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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000493_pilon:26119..29719+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_011272 ID=XLOC_011272|Name=XLOC_011272|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3601bp|location=Sequence derived from alignment at sc0000493_pilon:26119..29719+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTACATATGATGAAGACAACTCCGTCAATAAAACTCGTATGCCCCGAAA
CTGTGATTTCTATAGAATGATAACCTTTGTACCCATATTTTTTACCATTA
TAGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGAT
TTGCGACAAGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACT
GTTAGCCAACGACTCGGTTACTTTCAAACGACATTTAAGGTAAGAACGtc
aactctctataattcgattctttattattttaatctttttttaattcgaa
ctaaaagatTGGTTCTCTCAAACCCGAAAGgttatgtaaaaataattttc
gtcatccgaatatttctataattcaaataaaacttttggTCACTTGAaca
tcgaattatagagagtcaaGACAAACAACAATTCTCATAGATTCACTTGT
TGTGACCTTGTTGTCCATTAGTTTGTTGGGGCTCAAATCTCCTATTTTCA
AACCATACTAATTGACAATTTTAGTATTCAACGTTACCCAGTTATTCCGT
TATCAACAAACTCGGGATTAATCGGATGGGTACCGCATTCCGATACTTTG
CACACGCTCATTCGAGACTATcgtgaaaagaaaaagattatgCTGAACAT
CGAACATCGAATCATGTTAAAGATGACGCCCGACTATGAACATTTGACGT
TGATTCAAAAAGTGGAGGTTTTCGAACATGCTTTGAACACAACACAGGGT
GATGATTTAGCGAAAGTGCTCTGGCTGAAGAGTCCCAGCTCTGAGGTAAG
TTGATTGTTTTAACAGTGATTGGATGATAATTATTTACTGATTCCATAAA
AGCTTCAGTTTCGGAAAATAGTCgtgtttgatttttgaattagttgtttc
aaatagttttcgaaaatcttttcgATCTGTAATTATGTTATTTCATTCTT
TTAATATTAACCTTTCAATAGGTTTGGTATGACCGCCGGTTAAATTACAC
GCGGTCGCTCGCTGTAATGTCAATGGTGGGTTACGTTCTTGGATTGGGTG
ACAGGTAAGCaacacaattttataaatatagTCTTCATAAATCGAACCTa
tataattcgaatgtctccttaactcgaacaagttttatggtcccttcagt
taacaatgccttataaattactccatatctaaaaatttcctcaactcgaa
caaatttgtgttccccgtgcgtgttcgagtaaTACGCGTTTCCCAAAGAA
AATCAGGGATGTATCGTATTCCTCTTACAGTCATCTAGGAGGAGTTGGGA
TCCCGAACGTTAACCCCTGACGCCTCATACATCATAACCATCACTCCTAT
CTTAcacttcttttgttttcatcagACATCCTTCGAATTTGATGTTGGAT
CGAATGTCTGGAAAGATTTTACATATCGATTTCGGTGATTGCTTCGaagt
gagaatttttttttccaaatatacttTTATATTGTATTTCTTCCTTAAAA
GTAttgttaaaagtattttttttgtcgtttaCTTTAAAATGTCTCATATG
AGCGAgcttatgtatttgcacttttgaagacagtaaagtgactgaagcga
tttggaacaacccgcacttttgacccgcaaaatggAGGACGATAAAAGTG
CTCATTTACCGTCGTCTTCAGTAAGACAAATAAACTCCGTCTCAGAAAAA
CaaacaTGtacataaactcggtattatatCGGTGAGAAAGAATCTTTGTG
TCAATTTATTACTTAATTTTACGATCTTTTTTGGACCTacctggaggtcc
tatAaattaacctttgtccgtccgttcgtccgtctgttaccagcttttct
tgagattggctcattagttttttctgattttcatctttagttttttccaa
tttttttgcaaaaagatgcgtatttgcaatgctcaaattttttttccggt
tgaaaatgccacaaatcgccgtttttgcagattttcattagattttttcc
