XLOC_007986 (mRNA) -

Overview
NameXLOC_007986
Unique NameXLOC_007986
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000293_pilon:364764..371057+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_007986 ID=XLOC_007986|Name=XLOC_007986|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6294bp|location=Sequence derived from alignment at sc0000293_pilon:364764..371057+ (Clytia hemisphaerica_ch_hm2_pilon)
TGgatgcaaaagaaaaaagagcttGGATATACACAGAAAACACACAGTGC ATTTGCACATTTTCTGGTGACAACACATCTGACTGCTGGTGAGAGTGAAA GTGAACCAGAAACTGATTCCTCAAACAGCCAACAAAGTGGAACAGATGAA GAAATAATTGTTGCTGATGTTATTGAAAGTGATGACGAACAACAGATTGT TGATGTCACTGGTGGTTTAGAACCTGAACATGATGATGATGGCGATGCTC TTCAGCAAGATGCAGAGtgagtgattcttataaatccCTAAATTGCAGTA GCAatttttactgcaattgcggtataaaaattgcttttaaatttttcaca taCCCAGGCAGTGTCAATTGAACTGCCTGATTATCTAACTaattgaactt aatcgaaccctatcaaacgatagctgttcaatttaccgaacccaatcgaa cacctaGATCGAACtgagaaaacttttgtaaagtTTGATGACTGTTCCAt agaccagacccgatcaatcaaacttgtcgaaccaatcgaacaagtTCTaa catcgaacgattaaagttcgattaacaACGAAATTAatcgaaatctaaaa tttttaaaagattgagAGTGtacgattaagttcgatcaatgggttttgGT TCGATCAGTttgataaaccaattttgtttgacaagtttgtgctgctccgc caccgtatattagcttcttttcaaagccaaattcggaatgtaaatcggga aattactttcgataaccGATTACATACATATTTCCTTTATCCCtttagcg ccagaggcggtttgttggggcgtagtattcTGCCACTCTGCCAcgcgcga aatcgcaacagaggggctacggactttattccggatagatAAATATCAgg gtacaataaacgtcaagtccgggaactgtcgaaatggcaatcgcgtgcca ggacaaagtttttgcaagcgagggaagatattacatgaggatttaatatc atcgaactaatcaaactttttactgaccgaactaatcgaactgctattgc ttcaaagattgtgagtgttcgattaggttcaactaatttttttaatcagt tcgatagttcgattagtttgattgtttgattgtttgattggttcgacaag ttcaaTTGATCGGGTCTGGCATAGaactttttgcctttccatccgccata ttgaattgtatgcaaaaattatggtggccgaattgccgtggtgaaattcc cttagaaagtatgcaaaacatatgcaaaaagaaagtattaatataaaact tacatacataattggcattatattaaagtgtaatcttgttgaagaaagat taaacttgcttctcttgaaatctaaaaataattatattcactcatctctt agaacaagcacttcaaaaaaaccataacattagacataaataAACTCAAG CTAAAAAATCACAAGCGAAGGTacaaaaacaatccttattcggctgacgg taaattattctcctgggaatagaaccgccaaatgatcaaacagttagtca cactagcgtcctgtcaaaatgcaggttctGTTGACACCGCCTGGACATAC AGCAAATTGCAATATTATGGCCACAATGACAAAGACTTGTGTTCGCATTG TCTGACCAACTTcttaattttctgattattttgagTCGGGCAGTCATGGA AAAAAGAGccattaattttaaatttccgATATATTTGAATTCTACCCGAC CccatattttgaaatcttttttttgccgACCATCCGACTCATTTTGTTTT ACCAAAAAATGATGCGAACAgaagttatttgtgattgtgGCCTATATACc aaaagtggataaatttttgcgtggattaatttttgtggttttcgcgaatt ttgaccatttttgcaaaaattttaaggcctttgatttgCGAAGATTAGTC CATGCGAAATTATTTAGAACTCTACaatcaagaaaataaaagtttGGGAA TTCTAGATAACATGAAAGCTTTTGAGTGAACTTTGTCTGCctttgttcga ttaaaaaacaaatctcttttctaGTTACAATTTATAAAGTTGCGAAATTC AAGCCACGCGATAATTTATAAGACCCTTggttcgcaaaatttaatccacg cgaaatctttaaattctcgTCTCACAAAAATTAGTACACGCAAAAAATTA TCCACTTAAGGTTTAAGAAACataattcaagattcaaggagaaaataGGC