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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000322_pilon:107903..112796+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_006440 ID=XLOC_006440|Name=XLOC_006440|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4894bp|location=Sequence derived from alignment at sc0000322_pilon:107903..112796+ (Clytia hemisphaerica_ch_hm2_pilon)
atgcgactaaaagAATCTATTGGTATTGCCATATTGTTATTATTgggctt
ttattttttttactctgGTAATGATACTGTTGATTTCACTGATGAAAATC
CACCCAAAACTTCCAAAGCAATAGAAAATGTGAAGTTAGTTGAAAAAGAA
CGAAGATATGAGCCATACGAGACAAAAAAGAAGGTTGTTGATGAAGTTGC
AGCAAAGAAAGGTATATTATGATGAATTGTTTGACAATATTTCATGATGA
CCCATTGATCATCAAGTAGATCTAAATCTACAGTATTTTCATAACCTTAT
TTGTAAGGATTTAGTGAGGTTCTCACCGGGGGTgtcatttgattttaaaa
aatgcAGCCCAAAATCAGGACTTTAGAATTGGACCTAAAAAATGCAGAGA
GAAAAGTTTCATTATATTCAAACGAAATATCAACCCCGGTCTAACGGTGT
ATTTTCTTGAAGATCTTTGTCCATTTTGAAGCAAAGattggtcagatttt
ccaaaattttaccTGGAAACTCCATACTTTTTCGCATTTCGACTCGTACG
GCAGTGTACCTTGGGAAGCCTGAAAAACTCACGCATTTAACAAGGTCCAC
GCCGTGATCTGGAGAGTGGAGATATAATGGCTAAGGAGGCGCAATTGTGG
TTTAcgctgacggaaaaaaattcgattttcatttcatcattttcatttcG
TTGAAATGACGCTATTTCAGACTGACTTTGACCAGAAACGAAGCTATTGA
ATGTGTGAGCCGTGATAGATGTTTTATTCATTTGAAGCAAGTAAGGGGGT
CATGGCAcccgaacttcaaattttgaaaaacgaggaaataaccaaaattc
tcaatacagtgtgttccgcaaaaaagtatactaaaaaaatcgaattatga
aaaaaaaactttttaaaggttttatttttacataagtgtttccgtttcat
atcagacacatatttcatatcaggacagtgtcttgttaatattatattat
gctgatatagcaaaagcaaaaaaatgttttgcttttCCTCTTTCTAGTTT
GCTTGAAGCTAAAACAAAGACTTTTTGCAATGAAATTTTCACATAAACTT
TTAATCGATAGCTcttttttatgtaattttaataaaattttggtGGAGAT
TaaaaaaagtcgagatgaaaaaattttcaaagcaaaaagctAATTAACTT
TTGACTGCTGATAGCTCTCttttatgtcatttttataaaattttccattt
taatGGTCAAACCTATACAAATTTTTCGCTGATGAAAAGCTGATTGAATT
CTTTCAGCAATGGAAAGAAGAGGATTTCTTCTTTCTGCTGCATATAAGAT
TGTGGGAGGCTTGGAAAACCCGAGGTTAGAGAGACCTGAGTTAGAAAAAC
CCGATATATCTATCTTAGATAGATATACTcgaaaaagtgaaaactcactt
ttaaaagaactttttgaGGTACGGTAGATAgataaagtttttgacttttt
ttgaatttatgatGTCATGTTGGTCGTAGCCAATGTATCTTACCGTTAAA
CATATTTTGGCACAAATCATtagacaaaaaaaatcagaatgcCAGTCGTT
CCTTTATCAAACTTGATATAGGCTTACCTTACACTAATAGGGAATAGGGA
AATGATATTTTCTTGCATATCTGTCTCAATAACGATTCACTTTTGACGTA
CTCTGTACCAGCTTGTGTCTAACGTATAACGTAGCGTAACTCTACGGAaa
tgaactttgaaattttctattaAGCCTGTTTAAGACAACCTTTGGTGTTT
GAATTGAATGAAAGGGTGGGAAATAATTATCAGATGGGCATCTCAAATAC
TATTACTTTCAGCTCGAAAAATATAGGTGAAGCCGACATCTCGGCGTAAC
CGTTTTGCGGTAATATTACTAGAATATGTAGTGACGTAACTCTCCCTTTA
TTGTTTCAGGTACGGTCGATCGAGCAACGACAAGTCTTCACGATTCACTT
GTGTTCCCTTCAACTGCAAATGATTTCACTTCAAAATTAGAATACGCTTA
TTCAAAGAGTGGACAAGACTTGAAAGTGTTGCAAAAAGAAGTAGAAGAAA
GACGATCGAAGCTTGTACGTAGTCCACTGTATGGTGAAGATCAATCGTGT
AAAAATAACGATCGAATCGCTGGACTTACCAAATTGTTTGATGCATGGGC
ACATATGGCAAAATTGTTTaacattgaatattttttgacatatGGATCGC
