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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000523_pilon:61083..64682+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_008548 ID=XLOC_008548|Name=XLOC_008548|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3600bp|location=Sequence derived from alignment at sc0000523_pilon:61083..64682+ (Clytia hemisphaerica_ch_hm2_pilon)
CTGTATTTCAGTTATTTAATAAAAGATATGTCTTGGTGTAGAGCTGTGTG
GTTAGAATCTATTGGTCGTGATCAGTTTCGGGAGTTTGAAATGACCATTC
CAGCTAAATGGGTAATTGACAATGAAGTTTGGTACCCAAATGGGATGCAA
GTGACCAATTCATTTAACAATTTTGCAGACCCACAACCAACTTGGTCACG
GTTCCCTTTTGTTAAATTCAAACTGGAAAAAGGTAATTCTTTTCTAAGCT
ATTTATGGCTGCTTCTTAATGTCACAGAATGTCATAGTAATAGGGTTTCA
GAAATAGTTATGAGAAGAAACTTGATGGTCTCccttttgcaataaaaaat
agCTCCTTTTAGAtatctttttcttctcttttctctAAAGGAGACAAAGA
AACATGTGATGCTATTGCTGATTTGACATCTGCTAACGAAAGTGAAACAG
AAACAACGAGATCACCCAAGTTTGTTTCAGGAAAGGCACGTAAATCTAAG
AGTAAgtaaaacttttgatgaaaatgctTTATTAACCTtggagagacttt
ttcacaacAGTGTGCCAtttttttCTACTCGACGTAAAATCCTGACCCTT
TTGTTGACCTTTTATTGTAAATCTACTGTTTAGTAGAAAAAACAGGCACA
TACCCATCAACTTTTTTGTCGAAGTATCGTTGGTGACGGCAAACTAAGTT
CAACCCCAGGGTTacaatttcaaatgttttgagatTATGATTAATTTTAG
AAGCCAGTATTCCAGATGTCTCAACCTCTGATATGCCAACATTTCATCAA
GCTTTTAAGTAAGTGAAATATTTtagttgtgttttgtttttatagtttTC
ACATTTTGCTCCAACAGAACAATCACATCCGACATaattaattttgctcc
attTATAGGCGAATAAACCTTGGAGGAGGTTTTCAATAACACTTTCTCTA
AAgtgattgatttttgaaaacctaCTCTCCCCTTCTTAGCAAAGTTGTCC
CAAAATCACTTTATTCTTTTATGGCCTCTCCAATTCTATGTATAATTTTT
AGAGTGACAACTCCTCTTGTTTATTAGACCCCTCTACAATCAGGCACTGA
AGTTTGCAATTTTAGACTGTCtaattgtttttcctttttcttgatTCTCA
GAATAACAGCATCAGGCTCTTCAAGTGCAACAGTAACAGCAGGAACACCA
CCAGGCAGCACTCGTCAAAGCAGGATTTCTAATAGATCACCATTTCTTCG
CGAAACATTTAGCCCGAGGATTAACTCAACTCTTCCTGGAAGTTCACCCA
ACCAAAGTGCAACAGTAACAGCTGGAACACCACCAGGCAGAACACCACCA
GGTAGCACTCATCAAAGCAGGATTGTTGATGGATCACCTTTTCTTCGCGA
AACATTCAGCCCGAGGATTAACTCAACTCTTCCTGGAGGTTCACCCAACC
GTTGTGGTAATATTTGTGGTACTCTCACTATTACCCCTGTTTTCTTACCA
CATCTCTCCCTCCCTGAGAGTACTAATCCATGTGAAAATTcatggtggaa
aatttttttgtcaggGAGTAGGGGCATAGTGCATAGTGTGTGGGACTTGG
AAAGTCAGCATTCAGGTGGGAGTTTCTCGAGTGGTGGGACCTGAAATTTT
AGGTGGAGCCTTGAACCCCTGCACactgtgggggggggggtaaatttgct
cattagaaattttgtaatttgtaGTTTGAATTTACATTATTGTTCGTTCA
AAAGTTACGCAAATGACGTAAAAACAGGGTTTTTGGTGGCTTCGGCTAAT
TCAATAATATTAAATGAAACTATATTATTCTGGAGATTCGCACCATGATG
