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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000043_pilon:661774..668755+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_008577 ID=XLOC_008577|Name=XLOC_008577|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6982bp|location=Sequence derived from alignment at sc0000043_pilon:661774..668755+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtagACTCAAGTAGTGACAataaaattcttggaaaattaTCATCAGC
AGGCTGGATCTGTGATCAAAGAAAAGAACAATGGAGAAAAGATGGGTGAG
CAATCTTTTTCTGTAGACAtgactttattattattataattattagttat
tatCATTTTTCTAAATACCACTTTAATCagctttaatgggataaaatttc
gcgaggattaaattttgcggatttcatGGATTTGAGTGTCAACTGCGAAA
TTATGTGCCAATGGAATATGGAAAGTCCTCATCCGCGaaatctttttaaa
caaaactcaaataaactactggcatcaaagaagcgctaataatgcatATT
TTAAGGAGCaaacatgcatgatttggcagtaaagcaacaaaatagtgaaa
atatttGTACCATCCATGAaataagtccccgcgaaatcttaaaaacatga
tttttcagctttttcaatCCCCCCATCAAAAAGGTCAAATCCCTCCATCA
GCCTTATCCCCTCCATGACCAAAATGGGGACTTTGGTACCCATTATAGGT
TATTGTCATTATCACTTTATTTTCTCAAGAAACGGCATTGTAAATAAATT
AGCTCGTAGTTACGTAGAGGAATCTTGCTTTTTACATGTGAGAATCAAAA
GTAAAACTAAACTTTCCAgtatgtaaaaatatttaacaatggttGAAAAT
ACTTAATACACAAaaattaaccccccccccccatcctAAATCTCTCCGCC
CCATCAGCCTTAGcccccccccaacatttgaaaaataaaaaatatctgcC
CATCATACATTTGACGAAATTCTAAACCCCCACCCAATTTTATGAggggg
ggTGAAGTCATGTTAAAGTTTTGCGGATGAGCTCAACtgagaaatttaat
ccccgcaaaaatttATTGGTTGACATTCCAGTCTTTACATGTTATTTATT
AATACAGCCAAGCCCTAGTTAGGAGGACACAATCACTGGCTAAGTGGTAT
CTTAGGACCATAGTgtggaaaggggtctgatcccccttcttggcatctcc
ccatcctttaaaaatgcctatcccccaaggatcttggacaaaaatagcta
tatatgtgaaatatctttagagagagaaagcgaaataattccttcttctt
tttgactcagactactctataagaaaacttcctttcatgaagacaaaatt
tcataacagtgcttgaaaataatacaataaatatgtaagcccccccctTC
Cttgccaccccccccccctttttttaatgaaaatttctgatcccccttca
tttttttcggaaggtgtcaCCCCTCTTTAGAAAGGGGGGTCTCCTCATTC
CAATGAATTCGTTCAAAATGATGTGGTTATTATTATCATTGCTTGTATTC
TTATTCACATTTGTTTGACTCTTGATTTTTGTCACCACACTGCATAATCT
GGTGCCCTGCCTTTCTTATCTTGCGTACTAAAcgattgtattttttactg
tacTGACGATGACGATAGTCGAAAAGCTTTTAcaataaattgaacaaatt
tttgttttcttgatttttatcgaaCATAAACGATTAACATATTAGAAAAT
AagctaaaaaaatttgaagggACAAATTGTATACAAACTGATTTCATCCC
GTAATAAaatatcgtattatcatatagcaaccatattactgtattacacg
agattacaaatgagtgcagCCTATTCTGCTTTTGGATTCTTTATTGACTT
CTATTCTTTCTTCAGGTACATGAACTGTTGCGGATGCAAAGGACAGGCTT
ATAACCCAACTGATGTCGAACAAAAAGCAAACATTATCACACACGGGGTA
TTGCAAAAACTATGATTTCTTTTTAGCAGCCCCTTGCAGCTTTTGCTCCT
TATTCATAGATATACTttaagcgtacaaactttcgcgaacagaaattttc
gcgagatcgaaaaatcgcgaaattcacgacatttacttacgcgaatttca