TAATTGGAGCGGAGAGAGATCGTaagttcaaaaaaaattctttaaaccTT
TTAACCTGGACTGAAAATATTTGGTGCGATATCATGATTTTAAAACCAAT
CTTCATTCACTTTTTCatcttaatttttcttcttgttcATCTTTCgatat
tcaaaaaaagttaacaTTTCCGATGATGCCCCCTAGATAAGTTGCAGTTC
AATTGCTAAACTTTGTTGACAGTGGCCAACCCGCCTCAAAGaaatctcaa
aacaaaacaatgttTGTGactgtaataaaaattttttgaaaatttttttg
ttttaaaaacctatttgtaaatgttttctttCCCGTCATTTGAGATGGGA
CCACtagaaactttttcatcaaagtgaAACCTTCTGcgtttttcagtttt
caaatgtttctgtttgatgaaaagttttttaaagtagCCCCAGACCTTAA
AAAGTAAAGTGTCTATCAGAAGAGTGGTGGGGAAACACAATTTGGGTAAA
CTGGGGAGACAAATTTCGAATATTatgattttggcgccccctatgAAATA
TAATTATCTTGGAAAAATTACGCGGGCGAAGCGAGCAGGAAAATTTTGGG
gcattttctctctttttggccgaaaactgccaTACCTTACCGgggaaaaa
tgtcgggggaaagtgaagaaaattttgagggggtgacgaaatttcccccc
gacgaatttttttcCCGATATTTTATCATCCGACCAAAACTTATACCCGA
ttttttttATccccaaccaaaacttttacccgattttttaaaccccaacc
aaaattaaaattcaatttttttacacctttattaaccgaaattggggctt
taaacgtcgaattacgaCTAcgagatcttttttcgagctctttttcgagc
tagtgaaagaaaccatttcatttggacaatttagttgggtgaaagtgact
aaattgtaaattcaggtgacgaaatttttccccaacgaaaaaaaacccga
ctaaataaaactcaaaacaaaGAAGTGCCGTAAATAGTAATCAGAGGTGT
TTATTTTGGCGCCCCCTCAAACAAATCGGCCGcttgggggggggaggggg
gcacTACCCCCTGCCCCCTGTCACCACGCTACTAATGTTTGTAAACTTTT
GAGACATGATTTCTATTGCAACATGTAATGCACCTTTCACTGGACTTTCT
GAGGATTTAGcattaatacaataataactGGCTAAGAGGTCAGTACAGGA
AATATTGACCGCAGCCAAAGTAttaatgatatgcaccactatAATGTCTT
TCACAGACCCAATAGCCAAtcggttgcaagtgacgtaattgactgatttt
acgtcacttacaaccagtCAGGTTGTTTGGTCCGTGATTTAATGTCAGAA
GGCATTGCTATGTTCCATATCATGATTAGATCACTATAGAGCCAATCAGA
ACAACGTATTTCAACTGTATTGGACCGCTTACATTACAGCTCGTTAATAA
AGCTTTGTATATATCCAttatgacacccctgtctcacagccccggtggaa
cttttacctcagtggggataaaaattcctattgaaatctcaatggggata
aaaatttctttgttccaaggttaaaaaatccagtggggatggttttggag
tgcaatttttaaacattggatCTCGAATGGGGATGACATGAAAGTCaaat
tcccagtggggctgaaatttcagggtattttcctaaCGGGGACGAAACTT
TTGCCTAATTTCCCAATGGGGCTTGGGTCCCAACAGGTCTATggcacagg
ggtgtattatgaaaattttgttttaatgatGAGCGCGTGGAGAAAGTTCA
GACGGAATTCTGGACAAAGAAACTTCAAATGAGGCGCtatattctttaaa
atagtTTGGTTAatagtgaagttaagtaaatcggtaaaatcacgacgacg
aacgaaaatttaacagggtagcgagtttcaaccaatcaattttcgtattt
tgACTCGCCTATTCAATTTTCGTCCGTCGTTTGGATTATCCTGGTATATT
TAGCCTCAGTGATAACTATTCTAAATATCTACTATTCTAAATATAATTTC
CATTATTACTACAGGTAACATCATCCCGTATGATTTAGACACTGACATTA
TGATGCCAGAAGATGACGTgccaaaacttcaaaaaatgataGATGATAAT
TTCTCAGTCAGTGATAACAAAATCCACCTTCGAATCCATCCAGAATATAA
GACACATTGGCGAAAACGTACCAAAATTTGTTGTAATGGCCAGATCAGCC
GTGGACCAAGTAGTAACACGTGCTGGGATCAATGTGCAGTACCCAATCCT
CTAGGTCGTCTCATATTAGGCCCAGTATTGCATATAGGAATTACAGGTTA
CAAAGTGATTAAGAATCATACCGTTTTGAAAATGACTTGTCATGAGGAAT
ATGGTTTTAAAACTGAGTATAGTTGGAAAGATTTAGCACCTCGGGATTGT
GAATTTCTTGGGCATAAGACATACTGTCCAACAAATGCCAATTTGATAAA
CACAGAAGTCTATGGTGAATATTGGACAGATCCTCATAAGAAATGCATAA
