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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000142_pilon:4079..9369+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_006860 ID=XLOC_006860|Name=XLOC_006860|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5291bp|location=Sequence derived from alignment at sc0000142_pilon:4079..9369+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATCCTGAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAA
TCCGATGGTGGAAATGGATAGTGGAGAGATTGTGAAACTCaaagaagaac
atcaaaaagaaattcaaaaactgACCTATGAATCAAAGATAGAATTGATG
GAATCACAAATGAAAACCATGCagctagaaaaagaaaatcaaactttatc
TCATCAATTTGAGATGTTCAAATTAAAGAATTCTCGTGAATCTCAATCAA
GTCAAGTTCAAGCCGATCAACAActccaaaaacaaaacatcgAGCTGCAA
AATAACTTGGTTGAAAAGGAGAAACAATTGCTAGCCAAAGAGCACGAAAT
GGTTCTGTACaagaaagaacaagaaaatgaatggaaaatgaaaataaaag
acttggaaaatgaatggaaaatgaaaatgaaagatttagaaaatgaacac
aaaattaaaatcttactAACGGAGACAAAATTGAACGAGAGGGAGAAAGA
AATAACAGAGAAAGAAGCAACTGTCCAACATTTGAAtagagaaattgaaa
atttgaaaagggtCATTCAAAAGCAAAACCAAGCTGCGGATAAAGTTGAG
GAAAATATGACGACGATCGATCGTTTGGTTTGGGGAGCAGAATATTTTCA
CGAAGGAAACAAATCTTCACTTTTGTACCCTTCTTATGGTGACTGGTACA
AAGCGATTTCCGGGATGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAA
TATTTGTTCATGAGAAAGGAATTCAACCAGGGCTATGGTGTTCTGTGTTT
CGTGAACAGAAAAGACAACAGTTACAAAGAACATTTGGCGGAATTTCTGg
ttgaagatttgaaaattgCATGGAAAACTGCAACTTTCTTTCTTCTCCAT
ACAAAGgattttggaaaatgtttaAAGTTTGGACGAATGAGTCAGAACGC
TTCTTATGAATTTTGGCATGTTTATAATGTTTCAAcagatttttattttg
gtgaTAAACAATCCGCAattgtttttggaattttaaagTGAATCAAATAT
ACCAAAGATTGTAACGAATAAAACATTTTAATCAGAGAGTCTAGGCTTTG
ATTGTTTTATCATTTGTAAGTTCATTTTTGAGAGCAGAATTTATTTAATC
AGGTGGGATCAGtaccagctggcacaaaacgttgttttaacgtacATTTA
ACGCTTAATGGACGTTAGGGATGTCAGATCGACGTTATCATGACGTTCTG
TGCCAGCCAATTCATGACCCTTTTTAGTGACGTGTTTGTACATGGAACCC
CAGCTTCACTCGGAAATTAACtttcatttcatccccatttaaaattcaaa
aaagaaaaaaattgcactccaaaaccattcccactggatttGAGAACCTG
AGAACAATAGaacttctatccccattggtATTTCGATAGAAATCTTTATT
CCCACTCTGGGAAGAGGTTCcctcggggctgtgagacaggggtgttttgg
tGTCATttggtactaaaataccaaaatggtTGTATAAAAAGGAAGACCTG
AGAGTTCTTACTACATTTTATTACTAAAACtagcaattttatttttcttt
cattttttttaaataccacTTCTTAATAGTGGGTGCACTTTATACGAAGA
TTTTATTATCTTTAGATTTTTAAGTACAgtatggaaaattttttccaaaa