TTTGTTGAATATGAATTTCATTCAAACCTTTTTCTCtcataataagcaga
tattctcTGATTATCAATTTAGCTATTGAACGACTGCAGCGACCAACAAA
AGAGGCAAATTCCTTAGTTGGGCAGCAATCTTTGTGTAAGTTTCtgtctt
ttttattcaaaatatttttttgcaacTTAGAACCCTGGGGGATTTCTATA
CAACAGCTTtcaaaattggacccttacagtgcagcttATAATCGTTTAAa
acgtacccttacagtgcattccATTCTTGGTGCAGCATAAAACAATGTCT
TGAAAATTCTCGTCCTTAAAATCAGCCTTGGCTATATCAGTAAAATTGTc
aaaagtataaaattttggggtttttaaagtaaaaacacATTAATTAGAAC
AATTTTGACGAAGCAGATAAATGGAACAGGGGGTACTATTAAAATCTCag
acatgagtactaaaagggttCTTCGGAATGAAACTGATTCTTCTCTTGAC
TCTCTCGTTCTCATTTCGTTGGTAGGTAACACAAAAAggcattttagtac
tgacccctaCACCATCCCTTCCCTGCTGTTGAGTCAAATAACTTGTTTGT
TTCTACACTCTAACAAAAACAAGGTCACACTTTAAATGTTATTCTGTTTT
AGCTTCCCATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTG
ACATGCAGTTCCCAATGAGTGAAGCAAGTGAGTAACTTTACATGCCTTAT
AGTTTGGTCTTAAACTTGttcttttaacttttatttttcgagtagggacc
attcaaaaaaatttgtacgCTCAGTAGGATAAGGGTCAGCCTGAAAGTAT
CTAAAATATTCCTGTTGTGATTTAATCCTCtttgataattttattttcag
gatATCAAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCAA
GAGGAAATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTGG
TCCATCTCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCATCCTT
TCACCAACGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACGATGGT
CAAGCAAATCAATTAGTGAGTATTTCCTGATACACTCCTTTATCTATTTT
TTGTACACTTGCGTGTGTGTATGATCGGATTCAAATACTTTAGGATTAAA
TTTTCATTGATAAAAGGCCTAAATCTTTGAGAGACAAAGTTGAAGACGCA
GACCATGGTTTTCAGTCTGAAAGAATAGCCCAGTTTTTGGCAATAAAAGA
TTTAATATGTGCACAGTTTGTTAAATTATAATCGAACCACACTTTTTCTG
CTAGACCAAAGAGTTTGTCAGAATTGGAGGCAAAGACAAGATGGCATTAA
TGCGTAGTTGCATCGATAGGTAATTTTgcaaaatagttttgaaaagtttt
taacagaGAGACCGTtcaaaatttgaaccaaagttTAATAAGCTATTCGT
CCTTTGGTCGAAATCATCATTAAACTTTGGCAGAATAAATGAATCGAAAT
TGTTTCAGTGTGATGATCACAATTAAAGTCTTATGTTTGTAGATATGGAG
ACTGCAGTACAAATAGTGAAGATCTTATTTAGTTCTGTTCATGATTTTTC
GACCagacattttgaataaaatctcTGATTCATTGTATAAACTAAATAAT
AACACTATCTTTTTTAGTTTAATGGATCGAACAACCCAGTCAAAATTTAA
Coding sequence (CDS) from alignment at sc0000523_pilon:61083..64682+ >XLOC_008548 ID=XLOC_008548|Name=XLOC_008548|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0000523_pilon:61083..64682+ (Clytia hemisphaerica_ch_hm2_pilon)
CTGTATTTCAGTTATTTAATAAAAGATATGTCTTGGTGTAGAGCTGTGTG
GTTAGAATCTATTGGTCGTGATCAGTTTCGGGAGTTTGAAATGACCATTC
CAGCTAAATGGGTAATTGACAATGAAGTTTGGTACCCAAATGGGATGCAA
