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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000247_pilon:515926..518662+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_009688 ID=XLOC_009688|Name=XLOC_009688|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2737bp|location=Sequence derived from alignment at sc0000247_pilon:515926..518662+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATTCGGATACTTTTGttaacattttatttattttttgttattcttc
TGCAAGATTATATCCGCTGTTCAACCCAAAGGTGAATCGCACTTCTGGTA
AAGGTACAACGTTTGATTTGATATAACTTTTAACCAGTCTTTTgctcaaa
aaacttttgttctatttttttttctatttggttgagtcgcaagaggcttt
gaggcccattttcgcaactataagCGCTTTCAATTAGCGTCCTGttagca
ccttgaactgactacccaattcccctcacattgACCCGtgtgaaggttca
ttcacttggtAAGTGAactgctgcgagtgggaatcaaCCTCAGCCgtctg
tgcagcaaccaaggccaatgaccactataccacagcgcctccACTGTATC
AGCTAAAATAAGAGCCGGCATAGTCTCTAAATGGTgctcttccaaaaaaa
aatccatggTTGTTTAAAAGTGTCCTCTAAAACAGAAATCTCAATTACTT
AGAAAACCAAGTTGAAGATTcgatgaaaaaaagatttttatttctgaGAA
CTCCCAGAAGTAAACAGGCTAACCTGATTACTACTAACCCCACTTTGAAC
TTAGAATGCCTACACTTTTGTTggaattcttaaaaatttgaaCCCTTTAC
ATTGTAGTAACATTACAGGGCTTTACATTGTGGGTCATACACATTGGTTT
GGTTGGACAATGAGAGTTTCTAATGCTTTTTTCTCTCTTGTTTTAGTGCC
AATTCATAGAAAGGAGACAGCCCTTACAATTTACACGCCACCAAGCAGAT
TTGGACTTTGTTCAAGCTGTAGCTATGGCAACAGACCTACTCAAATTGCT
AATTTGAGCACAATCGATTTCGGATTTGAGCCGAAAGAAGCCGTATATTT
TAATTCAAAACTGGTTATCGAGACATATGAAGAAACCTTCGATGCAAAAG
GATTCTTAGATGGACTAAATGAATCTGGTAAACTCTCGGCAAAGGTCAAT
TTGGAAGTCAATGATAAGGGTGCTTCTGATAAAAATTACAATGATGAGCC
ATCCACTTCATCAAAGAAGGATGATAACTCTGGCAAGAAGccgaaaactt
tttttgatggTACCGTTGTGTTGACAGATCCGGTGGAAAATACCGGTGGT
CGGATCCACAAAAAACATCCTTCATATCAACCACCAAATGCAGCCAATGA
TGATTTTGATTACGGAGATTCCACATCATGGCATATTGATTATATTGGAC
AATTGTTTATAgatttcattgattttattCATGAGCCGTTATCTGCGGAA
GTGACTAAATATGAATGgttttattttccaattttcgaaaaggcTGGACC
CTACTTAAGCTGGTTTTATGAGGAAATCTTGGAGCCCCTTTTAGACCTCG
TCCTCGAAGTAGATTGGCAAGGCATTTACAACAGTGTTTTAAACAAATTG
CGGCGCTTAGATTGGATGTATGAGCCAGCATACGAAAATTTGAAGGCTTA
CGTTTTTAAGCCCATCAAGGAATGTATAAACCGTATTGACTGGCAAAATA
AATGTTCACAATTTGTCGATTTTTGTCGACCGTATTTTAGAGCTATCATC
GCTTTTTTCCGTGGCATCAATTATATTAGAGCTTACAATCGATTGGTTGA
TGTAATCCATCGCTTTGAGTGGTTCTATGGACCTATTATGGACTATGTGT
ATAGCATTGATTATCATGGCTATTGGAACAAGTTTTGCAACAAGGTTGAG
CCCTACTTACAGTGTGTCATCAACTACTTGGAAAGTATCGACTACGTTGG
AATCTATGACAGACTTAAGGAAAAATTCTGTACACTAGAATGGCTGTATG
GACcagcaataaattttttctACAATATTGACTATCAAAAGATTGGCctg
aaaatttgtaattttttcgagttttatGTCGTACCATTTTGCGATTACAT
TATTAGAATCGATTACGTCGGTGCGTATAATCAGACCACTGGTAAGATCA
ATGAAGTTGGTTCAACGTTTTCAAACACTAATGGTACATATTATGTACGT
TTTATGGCTGCAATGAAGAAAATCGATTGGAATACTGCTTACAAACAATA
TAGAGCTTTTACCTTCAAAGTCCTCACAAAGTTTGTTATCCCAGCTTTTG
GATATGTAAACGACATTGTTCTTAACTCCATTTATAAACCAACTCGAGAA