gaaagaAATCTTATTGAATCATTCATTATGGCTTGATTCTTGTCTCGAAT
ATTTTGTGTCCTACTTTTTATACTGTATTTAGAAAGATCCGACTTTTCTT
TAGGAAGGCGATATCGCaaaaaaaGTGTTAGTGCTAGTGGGAGGAATGTG
CACAAAGTTGCTGACGATCAGCAAATTACAAAGCTCAAGAAAGAAcatca
aaaagaaattgagaaactcCAAATGGAATTTAAGATTCAACAACTGGAAT
CTGAGAACgagaaaacgttgaaaatcatgcagctagaaaaataattatta
ggCACTCGAATTTTTCTCCGATAAGGTTTACTCAAACCGAGAACTAACGA
ACGAGAAATATAGCTCATTAACTTTGACAGTTTTTCGGCAGAAATGAACA
ATAGCTTTATCCTTATCTGAGTGATGTGAAATTGATATATGCTCGATTTG
AATTGACGGTAATTGttttaaaactaaaactaaagtctgtctcaatataa
tttgcagggGAGACaaaaaaaGGCTATAACTGTTGATAGAATTcgggttt
tgtgcttgttgaaacgacaaacaggagtggaatattatcataaagaaaaa
actcaaaaaagatcggaaaatgaagattgaaaatgaagaagaagaaaatc
aacttcttcaataattgtgctatgattatcattttcacacgagtgattct
tagatcttagaacatcattaatgtgaaaaacttttcaaaaaaaattattc
aatcgAAAAATCTATATCTAAAGTTTATCACTGATTGACTACAAATACCA
Tcaaaaaataacgaaaaggagccctttttaaccctttaagtaccaatatc
gtatatatcagacatgggctatatgggagggcgaagccctccctAAAAta
cccagtttgagttagaaatcatcatttttggtctaactcgtagaaatcgg
attgtgcttcatggtcaagcaaaaaaaaaatcaaaagtgagtcttttcag
cgagattttaagctaaaaagtaaaaaaaaaatacaaaaatttgacaaaaa
tccacttttttaagattttgaccgtcttttgaccatttttggtcaacgag
tgatccaacaacctccaaatttggccctgcttaacttgattctgtcctcc
agcgaattagtttgaTGTTTTACCACTCGGcgcctttctatcattcagtc
aggtccgcgcagtgGGGCCTGGCTGCTTTAATTTCCCTTACCTACCCACC
CCCTTAGCCGCCGCCCAccccgcccttcctaaatcgggtgGCGCCGAAGA
CGCCttaaagaaagaggagactctaagctatccaacggacCATAAACGAG
CTTCtcactccttctagatccggagatataagcctttaaagtttgaacta
gcgattttctttaaaaatggacaaaaatacccacaaaatggcgaaattaa
gaacgttttaagaatttttttaggcttgaaacctaTAAGTTGAAATGtgc
tcaacttttttttcgagcgcgtgctacatttttatgtcgtaattttttta
tcaagcaaaacagggggggtcaacatccagatacctgacccatagccggg
tggtggtgtcttttttttctttaaaagtctgaaaaatcaagttggtattg
atgggggtgggtccccattttttagaaaaaaagagttatcctcagttggt
attgatactaAAATAGGGgatgggtacccctttttttaaataatatgatt
cagaaagttggtatccatatcaaaatgacagcaaaactttcctaattttt
gctcttatagctagaaaataccccggggtacatatcagtctaaacaggtt
tcaattggatttgttttagcttttgagtataatgactgtaaatgagtaat
aagaataaatgactttgaagtttgtttattttggactttttcgatatttt
caagttttatttttgatcccccctttttctgaaaattatgattttcaagc
tggtatcgataccaaaataagggggtgggtcccccctttttctgaaaatt
atgattttcaagttggtatcgataccaattttggggtggtagtgttaact
tagctcaaaaggtcaaaagtcagttttttgggctatgggttggtattata