ggaaaaaatattttttaagagcACAAACTTTGTAaacgttggataaaaat
gagaatttttaaaccaaaatttgataaaacgTGACAAATGTTCCTTGAAT
CCGATAAAAACCAGTAAAAACGGTTGTAAAGAAATAtgctgaaaatttta
taaagttttatagattttcaattttttaaagaaaatttcgcggcgagcat
aaacttttgcgaatcacCCTATTAAGAGATTTCAAAGACtttaactttcg
cgaaaaaggccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaag
tttgtacgcctactTAAAGTAATAGGTTTTGAACGGGTGTAAGAATCAAG
CTACAGTACTAACATTGACAAAAAATGGAAGAAGTTGATCTGTAGAGAGA
TCGGGCTAGATCTCCCTAACTCTCaggtttattttaatttttcctagCTC
TCAGTTTTCTTAATATGTTGTTTCTACAATCGGTGACGAAATACTTGCca
caaaaaggaaatccaccggagtgttttgaaaccacaatcgatttgcaagt
gctctaacgtaggttcgaagggtagagttttaactctgagttttaacagg
accttaggatctgaggatccaaaggttcaaaaatggtccagtaggtcttg
aaatatagcctagaaaccaataaatccctcccagatcgaaataatcgttg
aaatcaagttgaagcccgaaattgacattctcgctcgaacttcaattttc
gaaaaatggtaaattagccaaaagtgccaatatgttatggcactgattgt
aggtTTCTTACTTTAAAAACTACTATTATAAGGTTATTAAAATTGTTCAT
TTTGCAAAGAATTTTTTGCGCAGAAGTACTCCAAGCAGCTCCAAGATATG
TAGATTGAAATTCGAAGCAGTGCTAATATTTATGTCAACCCTGTAACGTC
ACATAGCCGCTTTCTCTAAGTGCTGACGAAGAAAGAACAAAATTTAATAC
TCATagccactccacacaagccatcccacacaagccactcccaaacaagc
cactccacacaagccactccacacaagccactccacacaagccactccac
acaagccactccacacaagccactccacacaagccacaagccaaaagcTT
TCCAAAACGATATAACACTGCTAGTTCGCTGTATCTCAGAGTACTTCTGT
GGAAAGAAATCTTCCCAAAACTCTTCAAAAAATGCACTATACCGGGTGTC
TCTGTAAAAACTTtcccctgtttgattcaaaattgcgaaaaagtgaaaaa
catatattagcttgattttttcgaaatcgtttagaggagggtttaactta
aattttggtatatcaaactttaaagttgcttcattagatcaaaagttatg
aaaaaaaaagagtaaaaaaattgttttcaaaaagaacgcaaaaagacgaa
aaaacaaggtatcaaattagacaagaaaaCACTGTACAGACagtaaagtt
ttacttttgaactcgactgtgcatcttttttgttttattattcgttttta
ataattttaattgctaatttagagctccttttGGATTCATTAATGAGCAT
GAAGTTTCAACAAGCaacaaacttttatcaaaatttttccaaaagtttcc
aAAGCTTAGCGAGTCTATTTGAGTGGAGAAGAGAAAGTTTGAGTGTCCtt
ttttctaacaaaagatttgataccctattttttcgtctttttgcgctctt
tttgaaaaaattttgtttactctttttgtcataacttttgatataatgaa
gcaattttaaagtttgatatatcaaaatttaagttaaaccctcctctaaa
cgatttcgaaaaaatcaagctaatatattttttcactttttcgcaatttt
gaatcaaacagggggggTAGtttttttAGAGACACCCGGTATAATGAAAT
TCGACCAgcagttttattttattttaacaatataccttattacacgaata
ttactaggcaagtattcaacggccttgaaattaacactccAAAAATTAAC
ATGAATTTTATCTgatttttcaaggacaccatggctggttttaattaagg
gagtttttattaacacgaaatttttcaattcgtgttaataaaatgactag
taatattcgtgtaataataTATATCGAGTTCTCATTGTCTTGTTTACTTT
ATCTTTAACAAGCCTACTATTTTATGATTAATCCCCGAACAAAGGAAGGT
CTGTAATTTGTGCTCAATTTCTTCGTTCTAGATCAACATCCCTTTTGCAG
TTGTTGCTGTTTACTTCATGGTTATCAAATCGAAAGACAATTTAGACTTG