GTGACCAATTCATTTAACAATTTTGCAGACCCACAACCAACTTGGTCACG
GTTCCCTTTTGTTAAATTCAAACTGGAAAAAGCTGTATTTCAGTTATTTA
ATAAAAGATATGTCTTGGTGTAGAGCTGTGTGGTTAGAATCTATTGGTCG
TGATCAGTTTCGGGAGTTTGAAATGACCATTCCAGCTAAATGGGTAATTG
ACAATGAAGTTTGGTACCCAAATGGGATGCAAGTGACCAATTCATTTAAC
AATTTTGCAGACCCACAACCAACTTGGTCACGGTTCCCTTTTGTTAAATT
CAAACTGGAAAAAGGAGACAAAGAAACATGTGATGCTATTGCTGATTTGA
CATCTGCTAACGAAAGTGAAACAGAAACAACGAGATCACCCAAGTTTGTT
TCAGGAAAGGCACGTAAATCTAAGAGAGACAAAGAAACATGTGATGCTAT
TGCTGATTTGACATCTGCTAACGAAAGTGAAACAGAAACAACGAGATCAC
CCAAGTTTGTTTCAGGAAAGGCACGTAAATCTAAGAAAGCCAGTATTCCA
GATGTCTCAACCTCTGATATGCCAACATTTCATCAAGCTTTTAAAAGCCA
GTATTCCAGATGTCTCAACCTCTGATATGCCAACATTTCATCAAGCTTTT
AAAATAACAGCATCAGGCTCTTCAAGTGCAACAGTAACAGCAGGAACACC
ACCAGGCAGCACTCGTCAAAGCAGGATTTCTAATAGATCACCATTTCTTC
GCAATAACAGCATCAGGCTCTTCAAGTGCAACAGTAACAGCAGGAACACC
ACCAGGCAGCACTCGTCAAAGCAGGATTTCTAATAGATCACCATTTCTTC
GCGAAACATTCAGCCCGAGGATTAACTCAACTCTTCCTGGAGGTTCACCC
AACCGTTGTGGAAACATTCAGCCCGAGGATTAACTCAACTCTTCCTGGAG
GTTCACCCAACCGTTGTGCTATTGAACGACTGCAGCGACCAACAAAAGAG
GCAAATTCCTTAGTTGGGCAGCAATCTTTGTCTATTGAACGACTGCAGCG
ACCAACAAAAGAGGCAAATTCCTTAGTTGGGCAGCAATCTTTGTCTTCCC
ATGACAAGGACCATCCACATCCCTTGTCAGCTGAAATCATTGACATGCAG
TTCCCAATGAGTGAAGCAACTTCCCATGACAAGGACCATCCACATCCCTT
GTCAGCTGAAATCATTGACATGCAGTTCCCAATGAGTGAAGCAAgatATC
AAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCAAAGTGTCAAGAGGAA
ATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTACTGCTGCTGGTCCATC
TCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCCGTCATCCTTTCACCA
ACGTAAATGACTTTGAAGAATGGGAAAAAGATCTAGACGATGGTCAAGCA
AATCAATTAgatATCAAAAGCTCATGCTTGAGCGGATGCTTGAGATTTCA
AAGTGTCAAGAGGAAATCAGAAGTAGGCTTGTCCTGTTGGAGAGTGGTAC
TGCTGCTGGTCCATCTCGAGCGGTGTCAGAGAAGGCAAAGTTATTACCCC
GTCATCCTTTCACCAACGTAAATGACTTTGAAGAATGGGAAAAAGATCTA
GACGATGGTCAAGCAAATCAATTATTTAATGGATCGAACAACCCAGTCAA
AATTTAATTTAATGGATCGAACAACCCAGTCAAAATTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000523_pilon | genome | sc0000523_pilon:61083..64682 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 913-945:3568 |
| Aaloc | 700-912:2753 |
| Aaloc | 625-696:2505 |
| Aaloc | 562-621:1925 |
| Aaloc | 502-558:1399 |
| Aaloc | 403-501:1153 |
| Aaloc | 346-399:753 |
| Aaloc | 235-342:393 |
| Aaloc | 1-231:1 |
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