aatgttgaccccgcCCCCtgagcaaaaaggattgaaaagccaaaaggtgc
gattgCAGCGCGTGCAAGTGGAGGCCAGCGTTATGAAATATAAGCCGCAA
GTTTATATCCAACTGAAGTTGTCATTACAtctaaaatttgttttgtttga
gCAAGAATGACATATGAAACTAAATCAATAGAAAGACAGAGGGGGGAGCA
taatttgatgttatttttaaaaacagttcGGGCATTTGAGATGATTTAAA
TAAATCAACTACTTGTTGCATTTTTGAAGCATTGAGTTTTTTATTCGTTC
TTGTTTGTGTCTGTGTCTCTTTATGTTTGTTGATGCTGTTTAAGAAAAAA
TGAATCCTGGAGATGAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAAT
CCAATGGTGGAAATGGATAGTGGAGAGATTgtgaaactgaaaaaagaaca
tcaaaaagaaattcaaaaactgACCTATGAATCAAAGATAGAGATGATGG
AATCACAAATGAAAACCATGcagttagaaaaagaaaatcaaactttatcT
CATCAATTTGAGATGTTCAAATTAAAGAATTCTTATGATTCTCAATCAAG
TCAAGCTCAAGCTGATCAACAACTGCAAAAACAGAAAGACGAGCTCCAAA
ATAAGTTAGTTGAAAAGGAGAAACAATTAGTAGCCAAAGAGCACGAAATG
GTTCTGTacaagaaagaacaagaaaatgaatggaaaatgaaaatgaaaga
tttggaaaacgaacacaaaattaaaatgttacaaaaggaggtaaaaatAG
CCGAGATGGagaaagtaatgaaagaaaatgaagaaaccatacagaaaatg
agagctgaaatgaaaaCTGTTAATGAGCAGGCAGTCAAAAAAGAAAGTGC
CCGGCTGGATACTCCTGTGAAAGCATTAACCGACATTGATCGTATGGTAT
GGGGTGCCAATTATTTCATCCAAGGGATTTCACATGGTCCAAAGCTGTAC
GAATCATACGAGAAGTGGTACGAAAGGATTTCATTGTTAATGGAGAATAA
AAAGTTGTATGTCGCAACCGAATTCTTGTTCAttagaaaaaagtttgata
aacaTCATAAAGTTTTGCATTTTGTGTCgaaaagaaaatatagcgcttat
AAAGACTGTAGTGACGAGTTCAACACTGAAGGTTTAACTAAGGAACTGTA
TACAAATGATGGTGTTGATCTTTTTCTACTCCACCCGAAAATTGATACTA
AACACCTAAAATTCAACCGCAATTTTAATGGCCATGATTATGAACGTTGG
CAAGTTAAAAACGTTAATCTGGAGTTTTATGATGATAATAACGACGCTAT
TGTTTTGGGGATACCTAAAATAAATGCTGGGTGGctattttggtcaaatt
ttacGCGTTTGAAATTTGAATCTAAGAAGATCGTAAATTAA Coding sequence (CDS) from alignment at sc0000142_pilon:4079..9369+ >XLOC_006860 ID=XLOC_006860|Name=XLOC_006860|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2250bp|location=Sequence derived from alignment at sc0000142_pilon:4079..9369+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATCCTGAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAA
TCCGATGGTGGAAATGGATAGTGGAGAGATTGTGAAACTCaaagaagaac
atcaaaaagaaattcaaaaactgACCTATGAATCAAAGATAGAATTGATG
GAATCACAAATGAAAACCATGCagctagaaaaagaaaatcaaactttatc
TCATCAATTTGAGATGTTCAAATTAAAGAATTCTCGTGAATCTCAATCAA
GTCAAGTTCAAGCCGATCAACAActccaaaaacaaaacatcgAGCTGCAA
AATAACTTGGTTGAAAAGGAGAAACAATTGCTAGCCAAAGAGCACGAAAT