GTCTGTACGTTGGTGTATGGCACGAGTCTTTTGATGTTATTCACCGTCTC
TACACTCTTCCACGTCATCTCTTTGCTACCGAAGTGGAGGTATTAGActc
ttgtttttcatttttttgtccacCTTTTTATTAAAAGTTGCATTTGGGGG
GTGTGCTTTGATTTAACTAGGGTATTCTCAGGCGCCTGATAAACGGTGGT
CGGAATAAAAATAAGGTTATTACAGACTAAAACCTGGCTTTTTGGAACAA
AACATGAAACCCAAGCGGCGTAAATGCCCAGTAGTGTTGTTAGTGTcaac
atatttttcaatttgcAGAATCGCCATACAACTTAATTTGCAGGAGTGAA
TTTTTTCGATAGCGCAAATCGAGTCGGAAGagcaataaaaaattaattgc
tttaatttttttgagataAGTATCTCtaacagtttgaaaaagaaagattt
taccATTATCACTCGGAGGTATTAATTAtatgtagtttttttttaccCAT
GTGCCCAATAGTTAGTCAGATAACCCGATTTTTAGTCTGGACTCGTCATT
GAAAATTGCGCGCAGGCCCCGTcaaaatcttttcgaccagttgtgtttta
aaggcccattCCGCTGGGCCAATAAGGGATCCtttttttGATAgcactga
aaatattttcaaaaatttaataaacggcgggggtcctaataaggtccggg
ggttaCGAACAAAATCGATAAATTAACAAATAGGGGGTCCCCTTTATTAA
GCACCTGAAAATTAATTAGGGACAAATTCTGAGATACCAActtgtataga
ccttttcatgaattacttcacggtcacgaacatcacttgcctcgtattaa
agcaattaccatggtgattatgtcccttgagacattaaatgatttttttt
ttaatagaaagtagttttagtAAAATCCGCTgtgagttaatcaccatggc
tataatttcaaaacgaggcaagtaatgttcgtaacgtaatttatgaaaaa
gttctATTTTGCTACGTTTGCTTTTTGAATGTAATTCGGGAATATCTGTT
GCAAAAATGAAGGTTACCTTATACACCTAACCACCTAACACTTTTCTTAT
GAGTTATGTCGGGTCAAACTTTTTCAGAAGGCCTGAGTTGAGGGAACTta
tttttagcaaattttgagatttttaacaaaattcgcCCTGATTCatcctt
gatttttttctattacaCCTCTTTTTAGGCCAAAAGAACCAATTTAAACT
ACCATTCGCCAAAGTTTTTACTGTCTTCAAACTAAATGATAAgttctgtt
tatttttgttgttgtttaggGAGAGTAGGTTACGAAAGATATTTCATTTG
TGTGATCGATTCTCCATTTACATCTTCATATCTGCTTCTTACATGCCATG
GTAAGTGTGACCAGCTCATTCCTTTCTCACAGCTTCTTACATGCCATGGT
AAGTGTGACCAGCTCATTCCTTTCTCACAGCTTCTTACATGCCATGGTAA
GTGTGACCAGCTCATTCTCTTCTCCCAGCCAATCAGCACTCTAAGATTTT
CCACGCTAGCGTTTCTAGATTGTTTATTGCTTTCAGAAAACTTTCCCTTT
CTGACTATGGTTAGCCAAAAATGCTAGATGGGGTTGAGGCCATAGCTAAG
TAAACTTTATGGAATCTGTTAAGAAAGAAAACGATTTTTTCTCTTTGCCA
TGTCTTGGTGTCCAATATGTGGGGTTTACCCTCAGACTAAAAGGGTGTGT
GTTCAAAACCAACCAGTTTCACAGTTGTGAGGTCCTCTCTCGCCCACACT
GAGTATCTGGCATTGTTTTGTAGGTTGCTTCTTCAGCGGACGATCCCGAA
CGCGCATGACATCGTGACTTTGTTGTGGTCCATTGCTGCCATGGGGATAG
TATACTCGTTAGTCATGCATGAAAAGTATAccattttgttttcctttgtc
TTGTTAAGAATACACTCCCGAATATGTTTCCAACTAGCAATAAATTGTTA
AAAGCGTTGGAAATATTTCATCCATCTGTTTTATCTTGTAGGTGTTATTG
GGTCTTCCCAGAGTTCAAAATTGTAAATGTAGATTCGGGGTGGGCTTTGT
AGAACAATCTTGGGACGACCATAAGTTTTTGCACAACTGTATGTGAACAT
CGCTATGTTTTTACAAATTCATTGTCAACTATGAAAACGATACGTTAGGT
AATTTAAACATCTGTGAGTTTGTTTCTTGTTATCCATCAAAGAACGATTT
GATTAATATGCTACTTTTTCTTTATCCGTAGGTACAAAATGCTAGAGACA
GCCATTTATTTGTGTCAAGGATTCGGACCCGCCATCTTTCTCATTAAACA