ATGGTGTTTGGACTAAAACAAGCAGAccacaaaagaatttttaa Coding sequence (CDS) from alignment at sc0000322_pilon:107903..112796+ >XLOC_006440 ID=XLOC_006440|Name=XLOC_006440|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2106bp|location=Sequence derived from alignment at sc0000322_pilon:107903..112796+ (Clytia hemisphaerica_ch_hm2_pilon)
atgcgactaaaagAATCTATTGGTATTGCCATATTGTTATTATTgggctt
ttattttttttactctgGTAATGATACTGTTGATTTCACTGATGAAAATC
CACCCAAAACTTCCAAAGCAATAGAAAATGTGAAGTTAGTTGAAAAAGAA
CGAAGATATGAGCCATACGAGACAAAAAAGAAGGTTGTTGATGAAGTTGC
AGCAAAGAAAGatgcgactaaaagAATCTATTGGTATTGCCATATTGTTA
TTATTgggcttttattttttttactctgGTAATGATACTGTTGATTTCAC
TGATGAAAATCCACCCAAAACTTCCAAAGCAATAGAAAATGTGAAGTTAG
TTGAAAAAGAACGAAGATATGAGCCATACGAGACAAAAAAGAAGGTTGTT
GATGAAGTTGCAGCAAAGAAAGGTACGGTCGATCGAGCAACGACAAGTCT
TCACGATTCACTTGTGTTCCCTTCAACTGCAAATGATTTCACTTCAAAAT
TAGAATACGCTTATTCAAAGAGTGGACAAGACTTGAAAGTGTTGCAAAAA
GAAGTAGAAGAAAGACGATCGAAGCTTGTACGTAGTCCACTGTATGGTGA
AGATCAATCGTGTAAAAATAACGATCGAATCGCTGGACTTACCAAATTGT
TTGATGCATGGGCACATATGGCAAAATTGTTTaacattgaatattttttg
acatatGGATCGCTAATTGGAGCGGAGAGAGATCGTACGGTCGATCGAGC
AACGACAAGTCTTCACGATTCACTTGTGTTCCCTTCAACTGCAAATGATT
TCACTTCAAAATTAGAATACGCTTATTCAAAGAGTGGACAAGACTTGAAA
GTGTTGCAAAAAGAAGTAGAAGAAAGACGATCGAAGCTTGTACGTAGTCC
ACTGTATGGTGAAGATCAATCGTGTAAAAATAACGATCGAATCGCTGGAC
TTACCAAATTGTTTGATGCATGGGCACATATGGCAAAATTGTTTaacatt
gaatattttttgacatatGGATCGCTAATTGGAGCGGAGAGAGATCGTAA
CATCATCCCGTATGATTTAGACACTGACATTATGATGCCAGAAGATGACG
TgccaaaacttcaaaaaatgataGATGATAATTTCTCAGTCAGTGATAAC
AAAATCCACCTTCGAATCCATCCAGAATATAAGACACATTGGCGAAAACG
TACCAAAATTTGTTGTAATGGCCAGATCAGCCGTGGACCAAGTAGTAACA
CGTGCTGGGATCAATGTGCAGTACCCAATCCTCTAGGTCGTCTCATATTA
GGCCCAGTATTGCATATAGGAATTACAGGTTACAAAGTGATTAAGAATCA
TACCGTTTTGAAAATGACTTGTCATGAGGAATATGGTTTTAAAACTGAGT
ATAGTTGGAAAGATTTAGCACCTCGGGATTGTGAATTTCTTGGGCATAAG
ACATACTGTCCAACAAATGCCAATTTGATAAACACAGAAGTCTATGGTGA
ATATTGGACAGATCCTCATAAGAAATGCATAAATGGTGTTTGGACTAAAA
CAAGCAGAccacaaaagaatttttaaGTAACATCATCCCGTATGATTTAG
ACACTGACATTATGATGCCAGAAGATGACGTgccaaaacttcaaaaaatg
ataGATGATAATTTCTCAGTCAGTGATAACAAAATCCACCTTCGAATCCA
TCCAGAATATAAGACACATTGGCGAAAACGTACCAAAATTTGTTGTAATG
GCCAGATCAGCCGTGGACCAAGTAGTAACACGTGCTGGGATCAATGTGCA
GTACCCAATCCTCTAGGTCGTCTCATATTAGGCCCAGTATTGCATATAGG
AATTACAGGTTACAAAGTGATTAAGAATCATACCGTTTTGAAAATGACTT
GTCATGAGGAATATGGTTTTAAAACTGAGTATAGTTGGAAAGATTTAGCA
CCTCGGGATTGTGAATTTCTTGGGCATAAGACATACTGTCCAACAAATGC
CAATTTGATAAACACAGAAGTCTATGGTGAATATTGGACAGATCCTCATA
AGAAATGCATAAATGGTGTTTGGACTAAAACAAGCAGAccacaaaagaat
ttttaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000322_pilon | genome | sc0000322_pilon:107903..112796 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 526-1053:4367 |
| Aaloc | 214-522:1962 |
| Aaloc | 1-210:1 |
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