AATTTTTCtattagaccagcggccgaggcagtggattgtgtcacttcgta gggcaccccttagatcagggcaaatttttgatattatgctcctaataggg tgtagaattgacaaaaaaaaattgcccttcgaatctcctgcagttttcga gtgaatcgatttttagttaatcgatagaacttatcaagggtccccccttt actaacggttttttggaagtctgaaaatcaaatatctgagactaccaacg gattcagcgtgaaaagtagataaagaaaatggggttatttgttaagtttc gaccacctggtgccaagaaatagcatttttaaggcgaaaaatcgacgttt ttggcgttttccgatgacgtcagcattttcctatgagcattttcagaaaa aatcattcccacagctggatagccctgaattagtagtatccaaaaatggt atggtttgtcaactttcaatgtatagatctcgagataattcatttttaag gtggataaatatgctgaaaaactgctgactcagcaaaaaatatcgataat tttcaatatttaaactaaaatatctcgagatctagacatcgaaagttaac aaaccataccatttttggatactactaattcagggctatccagttgtggg aatgattttttctgaaaatgctcataggaaaatgctgacgtcatcggaaa acgccaaaaacgtcgatttttcgccttaaaaatgctatttcttggcacca ggtggtcgaaacttaacaaataaccccattttctttatctacttttcacg ctgaatccgttggtagtctcaaatatttgattttcagacttcaaaaaaac cgttagtaaaggggggacccttgataagttctatcgattaactaaaaatc gattcactcgaaaactgcaggagattcgaagggcaaattttttttgtcaa ttctacaccctattaggagcataatatcaaaaatttgccctgatctaagg ggtgccctacgaaaaccattttaaaggccttttttgaatctcggacgctg gtctatatCTTTAGCTAAAATgaacagacaaaatattttttccgtatacT GTATCAGATTCTTTTGATACCCGTTTAAGCCTTGCAGTATACCACAATTG AGGGAATTCCCTGACTGATATCACATTCACATACATTTTAGTAATTGTGT GAAATGCAGAATTGCAGGTGTTTTCAACCTTGCCAGTAAGCTACTTCTAC AGTAAGCTACTGTAGGAGTACTCTCTagtcttaaataaaaaaagcagTAC CAGGCtgaacttaaaaaattgttagtTTGCCGTCACCTGACCGACCCTAC CTCAAAACCTgcagacccaaaaaattttattgccattttaaagaatagCC CCAGCTAGATATATAtcgattctttttttaaattgaagcaAATTATAGGT CCTTCCTGGtccttcaaaaacttaaaaaaatcaaaaatcaaaatttgtat catgtttgtctcaagcataagaatcgtaaattccctgctagcacttctgt tttttattcaaaattacctaaatgtaaacaaactgatAACCCTTCCatgg ggggggtttcatggttggcggaggagcggaatcggcccttttttcggacg gagtggcggaatttggcaaaaatttagacggaattacggaaattgggttc tctgacggagacggaaaattagacaattttagtgcggaaaaacggaattt agcaaaaagatttgcggaatttcggaattgataaaagattttcaaaattt gcagaattttcgacaaaaatattgaatttcaaaggaactttggttcaatt taagacggtgtgacggaaattggagaaaaaattggcggaattacggaatc gggtaccccctgaaaccccccccctccATGGAcaaaaatcgccaaaataa aaaaagattccgaccgacccacctccaaaatctagggtcgggtgacggca aaccaacaattttttaaaaagcccAGCCCCAGCTAGATATATAtcgattc tttttttaaattgaagcaAATTATAGGTCCTGCTTTTATTATATCATCAC AACTCATTGTTGGTGCACTTTTATGTAAACAAAACTTGAGTTCATATTTT TGTCTGATTGAATGTTTGATGGCtttttgaaagaatgaatgactaatttt tcataGGAATGTTTGATGATCAAATGTACTCGCAAAACAAGGGGCAAAGC ATTGAGCACAGTCATCTGTGAGTATAAccttttggacctaccctggtggg gtggaggtcctataaattcacctctgtccgttcgtccatcagtccgttcg ttaccagtttttctcgagattgaatcataggaatcatttagtttttggta caaaggtgcaaagcggtagtggccaaaatgtgacggagcctgattttcga aaaaaaatgtttttgggcaaatttgggccaaaaaacggctaaaaaatgga ttttttggACATTGtcattgtgaaatattggatcgttgtttttttctgat tttttgcatgaaaataggtaaaagatgggtcaagcagatttttgtaaaaa aacttttcagctcaaaaaacgcatgtttatctataagaatcactattaat