ttgtatttctatgtttttgacacaaaaacattattgataacaatgctcac
catcaagtaTGATTCAATGGTcaataaaactaatttttgcaaccagaact
ttctatttatttttccctacaacccttccctctccccttaTCAACAATCA
TTGATGaattatgcattttcgctaaacgctatattttctgactgattttt
tttctcctcgcattgctatctaactttcatcatcaggtaggtccattcag
catctagcttgtttaatCTTCACTTTCACCATTTTTAGGTTGCAATGACG
AGAGAAAAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAATGCTGAC
GAACGCTATGGAGGTTTGTTTGTTTAACTTCATACGGGATATTACATAGT
TAGCCATACAGCAGCAATATCTTGGTAAACTTTAAAGACTAAAATGGCGA
ATTTCAGCAATACATTATTTATGCATCCTTCAAAGCTTGTAATGTTGGGA
ATGGCTTGAAATCCTTGTCCTTTATTAGCTATCGCAGCCAAAGATAAAGC
TATTGTTTTGAGACTTAAGTCTGAGCAAAGACATTTTATAAATAAGTGTT
ATTTCTAGATAAAAgaattgaaagtgaaaaattgatgtctTTCAGGTGAC
GGGTATTGACGGCAACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTT
TACGTGAAAACAAAGACAGTTTGATGGCCGTTCTCGAAGCTTTCGTTTAC
GATCCTTTATTGAACTGGCGCTTGATTGATAGTAAGTTGTTATTTTTGCT
ACTACCTATAGCTCTCACTAAGTTTAATTCCATTTAATACCCCTTGCCTA
TTTCATTACCTTGTGAATCAATCAACATCTATCGAATGAACAAAGGATTC
TGTTTCAAGTAAGATAACGAGTCTTGGGGATTTTTCTTTATACAATAGGT
ATAAAGCAAAGTAAATAGGTCCCACACTGCAAACAGTGTCAATGGTCACT
ATTAatgttttgttcattttttttcagcGGAGAAACGATCAAAAGGAAGA
CAAGAATCTTATTCAACGCACAATGAAGGTCACGGTAAGAACTTTGGACA
CTTCTTTAATGCTCctattttcttagaaaattatGATTTAGAGAGAAAAG
CCGAACAACAGATTAAGAGTATTTATAGTAGGCTTGTGCTTCTTCCAAAA
ATGACTGGAATCCTACGAAATTGTATGAAATCAACCTAAACTAAAAAGCT
AATGATGTCCTTTATACTTCCAGGCTAGCATGCTCAACAATATATGAATT
ACTTGCATTTTGTTGTTACTTTAATTTCTTAGAATTCCAAGATAACGTGG
ATCGAACGCACGACCGTCCACGTGGTAAAAAGGTCACCAATCCGGAACAC
CCGACACAAGATCCGGAACACAGTAATAATAAACCGGAAGCCGTCAATAA
GAGAGCGTTACAAATCGTGAACCGTGTCCGTGACAAATTGACGGGACGCG
ATTTCAACAAAGACGAAGCGATAGATGTTGACACACAAGTTGATTTATTG
ATTCAACAAGCCACTTCACATGCTAACCTCTGTCAAGCTTATATCGGATG
G Coding sequence (CDS) from alignment at sc0000493_pilon:26119..29719+ >XLOC_011272 ID=XLOC_011272|Name=XLOC_011272|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2406bp|location=Sequence derived from alignment at sc0000493_pilon:26119..29719+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTACATATGATGAAGACAACTCCGTCAATAAAACTCGTATGCCCCGAAA
CTGTGATTTCTATAGAATGATAACCTTTGTACCCATATTTTTTACCATTA
TAGGAAGCAACGGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGAT
TTGCGACAAGACGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACT
GTTAGCCAACGACTCGGTTACTTTCAAACGACATTTAAGAGTACATATGA
TGAAGACAACTCCGTCAATAAAACTCGTATGCCCCGAAACTGTGATTTCT
ATAGAATGATAACCTTTGTACCCATATTTTTTACCATTATAGGAAGCAAC
GGTGCAGAATTCATGTTCTTACTGAAAGGCCACGAAGATTTGCGACAAGA
CGAACGTGTCATGCAACTCTTTGGTCTTGTCAATACACTGTTAGCCAACG
