XLOC_006438 (mRNA) -

Overview


Name	XLOC_006438
Unique Name	XLOC_006438
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000322_pilon:168433..171207-
coding sequence from alignment at sc0000322_pilon:168433..171207-

mRNA from alignment at sc0000322_pilon:168433..171207-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_006438 ID=XLOC_006438|Name=XLOC_006438|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2775bp|location=Sequence derived from alignment at sc0000322_pilon:168433..171207- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGATAGAGAGAGTACATACGTGGCAGCAACAATGAATATTTTTCA
TCAGCAGAAAAACTACCCTACGCAACAGCAGAAAAATGGATTCAAACAAC
AACTCTTACGTGAGAAATCTACCAAATGCTTACTTGATTTATTTCACAAA
AAGTTTCCAACAAATCCTGTGATGTTGTATCAAGAATTGTCACAGACAAA
ACACAAGAGAAAGTTGGATAAATTAAAATTGAATGACGATCAATATGATC
TTGTTTATACAGCATCACAACAAACAGATTCAACACAATTTGATATCACT
TTGCTTTTTCTTTTGATACGAACATTATGTGGTCACAAGACACCCTCCAA
TGGTTGGTATGAAGAACCAGATGTCAACGATGTTGATGACATTGCAAATG
CTCTTCGTTTGAAACTCGAAAGAAATCGAATGCAGCATGGTCAGCTATCA
ATCTCAACAGTAGAGTATCGAAGATCGTTTCAGTATGTAAAAAAGCCTCT
ATTAGCTCTTGGATGCTCGCAGAACGACCTGAACGACTTACTACCCTCTT
TTGAATATAATCCACCTCAACCGAACGTGAATTTCACCGGACGAGACGAC
GAATTAAAGGAGATCAATGATATTTTTAAACTCAAGAAAGCCTGCAATGT
CGTTATCACAGGGATTCCAGGTGTTGGGAAAAGCGAAACTGCAAACCATT
ATTACGTCACCCATCAAACTGATTACGACCACGTGATCAAAATCAATGTA
GATAACATCGAAAATGATTTCAAAAATGTTGCCACTATTTTAAAATTGGA
CGAGAAGACGAATATCCAAGTCATTACAGCTTTACTGAAAACATACTTCC
AAAACGAAATGGTCCTTTATATCTACGATAATTGTACCGCGGTTGAGCAG
TTGACCAAATATCTCGATCCAGGTCACCATAACTTGATCACCACTCAAAT
ACAACATTGGGGAGCTGGGTATGAAATAGTGACTATTGATAAATGGTCAG
AACAAAGCGCCACCAAGTTTCTTAAGAGCCAATTGAAAACAGCTGATCCA
AAAGAATTGTCTGAATTATCGAAAGAGTTGGAGTTCCATCCATTAGGACT
TCAGCATGCAGTAGCCTCGATAACCCAAACTCAATTACCGATTAATGAAT
ACCTCGATGAGCTAAGAAAACATAAGGTTGATATGTTGTCTGAAAAAGTA
GCACTTGGTTATGGAATTAGAACGTCAGTCTTTGTTTCGTTCTTCATAAC
AATTGAAAGGATTGAACGAGAGAGTCCGGAGGTGATGAAACTTTTGTCTT
TGTTTGCAATTCTCGATGGAACTTTTATGTTGGAGGAGTTTCTTAAAAGG
TGTTATGAGACAAAAACGGAATACAATAAAGCCAAACGTATCTTGTTTAA
TTATTCAATCATCCAAGCTAAGCAACAAATGACTGAATTCACCAACAAAA
AAGTCAACTATCTAACCGTCCATTCCCTCTATCAGGAGGCAGTTAAGATC
TACATCACTAAAAACAGAGCATTACAAAAAACACTAGAGCAGTTTATTGA
GATGTTTTCATCCGAGAAGTGGGTGTCTGTTGATAGAACCTCAGAATACA
AATTATGGCTAAACCACCTCCAGCACCTTTGGGAGCAAGATTGTTACAAA
GATATCATTGTCAGTCAATTATCAAACTATCCAGCGGTTCTAATATTTTC
GCCTTCGGAATGTTTTCTCAAAGACATCGCAAGGCGAATTTATGACTCAA
CAAAAAACGACTTTAAAAACCCAGTATCTTACTACCTGGATTATTGTTAT
GCTGGTCAAGAACTGGCATATTGGGAAAACTTTGAGCAACGAGTGAATGA
AAATCTTGAAGAAAGCCCAGTGAAAAGGAATTTGTTAGAATGCATAACAA
ATGCGAAAGCAGTGCTAAACACTGACAACAGTGAAAATATATTAAGAAAA
TTTGTTGTTTGTTTTCTAAATGGCCATTTTGAACAGGTGCCCAGCTTCTT
ACAAATACTATTTGCTGCTCCTAATTTAGAGATGAACTTTTTTCGAAGCA
TCTGTTATAAAGAAACACAAGAGTTTGATAAAGCTTTGGATTTACTTTAC
ACGATATCAGATTATAAACATGAAGAATCGAGTGCTAAAGTCCAAATCGG
CTGTTGTATGATCTTAAATGGAGAAATTCAAAAAGGGATGAAAGTGATAG
AAGAATCAGAGCCTTTGTGTAATGAATCAATATGCGATGCTGGGCGAGCA
TGTTTCGATGTTGGTTTGTTTGATGAAAGTAACAAATACTTCAAAAGGTG
GCTCGCAAGCTCACCAATTCCTTGTACCGCGATTGCTGTTGACGCGTTCT
GCAAAATACTGATGTTACCCAATAATCTACCGGTGGATTCTCTCTATTCT
GTGATAATAAGGATGCGTGCACATGACCCGACTATTTGCTTCAAAATCCG
CGGTCTGATACTCCTCTACTGTCTGCATGTAAAACATGATGAAGTTTCAA
TGGCTGAACAAGTTGCAATGAATTTTTCGTACGCAGAGATTGAAGAAAAG
AGATACACGAGTAATATTTTTCGGGAGGCATTTATCCTGGCTGACCATTG
GCAAAAAACTTGTCGGTTTTATAAAGCGCTGGTTGTTTATCGCATGATTG
ATGAGTTAGGTGATGAAATTGACGATCATGAACAAATATGTGTTGAGCTT
GATTGGGATTTGCTTGACGTGGATGAACATATCGATTTTTGTATTGTAAT
GTTGAGAAAAATATTTCATTTTTAA