aagcatacatcaatgctcttagccaaattactcaattttttgatgatata gatgtctttttatgctcgcaaagtcttgaatatgaaagaatgtttcaaga gcatgaaattttggtttctaaacgtttttttataagaaacaaacgactaa ttttaataaatggtCACTATTTGTGACGTTCAtactcacgtagatatcaa ttatatatgtgttaaatgcataaccaggtaggtccataaaagtatcactt ctTTAAACTGAAATTCTATTACTACACATTTTAATGGAACTGCTGTAAAC AACGTCACTTGTCAGAGCtaaatgaatttaaatttttttctatctatttt cattgaaaagtatGAATTCTGGCCCAAATACTTCTAAAAGGCTTTTTCGT GAAGGTAAATGCCTCTTTATTAAGAATTCTTAacaaatagacgatatcgg ctttccaaaTTCTCCCCCAAATGATTGCCGATGATGCATTGCACAAAGAA ATTCACGAACAATATTGACTTTACGCGCAATGCATCattggtaatcattc ggggaggattgggaaagccgatatcgtctattgcaaaagtttatgcttgt ATTCtcacattcaaattttttaaaaatttgaaaatctttgaagctgtgaa atcaaaatttaaaatgtccctagcaggggggggcacgcagttactacaag acatgatgtgtagtaagtgctttttcaacacattttttcaggaccaccac cctttgcagttactacaccttggtagtaactgttttcagaaaagatttcc aggtaccacccctgtttttgagtgatatcatcaaaaacatgctcgaaatt accctaaattgcgattatttttcaacctagagccatttttgtgctagatt ttcttttaatttactcggttaacagctgttgagaacattttaatgataat tagggaaagcataatttcaaagtttataacaaaaatattttttttaacaa agaattctttcacaaaaaaattcatttttggtgaaaaattttgaaagttc tttaaaaagaattaaaatataagctcttactacaccaaaagtgctagcgt tagtgtttggcaccacccccaaacagcagttataactgttttcataactt ctgaatacagtaccaccacggtagtaagtgtcatactgtcttgtagtaac tgcgtgccccccccccctgtccCTAGTAGTAAAATCAATCATTGCCTTAA TTTTAAGACTGacaattttaaacattttttagaaaagcTGATAGTGAAAG AACATTGACTGAGAGTGAAAGAACATTGACAGCATTAAACTTGTCAACAC ATGATGAAGGAAAAATGAGtggatttttacagaaatggcAATGA

Coding sequence (CDS) from alignment at sc0000293_pilon:364764..371057+

>XLOC_007986 ID=XLOC_007986|Name=XLOC_007986|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=714bp|location=Sequence derived from alignment at sc0000293_pilon:364764..371057+ (Clytia hemisphaerica_ch_hm2_pilon)
TGgatgcaaaagaaaaaagagcttGGATATACACAGAAAACACACAGTGC
ATTTGCACATTTTCTGGTGACAACACATCTGACTGCTGGTGAGAGTGAAA
GTGAACCAGAAACTGATTCCTCAAACAGCCAACAAAGTGGAACAGATGAA
GAAATAATTGTTGCTGATGTTATTGAAAGTGATGACGAACAACAGATTGT
TGATGTCACTGGTGGTTTAGAACCTGAACATGATGATGATGGCGATGCTC
TTCAGCAAGATGCAGATGgatgcaaaagaaaaaagagcttGGATATACAC
AGAAAACACACAGTGCATTTGCACATTTTCTGGTGACAACACATCTGACT
GCTGGTGAGAGTGAAAGTGAACCAGAAACTGATTCCTCAAACAGCCAACA
AAGTGGAACAGATGAAGAAATAATTGTTGCTGATGTTATTGAAAGTGATG
ACGAACAACAGATTGTTGATGTCACTGGTGGTTTAGAACCTGAACATGAT
GATGATGGCGATGCTCTTCAGCAAGATGCAGAATTGACTGAGAGTGAAAG
AACATTGACAGCATTAAACTTGTCAACACATGATGAAGGAAAAATGAGtg
gatttttacagaaatggcAATGAATTGACTGAGAGTGAAAGAACATTGAC
AGCATTAAACTTGTCAACACATGATGAAGGAAAAATGAGtggatttttac
agaaatggcAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_007986XLOC_007986-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000293_pilongenomesc0000293_pilon:364764..371057 +
Properties
Property NameValue
Aaloc265-354:6205
Aaloc70-261:73
Aaloc1-69:1