XLOC_009939 (mRNA) -

Overview


Name	XLOC_009939
Unique Name	XLOC_009939
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000338_pilon:13889..18699-
coding sequence from alignment at sc0000338_pilon:13889..18699-

mRNA from alignment at sc0000338_pilon:13889..18699-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_009939 ID=XLOC_009939|Name=XLOC_009939|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4811bp|location=Sequence derived from alignment at sc0000338_pilon:13889..18699- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATGTTGTATCACATTCTACAGCACAACTCTTACTGCCGTGTTCAT
GTTACTGCAACTTCAATTCATTGATCAAGCTCCACTCGATAAAGGTATCG
GAGCCAATAGTGAATTATTACGCAATGGTAACAACAAACAATCTATAGCA
ATTTCAACAGCTTCAAACAACAACGAACGCGTTAAGAATGTAGCATTCTT
AGATGGAGGAACATCCACCACAGCTGAGTCTACCAGCTTTCCAAGCGAAT
CTGCCAGTGATAGTGATAAAAAAGCGAACAAAAGTAATAAAGTTTTTGTA
GTTGCTCGTGTCTACCCACACCATTACCTTGAGAAATATGGCAAGACTAA
AACATCTGGATCACTGCGCTTGGGAGATAAAGAGACAGATAACTCCGGGT
CTTCCGACGGACCTAGTATCTTTGACATACTAAATGAAATCGGAAATTCA
GGGCAAGGAACAAGTGAGAATACGGACAACGAAATATCTGGAACAGAACC
ACCAACACAAACAACGGCGGGGGAAACAGAGCCAGTACCACCTTCAGAAA
CGTCTCCCTACTACACTGACACGACGGAAACCACACCTTCATTCGTGGAG
ACAACTCCACACACAACAGAAACAATGGAAGAATTAAATCCGACTACTAT
TGAAGTAGCTGAGACTACACCAAACTCTCAGGAAACTACACCAACGTCGT
TCGAAACGACGCCAATAACGACGGAAGCGGCTCAATCTACGTCACAAGAA
ACCACGCCAAACTTTCAGGAAACTAAACCAACGTCATTCGAAACGAAGCC
AATAACGACGGAAGCGGCTCAATCTACGTCACAAGAAACCACGCCAAACT
TTCAGGAAACTAAACCAACGTCATTCGAAACGACGCCAATAACGTCACAA
ACTTTACGATCTACTTCAAGACAGTCATCAGAAACTCCAACACATACGTG
GTCCAAAACAGAAAGTACGATTGGTACAAAACAACCAACGATTTCTAAAT
GTGAATGTCCTAGAGAACACAAAGACAAAGGTAAGAAATGGGCTTTTCCA
GAAAAAAATTTAATAAGAGTGGAGGATAGAACATTTTTTGGAAATTTATC
CCCCGAACATTGTGACTTTTAACCCCCGGAAAACATTTCTAATCCCCCGG
ACAAGCATTAGTTGATCCCCTGGACACTCAAAATTACCTTCAAACAGAGC
AAAATTACCCCAGAACGGAGCAAGTTTACACCCCGGACAAGGCAAATTTT
GTAGCTTTTTCAGTACCCCCCAGACACTAAATCCTCCACTCCACCCCCTA
TATATGAACATTTTCTGGAAGATTTTAATCTGTGATATTCACAAAAAATA
TCATATACGGAAGCATCCCGAAACGACCGGGTATTTGCCGTTTATTTGGA
CTTTAAACAATAAAACTAGTGGCAAACGCCCGGGCTATTTTTGGTGCTTC
CGTATGAAACATTACGTCATTAATATCATGAAGTGAATTCTTGATGTGGA
AAATAGATACAATGAAGATCAAACTTCAATCTACATTCTCAGCTTTTAGA