GGTTCTGTACaagaaagaacaagaaaatgaatggaaaatgaaaatATGAA
TCCTGAAGATAAAAGAAATTTAGCTCACAGTGCTGTCGGTAGAAATCCGA
TGGTGGAAATGGATAGTGGAGAGATTGTGAAACTCaaagaagaacatcaa
aaagaaattcaaaaactgACCTATGAATCAAAGATAGAATTGATGGAATC
ACAAATGAAAACCATGCagctagaaaaagaaaatcaaactttatcTCATC
AATTTGAGATGTTCAAATTAAAGAATTCTCGTGAATCTCAATCAAGTCAA
GTTCAAGCCGATCAACAActccaaaaacaaaacatcgAGCTGCAAAATAA
CTTGGTTGAAAAGGAGAAACAATTGCTAGCCAAAGAGCACGAAATGGTTC
TGTACaagaaagaacaagaaaatgaatggaaaatgaaaatgaaagaacaa
gaaaatgaatggaaaatgaaaatgaaagatttggaaaacgaacacaaaat
taaaatgttacaaaaggaggtaaaaatAGCCGAGATGGagaaagtaatga
aagaaaatgaagaaaccatacagaaaatgagagctgaaatgaaaaCTGTT
AATGAGCAGGCAGTCAAAAAAGAAAGTGCCCGGCTGGATACTCCTGTGAA
AGCATTAACCGACATTGATCGTATGGTATGGGGTGCCAATTATTTCATCC
AAGGGATTTCACATGGTCCAAAGCTGTACGAATCATACGAGAAGTGGTAC
GAAAGGATTTCATTGTTAATGGAGAATAAAAAGTTGTATGTCGCAACCGA
ATTCTTGTTCAttagaaaaaagtttgataaacaTCATAAAGTTTTGCATT
TTGTGTCgaaaagaaaatatagcgcttatAAAGACTGTAGTGACGAGTTC
AACACTGAAGGTTTAACTAAGGAACTGTATACAAATGATGGTGTTGATCT
TTTTCTACTCCACCCGAAAATTGATACTAAACACCTAAAATTCAACCGCA
ATTTTAATGGCCATGATTATGAACGTTGGCAAGTTAAAAACGTTAATCTG
GAGTTTTATGATGATAATAACGACGCTATTGTTTTGGGGATACCTAAAAT
AAATGCTGGGTGGctattttggtcaaattttacGCGTTTGAAATTTGAAT
CTAAGAAGATCGTAAATTAAgaaagaacaagaaaatgaatggaaaatgaa
aatgaaagatttggaaaacgaacacaaaattaaaatgttacaaaaggagg
taaaaatAGCCGAGATGGagaaagtaatgaaagaaaatgaagaaaccata
cagaaaatgagagctgaaatgaaaaCTGTTAATGAGCAGGCAGTCAAAAA
AGAAAGTGCCCGGCTGGATACTCCTGTGAAAGCATTAACCGACATTGATC
GTATGGTATGGGGTGCCAATTATTTCATCCAAGGGATTTCACATGGTCCA
AAGCTGTACGAATCATACGAGAAGTGGTACGAAAGGATTTCATTGTTAAT
GGAGAATAAAAAGTTGTATGTCGCAACCGAATTCTTGTTCAttagaaaaa
agtttgataaacaTCATAAAGTTTTGCATTTTGTGTCgaaaagaaaatat
agcgcttatAAAGACTGTAGTGACGAGTTCAACACTGAAGGTTTAACTAA
GGAACTGTATACAAATGATGGTGTTGATCTTTTTCTACTCCACCCGAAAA
TTGATACTAAACACCTAAAATTCAACCGCAATTTTAATGGCCATGATTAT
GAACGTTGGCAAGTTAAAAACGTTAATCTGGAGTTTTATGATGATAATAA
CGACGCTATTGTTTTGGGGATACCTAAAATAAATGCTGGGTGGctatttt
ggtcaaattttacGCGTTTGAAATTTGAATCTAAGAAGATCGTAAATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000142_pilon | genome | sc0000142_pilon:4079..9369 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 397-1125:4563 |
| Aaloc | 1-393:1 |
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