TACTTAATTGGAATTGATTGGAACGaattatttttagtattttcggATAT
GTATGGACCGTACTACCGACCGCCTCTAAATTTCGCTAAGAAAGTCTGTG
TTGCGATTATTCCTGACTCGATTTCAACAGCGTTTTCGAACTATACGAAA
AACATAGACTATGATTTTCTTTATCGAATACTCGAAAAACATTCCGAATC
TAACCGTAAACTCAGCTTAAAAGTTGCGAGCGTATTTGATTCTAAGTCAT
TGGACGCTGATGATCTCGGTGATCTTGAAGATCTGGTTGAATTATATGAA
CGAATGGCAACCTACCTATCCCAAATTAATGTCCGTGAGACCTTTTACAG
TCTTTATAATAAAGTATCGTTGTCACAGCTGAACACCCTATTCACCGATA
TGAAAGCCGTCCTGGAAGATACGGAAAAACTTATCGAACTGTATATAGCA
CTGGCACAATTCTTAACCATTTGTTTTTGGATAAATCTACTTTGGACTCG
TTTCATTTGCCCTCCAGAAGAATGTTACTTCTGTTAa Coding sequence (CDS) from alignment at sc0000247_pilon:515926..518662+ >XLOC_009688 ID=XLOC_009688|Name=XLOC_009688|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4188bp|location=Sequence derived from alignment at sc0000247_pilon:515926..518662+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTATTCGGATACTTTTGttaacattttatttattttttgttattcttc
TGCAAGATTATATCCGCTGTTCAACCCAAAGGTGAATCGCACTTCTGGTA
AAGATGTATTCGGATACTTTTGttaacattttatttattttttgttattc
ttcTGCAAGATTATATCCGCTGTTCAACCCAAAGGTGAATCGCACTTCTG
GTAAAGTGCCAATTCATAGAAAGGAGACAGCCCTTACAATTTACACGCCA
CCAAGCAGATTTGGACTTTGTTCAAGCTGTAGCTATGGCAACAGACCTAC
TCAAATTGCTAATTTGAGCACAATCGATTTCGGATTTGAGCCGAAAGAAG
CCGTATATTTTAATTCAAAACTGGTTATCGAGACATATGAAGAAACCTTC
GATGCAAAAGGATTCTTAGATGGACTAAATGAATCTGGTAAACTCTCGGC
AAAGGTCAATTTGGAAGTCAATGATAAGGGTGCTTCTGATAAAAATTACA
ATGATGAGCCATCCACTTCATCAAAGAAGGATGATAACTCTGGCAAGAAG
ccgaaaactttttttgatggTACCGTTGTGTTGACAGATCCGGTGGAAAA
TACCGGTGGTCGGATCCACAAAAAACATCCTTCATATCAACCACCAAATG
CAGCCAATGATGATTTTGATTACGGAGATTCCACATCATGGCATATTGAT
TATATTGGACAATTGTTTATAgatttcattgattttattCATGAGCCGTT
ATCTGCGGAAGTGACTAAATATGAATGgttttattttccaattttcgaaa
aggcTGGACCCTACTTAAGCTGGTTTTATGAGGAAATCTTGGAGCCCCTT
TTAGACCTCGTCCTCGAAGTAGATTGGCAAGGCATTTACAACAGTGTTTT
AAACAAATTGCGGCGCTTAGATTGGATGTATGAGCCAGCATACGAAAATT
TGAAGGCTTACGTTTTTAAGCCCATCAAGGAATGTATAAACCGTATTGAC
TGGCAAAATAAATGTTCACAATTTGTCGATTTTTGTCGACCGTATTTTAG
AGCTATCATCGCTTTTTTCCGTGGCATCAATTATATTAGAGCTTACAATC
GATTGGTTGATGTAATCCATCGCTTTGAGTGGTTCTATGGACCTATTATG
GACTATGTGTATAGCATTGATTATCATGGCTATTGGAACAAGTTTTGCAA
CAAGGTTGAGCCCTACTTACAGTGTGTCATCAACTACTTGGAAAGTATCG
ACTACGTTGGAATCTATGACAGACTTAAGGAAAAATTCTGTACACTAGAA
TGGCTGTATGGACcagcaataaattttttctACAATATTGACTATCAAAA
GATTGGCctgaaaatttgtaattttttcgagttttatGTCGTACCATTTT
GCGATTACATTATTAGAATCGATTACGTCGGTGCGTATAATCAGACCACT
GGTAAGATCAATGAAGTTGGTTCAACGTTTTCAAACACTAATGGTACATA
TTATGTACGTTTTATGGCTGCAATGAAGAAAATCGATTGGAATACTGCTT
ACAAACAATATAGAGCTTTTACCTTCAAAGTCCTCACAAAGTTTGTTATC
CCAGCTTTTGGATATGTAAACGACATTGTTCTTAACTCCATTTATAAACC
AACTCGAGAATACTTAATTGGAATTGATTGGAACGaattatttttagtat
tttcggATATGTATGGACCGTACTACCGACCGCCTCTAAATTTCGCTAAG
AAAGTCTGTGTTGCGATTATTCCTGACTCGATTTCAACAGCGTTTTCGAA