TTCTCAGATCCTAAAGTCGGCGTAAGTTTTAGGTCTCGTGTTAAATCTTA
GAGTTAAAGCTGTACGTTTTAGAAAAATTAGAGTATTTAAAAATCGATTA
AAAATATTGCAGGAAATTCCCCCCTTTTTCACCCCTGTCTCACAGCCCCG
GTGAAACTTTTTCCCACAGTGGGGATGAAAATTTCGATTGAAATCTCAAT
GGGGATAAAAATTATATTGTTCCAAGGTTAAAAATTCCAGTGGGGATGGT
TTTGGAGTGCAGTTTCTAAACAATGAATTTCGCGAATGGGGAGGAAATAA
AAGTTAATTTCTCAGTGAGGCCAAAATTCTAGGGTATTTTTCCCAGCGGG
GATGAAATTTTGCCAAATTTTCCAGTGTGGCTGGGGCTCCAGCGGGTCTG
TGAGACAGGGGCGTGTCCTTTTTATCAAATGTTATGAGTTTCATTCAAAA
TACTTAAGATTTCTGATGTAAGCCAGAATAGAACTTTTTGCACTGCTTGA
ACCTTGACCAATTGGTAGCCACTCTTACTGAGTTCAAGATTTTATGTTTG
TTCAAGAGTTTATGTATGTGTGCTTTTCTGCGACGGAGATGGAAAGGTTC
TAATCTTTCTAAATCCTGACCAACTGAGAACGACGGTAAATCAGCACTTT
TACTTCCCTCGATTTCGAGGGTCAAAACGGTGGGATATTTCAAATCGCTC
AGCCACTTGACCGTCCTCAAAAGCGCAAATACATAAACTTGCTACTACGA
GAAACACAGCGGTCGCCTTTCTTTAACATCAATTTACAAACAACGTAGTA
CAAAGCTGATCTCACTTGAAACTATTGACAAATTGTCATTCTTTCAGATT
CTAAGAAATCCAAGCACGAGCAGGAATCGAATTGGGATCAATTCAAGCCT
GACTTCACATCAAGTACCGACGATCAAAAACACTACCAGCTTGCAGAATA
CATCTCGAAACATATTTTCAAACATTACCCAGAATACCGCATCCCACTGC
TAGCAAAATATTTAAGTAAAAACACAGAACAGAGGGCTTACGATGGGATG
GTGATGGAGTTTCAACAACCAAATAATTTCAATATATTGGTCACTGATTC
TTATTCGCAATTTAACAACGCAGGAAGAGATGGAAGAAATAGAGGAGGAT
ACCAATCTGTGGAACAGTATCCATCCCTTTACCAATGTACAAAAGGTAAC
CCAGCTGGCACACAACGTTGTTTTAACGTTCAAATAATGTTATTTGGACG
TTACGAATGTCAAATGGACGTTGTTTTGACGTTGGGTGCTGGCTGGGAAT
GGGCTACACCATTTTTTTAAGAGATTAGTTTTACCAAGCAGCCTTAATGT
TTCTTAAGAAATCGACCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTA
AACTTTTTGACATAATCAGCCTATTTTTCATGCAAAGAAAAAAAACATTT
GTTTTGATTGGAAGGTTCTTAAAAAACCGAATTAAAAATTTTTATTTTCT
CATTCTCAGCCTCAGCATGTTTCTTAGATTTTTCTTAGTTTTTAGGCATT
CTGAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAGAAAAAACGTATATT
CTATAAGTAGTTTGTATCTTCTATATGGCCCTATATGTTGAGGAAGTGTG
ACGTCCAGGGTGGTCAGGAAAATAAAAAATCCAGGGGGGGGGTCTGGTTT
TTGAGTGTAAAAATTCAGTGTGGCCAGTAAAATGAGTTGGAAAATCCAGA
GTGGTCAGTAAAAAGAGGTTGAAAATCCAGGGTGGCCCAAAAAAGAGACG
AGAAAAAAACCCAAAGGGGTCCTGAAAAATTGAAATAAGATCCAGGGGGG
TCACCTTTCCCAAAAGAAACCTTCTCAACAAAGAGAGTACAAGTTTTTTC
TGAAACAGCCCAATATATTGTGAATGCAGATTTGAACTTTGAAAGAAAGA
TACACAGAGTTTCAAATAATCTTATCCGAATTTTTCGTTGTCAAAATTGA
TCTCATTAAGCGGCTCCTAGTGTTATTTAAATTAAAATTGATAGGAATTT
