTTAATGTTAGTACCTACGTACAATAGTTT
CAAGAATAAACAATTTCCTTTTTAGATCAAATAGAAGCTGGTCGACTATG
TTCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATGTAAAA
GATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATATTTTC
AGTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGGACAGA
TACTATGTATTGGGTGAGATCGCTTTCTTTATCATTCTTATAAGTATTGA
TGACTAAGAACTTGTCAAATAGAACAAAAATAAGTCCGAAAAAAGACATC
TTGGCTCCTTGATACTCAGATATAGACACAATGCAATACATAGAAGCGCC
AAAACAGGGTCTTAGAACACACTTACAAAGATAAGTTTATTTAAGGGATG
TTAATTTCATGGTTTCGTCTGCCGCCGCAACATAATGATGATGGtttttt
ttGGGAAGGCGCTAATTTCCCCCTTGCCGGTTGCCATTTTTTATAAACAG
TCCAATCTCCTCTTAGAAACAATGTTTACGCTTCTGCAACCCTGGGCTAA
GAAAATTGCTAATATTAATGTGAAATTATTTCGTGCTTCAAAGCCGAGCT
GTTTCCTGATCTTGTAAAAGTGGGGGTTAGTTAATAGGTGTATTCTTTTT
CTTCGCAGACGATGGATGTTATGGATTATGATGGATATTATATGTTTTCG
ATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAATTTAGT
CTGTGGTGTCCTCAGC Coding sequence (CDS) from alignment at sc0000159_pilon:417467..421082+ >XLOC_011474 ID=XLOC_011474|Name=XLOC_011474|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1872bp|location=Sequence derived from alignment at sc0000159_pilon:417467..421082+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAGAACCAATGACGTACGAGCAATATGCAAAGGACTACCCAGGAAA
CCATTTCCTTGTCCTTGGTCCAACAAACCCTGTCCGTAAAATCGCTTTCA
AAATATCCACTTCAAAGATGACAGAACCAATGACGTACGAGCAATATGCA
AAGGACTACCCAGGAAACCATTTCCTTGTCCTTGGTCCAACAAACCCTGT
CCGTAAAATCGCTTTCAAAATATCCACTTCAAAGCTGTTCGATTCGTTTA
TTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTGCTCCA
CTACCACTCAACGATACAAATGAGCTGAACAATAGTATACTGTTCGATTC
GTTTATTTTACTTGCCATCGTTGTGAACTGTATTATGATGGCAATGAGTG
CTCCACTACCACTCAACGATACAAATGAGCTGAACAATAGTATAGAAGCT
TTGGAGGTCTATTTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAAT
GCTAACTCAAGGTTTCATTTTACATGCTGGTTCGTACATTCGAAACGGAT
GGAACTTGCTGGATTTCACTGTCGTTGTTACAGGGAAGCTTTGGAGGTCT
ATTTGCTGGCCATTTTCATAGGAGAAGCTTGCGTCAAAATGCTAACTCAA
GGTTTCATTTTACATGCTGGTTCGTACATTCGAAACGGATGGAACTTGCT
GGATTTCACTGTCGTTGTTACAGGTATTTTGGGTTTACCGTCGGTTGGAA
TGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTAGAGTGTTA
CGTCCATTGAAACTTGTTTCTGGTGTACCAATATTTTGGGTTTACCGTCG
GTTGGAATGGGTGAAAATGCGGGACCAATGAAAGTCATCAAAGCTGCTAG
AGTGTTACGTCCATTGAAACTTGTTTCTGGTGTACCAAGTTTACAAATTG
TTATGAGTGCCATCATCAAATCTATGGCCTCACTTTTACAAATTTCTCTA
CTCATTGGTTTTGTAATTGTTATTTTCGCCATCATTTTCTTGTCTTTTCT
ACCCGGAAAATTCCATTACACATGTTTCAAGAATGCAACTGAACCGTTTC
CTCAAGAATGTTTACAAATTGTTATGAGTGCCATCATCAAATCTATGGCC
TCACTTTTACAAATTTCTCTACTCATTGGTTTTGTAATTGTTATTTTCGC
CATCATTTTCTTGTCTTTTCTACCCGGAAAATTCCATTACACATGTTTCA
AGAATGCAACTGAACCGTTTCCTCAAGAATATCAAATAGAAGCTGGTCGA
CTATGTTCCGAGGGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATG
TAAAAGATACTGGGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATA
TTTTCAGTGCATGTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGG
ACAGATACTATGTATTGGATCAAATAGAAGCTGGTCGACTATGTTCCGAG
GGGAGCTCAGGACGTCCATGTCCCGAGGGAAGCATATGTAAAAGATACTG
GGATGGTCCTAATTTTGGTGTGACAAATTTCGATAATATTTTCAGTGCAT
GTCTGACTGTCTTTACGTGTATCACATGTGAAGGGTGGACAGATACTATG
TATTGGACGATGGATGTTATGGATTATGATGGATATTATATGTTTTCGAT
TTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAATTTAGTCT
GTGGTGTCCTCAGCACGATGGATGTTATGGATTATGATGGATATTATATG
TTTTCGATTTATTGGCTTTTGAATGTCATTGGTGCTCAATTCATGTTGAA
TTTAGTCTGTGGTGTCCTCAGC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000159_pilon | genome | sc0000159_pilon:417467..421082 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 829-936:3509 |
| Aaloc | 643-828:2878 |
| Aaloc | 472-639:2129 |
| Aaloc | 364-468:1777 |
| Aaloc | 223-360:961 |
| Aaloc | 118-222:365 |
| Aaloc | 1-117:1 |
|