CTATACGAAAAACATAGACTATGATTTTCTTTATCGAATACTCGAAAAAC
ATTCCGAATCTAACCGTAAACTCAGCTTAAAAGTTGCGAGCGTATTTGAT
TCTAAGTCATTGGACGCTGATGATCTCGGTGATCTTGAAGATCTGGTTGA
ATTATATGAACGAATGGCAACCTACCTATCCCAAATTAATGTCCGTGAGA
CCTTTTACAGTCTTTATAATAAAGTATCGTTGTCACAGCTGAACACCCTA
TTCACCGATATGAAAGCCGTCCTGGAAGATACGGAAAAACTTATCGAACT
GTATATAGCACTGGCACAATTCTTAACCATTTGTTTTTGGATAAATCTAC
TTTGGACTCGTTTCATTTGCCCTCCAGAAGAATGTTACTTCTGTTAaTGC
CAATTCATAGAAAGGAGACAGCCCTTACAATTTACACGCCACCAAGCAGA
TTTGGACTTTGTTCAAGCTGTAGCTATGGCAACAGACCTACTCAAATTGC
TAATTTGAGCACAATCGATTTCGGATTTGAGCCGAAAGAAGCCGTATATT
TTAATTCAAAACTGGTTATCGAGACATATGAAGAAACCTTCGATGCAAAA
GGATTCTTAGATGGACTAAATGAATCTGGTAAACTCTCGGCAAAGGTCAA
TTTGGAAGTCAATGATAAGGGTGCTTCTGATAAAAATTACAATGATGAGC
CATCCACTTCATCAAAGAAGGATGATAACTCTGGCAAGAAGccgaaaact
ttttttgatggTACCGTTGTGTTGACAGATCCGGTGGAAAATACCGGTGG
TCGGATCCACAAAAAACATCCTTCATATCAACCACCAAATGCAGCCAATG
ATGATTTTGATTACGGAGATTCCACATCATGGCATATTGATTATATTGGA
CAATTGTTTATAgatttcattgattttattCATGAGCCGTTATCTGCGGA
AGTGACTAAATATGAATGgttttattttccaattttcgaaaaggcTGGAC
CCTACTTAAGCTGGTTTTATGAGGAAATCTTGGAGCCCCTTTTAGACCTC
GTCCTCGAAGTAGATTGGCAAGGCATTTACAACAGTGTTTTAAACAAATT
GCGGCGCTTAGATTGGATGTATGAGCCAGCATACGAAAATTTGAAGGCTT
ACGTTTTTAAGCCCATCAAGGAATGTATAAACCGTATTGACTGGCAAAAT
AAATGTTCACAATTTGTCGATTTTTGTCGACCGTATTTTAGAGCTATCAT
CGCTTTTTTCCGTGGCATCAATTATATTAGAGCTTACAATCGATTGGTTG
ATGTAATCCATCGCTTTGAGTGGTTCTATGGACCTATTATGGACTATGTG
TATAGCATTGATTATCATGGCTATTGGAACAAGTTTTGCAACAAGGTTGA
GCCCTACTTACAGTGTGTCATCAACTACTTGGAAAGTATCGACTACGTTG
GAATCTATGACAGACTTAAGGAAAAATTCTGTACACTAGAATGGCTGTAT
GGACcagcaataaattttttctACAATATTGACTATCAAAAGATTGGCct
gaaaatttgtaattttttcgagttttatGTCGTACCATTTTGCGATTACA
TTATTAGAATCGATTACGTCGGTGCGTATAATCAGACCACTGGTAAGATC
AATGAAGTTGGTTCAACGTTTTCAAACACTAATGGTACATATTATGTACG
TTTTATGGCTGCAATGAAGAAAATCGATTGGAATACTGCTTACAAACAAT
ATAGAGCTTTTACCTTCAAAGTCCTCACAAAGTTTGTTATCCCAGCTTTT
GGATATGTAAACGACATTGTTCTTAACTCCATTTATAAACCAACTCGAGA
ATACTTAATTGGAATTGATTGGAACGaattatttttagtattttcggATA
TGTATGGACCGTACTACCGACCGCCTCTAAATTTCGCTAAGAAAGTCTGT
GTTGCGATTATTCCTGACTCGATTTCAACAGCGTTTTCGAACTATACGAA
AAACATAGACTATGATTTTCTTTATCGAATACTCGAAAAACATTCCGAAT
CTAACCGTAAACTCAGCTTAAAAGTTGCGAGCGTATTTGATTCTAAGTCA
TTGGACGCTGATGATCTCGGTGATCTTGAAGATCTGGTTGAATTATATGA
ACGAATGGCAACCTACCTATCCCAAATTAATGTCCGTGAGACCTTTTACA
GTCTTTATAATAAAGTATCGTTGTCACAGCTGAACACCCTATTCACCGAT
ATGAAAGCCGTCCTGGAAGATACGGAAAAACTTATCGAACTGTATATAGC
ACTGGCACAATTCTTAACCATTTGTTTTTGGATAAATCTACTTTGGACTC
GTTTCATTTGCCCTCCAGAAGAATGTTACTTCTGTTAa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000247_pilon | genome | sc0000247_pilon:515926..518662 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 106-2094:749 |
| Aaloc | 1-102:1 |
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