ACATTAGAGTAGAGTTCATTTCTGTACAAGAGGTCTACCAGGATCTCTTT
TCCATAGATTGTACTTGAATCGCATGAATAGTTTCGTTCTTGATTTCTTA
ATCTTTATACAGGGGGACCTAGGCAAAATAGGGTACGGGGACGTGCCGCT
GGTCAGAGCCACTTTTTTAGGCTCTGAAGATATCTGACAGGGTCCCAAAT
TTCCTAATTTTCAAGATGTGAATCTGACAGAGTCAACTTCTGGTTATTTT
AAACAATTTTCAGGGTGGAAATTAGAAATTTTTCTGACAGGGTCCCAATT
TTCAAACTCCCGCGGCTTGTTCCCGTTCATATTCTTCATTTTCCATAGCA
ATTCGTTATTGTTCCATCAATCCGAAATATTGCCAATACCAAGAAGGTGA
TTATAACTCCAACATTATCCTCGTCGTCCCTCACGCTGGCTCTGTGAAGC
CGGAAACGATCAAAGAACGCTCACCAGGGTGCCTCGTCAACGGTCAATGT
GTTTATCTTCATAACTGTGGAATACCGGACAGTGTTCGATGTCCGGTCTT
CACGCAACCCGATCGTAATTCAAAAACTCTAGCTTTCAACGTTGCAACTC
ATATAAAGAGTCTGACCGGAACCCGACCACATATTGTTGTCATGGATTTA
CACCGGTCGCTTGTTGACGTAGACGGATCACGCGATGAAGGCGCTTTTGA
TGACGTCACTAGAAGTGCGTGGTATGATTTTCATAACTTTATAAGTCTTG
CAAAGCTTAAAATACAAGGGAACGGACTGCTGATTGATTTACACGAACAT
AAGCACAGGCATGGCCTGATCGAACTTTCTTACGGTGTTGAAAAAACAGA
GCTTTCACAAAAGACTAACGCGATGAGCGAGTCTTCAATACGGAGCCTTG
TGAATCGGCACCAAGACGCCAGTGATAAAGACCTGTTAATTGGACCCAAA
TCTTTAGGGGGAATATTAGAGAAAAGACATATAGAAACTATACCGTCTCC
AAATAATCCGGAAATGACAGAATCCGGGTATACCGATAGACAAATGATTA
CAAAGCTATACGGATCAATGTATGGAGGAACCGTAGACGCTATAAGAGTC
TCAGTACCGCGAAAATATCAGATGGGACAAGACGCTAAAATGTTCAGTCA
AGTTTTATCCGAATCTATTAACGACTTTGTACAAGAAAACTACGCGGATG
AAAAGCCGTAA

Coding sequence (CDS) from alignment at sc0000338_pilon:13889..18699-

>XLOC_009939 ID=XLOC_009939|Name=XLOC_009939|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4482bp|location=Sequence derived from alignment at sc0000338_pilon:13889..18699- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATGTTGTATCACATTCTACAGCACAACTCTTACTGCCGTGTTCAT
GTTACTGCAACTTCAATTCATTGATCAAGCTCCACTCGATAAAGGTATCG
GAGCCAATAGTGAATTATTACGCAATGGTAACAACAAACAATCTATAGCA
ATTTCAACAGCTTCAAACAACAACGAACGCGTTAAGAATGTAGCATTCTT
AGATGGAGGAACATCCACCACAGCTGAGTCTACCAGCTTTCCAAGCGAAT
CTGCCAGTGATAGTGATAAAAAAGCGAACAAAAGTAATAAAGTTTTTGTA
GTTGCTCGTGTCTACCCACACCATTACCTTGAGAAATATGGCAAGACTAA
AACATCTGGATCACTGCGCTTGGGAGATAAAGAGACAGATAACTCCGGGT
CTTCCGACGGACCTAGTATCTTTGACATACTAAATGAAATCGGAAATTCA
GGGCAAGGAACAAGTGAGAATACGGACAACGAAATATCTGGAACAGAACC
ACCAACACAAACAACGGCGGGGGAAACAGAGCCAGTACCACCTTCAGAAA
CGTCTCCCTACTACACTGACACGACGGAAACCACACCTTCATTCGTGGAG