CGTAAGTCCATTTCTTATTtgtaccctccTcAcctcagtgTTTCGCAACC
ATTTCGTTTCGGAGTCTGAACATCGTCTAAGTGTTACTGGTCCACTCTCt
ttttttAGGCATCCACAAGTTTATTCGAATTGGCGTTGGGCGGTTTGCTT
TACGTCATTGGagtaattttcttcaaatcgGACGGTCACCTCCCTTTCGC
GCATGCGATCTGGCACATCTTGGGTTCCATCGCAGCTTGGGTACATCATT
ATGGAATTTGGATGTATTTTTATGCAGGCTGA Coding sequence (CDS) from alignment at sc0000043_pilon:661774..668755+ >XLOC_008577 ID=XLOC_008577|Name=XLOC_008577|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000043_pilon:661774..668755+ (Clytia hemisphaerica_ch_hm2_pilon)
atggtagACTCAAGTAGTGACAataaaattcttggaaaattaTCATCAGC
AGGCTGGATCTGTGATCAAAGAAAAGAACAATGGAGAAAAGATGGatggt
agACTCAAGTAGTGACAataaaattcttggaaaattaTCATCAGCAGGCT
GGATCTGTGATCAAAGAAAAGAACAATGGAGAAAAGATGGGTACATGAAC
TGTTGCGGATGCAAAGGACAGGCTTATAACCCAACTGATGTCGAACAAAA
AGCAAACATTATCACACACGGGGTACATGAACTGTTGCGGATGCAAAGGA
CAGGCTTATAACCCAACTGATGTCGAACAAAAAGCAAACATTATCACACA
CGGGATCAACATCCCTTTTGCAGTTGTTGCTGTTTACTTCATGGTTATCA
AATCGAAAGACAATTTAGACTTGGTCTGTACGTTGGTGTATGGCACGAGT
CTTTTGATGTTATTCACCGTCTCTACACTCTTCCACGTCATCTCTTTGCT
ACCGAAGTGGAGATCAACATCCCTTTTGCAGTTGTTGCTGTTTACTTCAT
GGTTATCAAATCGAAAGACAATTTAGACTTGGTCTGTACGTTGGTGTATG
GCACGAGTCTTTTGATGTTATTCACCGTCTCTACACTCTTCCACGTCATC
TCTTTGCTACCGAAGTGGAGgGAGAGTAGGTTACGAAAGATATTTCATTT
GTGTGATCGATTCTCCATTTACATCTTCATATCTGCTTCTTACATGCCAT
GgGAGAGTAGGTTACGAAAGATATTTCATTTGTGTGATCGATTCTCCATT
TACATCTTCATATCTGCTTCTTACATGCCATGGTTGCTTCTTCAGCGGAC
GATCCCGAACGCGCATGACATCGTGACTTTGTTGTGGTCCATTGCTGCCA
TGGGGATAGTATACTCGTTAGTCATGCATGAAAAGTTGCTTCTTCAGCGG
ACGATCCCGAACGCGCATGACATCGTGACTTTGTTGTGGTCCATTGCTGC
CATGGGGATAGTATACTCGTTAGTCATGCATGAAAAGTACAAAATGCTAG
AGACAGCCATTTATTTGTGTCAAGGATTCGGACCCGCCATCTTTCTCATT
AAACACGTACAAAATGCTAGAGACAGCCATTTATTTGTGTCAAGGATTCG
GACCCGCCATCTTTCTCATTAAACACGCATCCACAAGTTTATTCGAATTG
GCGTTGGGCGGTTTGCTTTACGTCATTGGagtaattttcttcaaatcgGA
CGGTCACCTCCCTTTCGCGCATGCGATCTGGCACATCTTGGGTTCCATCG
CAGCTTGGGTACATCATTATGGAATTTGGATGTATTTTTATGCAGGCTGA
GCATCCACAAGTTTATTCGAATTGGCGTTGGGCGGTTTGCTTTACGTCAT
TGGagtaattttcttcaaatcgGACGGTCACCTCCCTTTCGCGCATGCGA
TCTGGCACATCTTGGGTTCCATCGCAGCTTGGGTACATCATTATGGAATT
TGGATGTATTTTTATGCAGGCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000043_pilon | genome | sc0000043_pilon:661774..668755 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 589-762:6809 |
| Aaloc | 520-588:6633 |
| Aaloc | 418-516:6175 |
| Aaloc | 337-414:5671 |
| Aaloc | 178-333:4282 |
| Aaloc | 97-177:1767 |
| Aaloc | 1-93:1 |
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