ACTCGGTTACTTTCAAACGACATTTAAGTATTCAACGTTACCCAGTTATT
CCGTTATCAACAAACTCGGGATTAATCGGATGGGTACCGCATTCCGATAC
TTTGCACACGCTCATTCGAGACTATcgtgaaaagaaaaagattatgCTGA
ACATCGAACATCGAATCATGTTAAAGATGACGCCCGACTATGAACATTTG
ACGTTGATTCAAAAAGTGGAGGTTTTCGAACATGCTTTGAACACAACACA
GGGTGATGATTTAGCGAAAGTGCTCTGGCTGAAGAGTCCCAGCTCTGAGT
ATTCAACGTTACCCAGTTATTCCGTTATCAACAAACTCGGGATTAATCGG
ATGGGTACCGCATTCCGATACTTTGCACACGCTCATTCGAGACTATcgtg
aaaagaaaaagattatgCTGAACATCGAACATCGAATCATGTTAAAGATG
ACGCCCGACTATGAACATTTGACGTTGATTCAAAAAGTGGAGGTTTTCGA
ACATGCTTTGAACACAACACAGGGTGATGATTTAGCGAAAGTGCTCTGGC
TGAAGAGTCCCAGCTCTGAGGTTTGGTATGACCGCCGGTTAAATTACACG
CGGTCGCTCGCTGTAATGTCAATGGTGGGTTACGTTCTTGGATTGGGTGA
CAGGTTTGGTATGACCGCCGGTTAAATTACACGCGGTCGCTCGCTGTAAT
GTCAATGGTGGGTTACGTTCTTGGATTGGGTGACAGACATCCTTCGAATT
TGATGTTGGATCGAATGTCTGGAAAGATTTTACATATCGATTTCGGTGAT
TGCTTCGaaACATCCTTCGAATTTGATGTTGGATCGAATGTCTGGAAAGA
TTTTACATATCGATTTCGGTGATTGCTTCGaaGTTGCAATGACGAGAGAA
AAGTTTCCCGAGAAAATCCCATTCCGTTTGACCAGAATGCTGACGAACGC
TATGGAGGTTGCAATGACGAGAGAAAAGTTTCCCGAGAAAATCCCATTCC
GTTTGACCAGAATGCTGACGAACGCTATGGAGGTGACGGGTATTGACGGC
AACTACCGTATGACGTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAA
AGACAGTTTGATGGCCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGA
ACTGGCGCTTGATTGATAGTGACGGGTATTGACGGCAACTACCGTATGAC
GTGTGAAAGTGTCATGCGTGTTTTACGTGAAAACAAAGACAGTTTGATGG
CCGTTCTCGAAGCTTTCGTTTACGATCCTTTATTGAACTGGCGCTTGATT
GATAcGGAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAACGCACAA
TGAAGGTCACGcGGAGAAACGATCAAAAGGAAGACAAGAATCTTATTCAA
CGCACAATGAAGGTCACGAATTCCAAGATAACGTGGATCGAACGCACGAC
CGTCCACGTGGTAAAAAGGTCACCAATCCGGAACACCCGACACAAGATCC
GGAACACAGTAATAATAAACCGGAAGCCGTCAATAAGAGAGCGTTACAAA
TCGTGAACCGTGTCCGTGACAAATTGACGGGACGCGATTTCAACAAAGAC
GAAGCGATAGATGTTGACACACAAGTTGATTTATTGATTCAACAAGCCAC
TTCACATGCTAACCTCTGTCAAGCTTATATCGGATGGAATTCCAAGATAA
CGTGGATCGAACGCACGACCGTCCACGTGGTAAAAAGGTCACCAATCCGG
AACACCCGACACAAGATCCGGAACACAGTAATAATAAACCGGAAGCCGTC
AATAAGAGAGCGTTACAAATCGTGAACCGTGTCCGTGACAAATTGACGGG
ACGCGATTTCAACAAAGACGAAGCGATAGATGTTGACACACAAGTTGATT
TATTGATTCAACAAGCCACTTCACATGCTAACCTCTGTCAAGCTTATATC
GGATGG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000493_pilon | genome | sc0000493_pilon:26119..29719 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 937-1203:3335 |
| Aaloc | 880-933:3030 |
| Aaloc | 742-876:2646 |
| Aaloc | 667-741:2289 |
| Aaloc | 595-666:1377 |
| Aaloc | 511-591:972 |
| Aaloc | 241-510:526 |
| Aaloc | 1-237:1 |
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