ACAACTCCACACACAACAGAAACAATGGAAGAATTAAATCCGACTACTAT
TGAAGTAGCTGAGACTACACCAAACTCTCAGGAAACTACACCAACGTCGT
TCGAAACGACGCCAATAACGACGGAAGCGGCTCAATCTACGTCACAAGAA
ACCACGCCAAACTTTCAGGAAACTAAACCAACGTCATTCGAAACGAAGCC
AATAACGACGGAAGCGGCTCAATCTACGTCACAAGAAACCACGCCAAACT
TTCAGGAAACTAAACCAACGTCATTCGAAACGACGCCAATAACGTCACAA
ACTTTACGATCTACTTCAAGACAGTCATCAGAAACTCCAACACATACGTG
GTCCAAAACAGAAAGTACGATTGGTACAAAACAACCAACGATTTCTAAAT
GTGAATGTCCTAGAGAACACAAAGACAAAGATGGCATGTTGTATCACATT
CTACAGCACAACTCTTACTGCCGTGTTCATGTTACTGCAACTTCAATTCA
TTGATCAAGCTCCACTCGATAAAGGTATCGGAGCCAATAGTGAATTATTA
CGCAATGGTAACAACAAACAATCTATAGCAATTTCAACAGCTTCAAACAA
CAACGAACGCGTTAAGAATGTAGCATTCTTAGATGGAGGAACATCCACCA
CAGCTGAGTCTACCAGCTTTCCAAGCGAATCTGCCAGTGATAGTGATAAA
AAAGCGAACAAAAGTAATAAAGTTTTTGTAGTTGCTCGTGTCTACCCACA
CCATTACCTTGAGAAATATGGCAAGACTAAAACATCTGGATCACTGCGCT
TGGGAGATAAAGAGACAGATAACTCCGGGTCTTCCGACGGACCTAGTATC
TTTGACATACTAAATGAAATCGGAAATTCAGGGCAAGGAACAAGTGAGAA
TACGGACAACGAAATATCTGGAACAGAACCACCAACACAAACAACGGCGG
GGGAAACAGAGCCAGTACCACCTTCAGAAACGTCTCCCTACTACACTGAC
ACGACGGAAACCACACCTTCATTCGTGGAGACAACTCCACACACAACAGA
AACAATGGAAGAATTAAATCCGACTACTATTGAAGTAGCTGAGACTACAC
CAAACTCTCAGGAAACTACACCAACGTCGTTCGAAACGACGCCAATAACG
ACGGAAGCGGCTCAATCTACGTCACAAGAAACCACGCCAAACTTTCAGGA
AACTAAACCAACGTCATTCGAAACGAAGCCAATAACGACGGAAGCGGCTC
AATCTACGTCACAAGAAACCACGCCAAACTTTCAGGAAACTAAACCAACG
TCATTCGAAACGACGCCAATAACGTCACAAACTTTACGATCTACTTCAAG
ACAGTCATCAGAAACTCCAACACATACGTGGTCCAAAACAGAAAGTACGA
TTGGTACAAAACAACCAACGATTTCTAAATGTGAATGTCCTAGAGAACAC
AAAGACAAAGATTCTAAGAAATCCAAGCACGAGCAGGAATCGAATTGGGA
TCAATTCAAGCCTGACTTCACATCAAGTACCGACGATCAAAAACACTACC
AGCTTGCAGAATACATCTCGAAACATATTTTCAAACATTACCCAGAATAC
CGCATCCCACTGCTAGCAAAATATTTAAGTAAAAACACAGAACAGAGGGC
TTACGATGGGATGGTGATGGAGTTTCAACAACCAAATAATTTCAATATAT
TGGTCACTGATTCTTATTCGCAATTTAACAACGCAGGAAGAGATGGAAGA
AATAGAGGAGGATACCAATCTGTGGAACAGTATCCATCCCTTTACCAATG
TACAAAAGATTCTAAGAAATCCAAGCACGAGCAGGAATCGAATTGGGATC
AATTCAAGCCTGACTTCACATCAAGTACCGACGATCAAAAACACTACCAG
CTTGCAGAATACATCTCGAAACATATTTTCAAACATTACCCAGAATACCG
CATCCCACTGCTAGCAAAATATTTAAGTAAAAACACAGAACAGAGGGCTT
ACGATGGGATGGTGATGGAGTTTCAACAACCAAATAATTTCAATATATTG
GTCACTGATTCTTATTCGCAATTTAACAACGCAGGAAGAGATGGAAGAAA
TAGAGGAGGATACCAATCTGTGGAACAGTATCCATCCCTTTACCAATGTA
CAAAAGCAATTCGTTATTGTTCCATCAATCCGAAATATTGCCAATACCAA
GAAGGTGATTATAACTCCAACATTATCCTCGTCGTCCCTCACGCTGGCTC
TGTGAAGCCGGAAACGATCAAAGAACGCTCACCAGGGTGCCTCGTCAACG
GTCAATGTGTTTATCTTCATAACTGTGGAATACCGGACAGTGTTCGATGT
CCGGTCTTCACGCAACCCGATCGTAATTCAAAAACTCTAGCTTTCAACGT
TGCAACTCATATAAAGAGTCTGACCGGAACCCGACCACATATTGTTGTCA
TGGATTTACACCGGTCGCTTGTTGACGTAGACGGATCACGCGATGAAGGC
GCTTTTGATGACGTCACTAGAAGTGCGTGGTATGATTTTCATAACTTTAT
AAGTCTTGCAAAGCTTAAAATACAAGGGAACGGACTGCTGATTGATTTAC
ACGAACATAAGCACAGGCATGGCCTGATCGAACTTTCTTACGGTGTTGAA
AAAACAGAGCTTTCACAAAAGACTAACGCGATGAGCGAGTCTTCAATACG
GAGCCTTGTGAATCGGCACCAAGACGCCAGTGATAAAGACCTGTTAATTG
GACCCAAATCTTTAGGGGGAATATTAGAGAAAAGACATATAGAAACTATA
CCGTCTCCAAATAATCCGGAAATGACAGAATCCGGGTATACCGATAGACA
AATGATTACAAAGCTATACGGATCAATGTATGGAGGAACCGTAGACGCTA
TAAGAGTCTCAGTACCGCGAAAATATCAGATGGGACAAGACGCTAAAATG
TTCAGTCAAGTTTTATCCGAATCTATTAACGACTTTGTACAAGAAAACTA
CGCGGATGAAAAGCCGTAACAATTCGTTATTGTTCCATCAATCCGAAATA
TTGCCAATACCAAGAAGGTGATTATAACTCCAACATTATCCTCGTCGTCC
CTCACGCTGGCTCTGTGAAGCCGGAAACGATCAAAGAACGCTCACCAGGG
TGCCTCGTCAACGGTCAATGTGTTTATCTTCATAACTGTGGAATACCGGA
CAGTGTTCGATGTCCGGTCTTCACGCAACCCGATCGTAATTCAAAAACTC
TAGCTTTCAACGTTGCAACTCATATAAAGAGTCTGACCGGAACCCGACCA
CATATTGTTGTCATGGATTTACACCGGTCGCTTGTTGACGTAGACGGATC
ACGCGATGAAGGCGCTTTTGATGACGTCACTAGAAGTGCGTGGTATGATT
TTCATAACTTTATAAGTCTTGCAAAGCTTAAAATACAAGGGAACGGACTG
CTGATTGATTTACACGAACATAAGCACAGGCATGGCCTGATCGAACTTTC
TTACGGTGTTGAAAAAACAGAGCTTTCACAAAAGACTAACGCGATGAGCG
AGTCTTCAATACGGAGCCTTGTGAATCGGCACCAAGACGCCAGTGATAAA
GACCTGTTAATTGGACCCAAATCTTTAGGGGGAATATTAGAGAAAAGACA
TATAGAAACTATACCGTCTCCAAATAATCCGGAAATGACAGAATCCGGGT
ATACCGATAGACAAATGATTACAAAGCTATACGGATCAATGTATGGAGGA
ACCGTAGACGCTATAAGAGTCTCAGTACCGCGAAAATATCAGATGGGACA
AGACGCTAAAATGTTCAGTCAAGTTTTATCCGAATCTATTAACGACTTTG
TACAAGAAAACTACGCGGATGAAAAGCCGTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_009939	XLOC_009939-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000338_pilon	genome	sc0000338_pilon:13889..18699 -

Properties


Property Name	Value
Aaloc	1381-2241:862
Aaloc	1033-1377:2413
Aaloc	1-1029:4812

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XLOC_009939 (mRNA) -