Coding sequence (CDS) from alignment at sc0000322_pilon:168433..171207-

>XLOC_006438 ID=XLOC_006438|Name=XLOC_006438|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5550bp|location=Sequence derived from alignment at sc0000322_pilon:168433..171207- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGATAGAGAGAGTACATACGTGGCAGCAACAATGAATATTTTTCA
TCAGCAGAAAAACTACCCTACGCAACAGCAGAAAAATGGATTCAAACAAC
AACTCTTACGTGAGAAATCTACCAAATGCTTACTTGATTTATTTCACAAA
AAGTTTCCAACAAATCCTGTGATGTTGTATCAAGAATTGTCACAGACAAA
ACACAAGAGAAAGTTGGATAAATTAAAATTGAATGACGATCAATATGATC
TTGTTTATACAGCATCACAACAAACAGATTCAACACAATTTGATATCACT
TTGCTTTTTCTTTTGATACGAACATTATGTGGTCACAAGACACCCTCCAA
TGGTTGGTATGAAGAACCAGATGTCAACGATGTTGATGACATTGCAAATG
CTCTTCGTTTGAAACTCGAAAGAAATCGAATGCAGCATGGTCAGCTATCA
ATCTCAACAGTAGAGTATCGAAGATCGTTTCAGTATGTAAAAAAGCCTCT
ATTAGCTCTTGGATGCTCGCAGAACGACCTGAACGACTTACTACCCTCTT
TTGAATATAATCCACCTCAACCGAACGTGAATTTCACCGGACGAGACGAC
GAATTAAAGGAGATCAATGATATTTTTAAACTCAAGAAAGCCTGCAATGT
CGTTATCACAGGGATTCCAGGTGTTGGGAAAAGCGAAACTGCAAACCATT
ATTACGTCACCCATCAAACTGATTACGACCACGTGATCAAAATCAATGTA
GATAACATCGAAAATGATTTCAAAAATGTTGCCACTATTTTAAAATTGGA
CGAGAAGACGAATATCCAAGTCATTACAGCTTTACTGAAAACATACTTCC
AAAACGAAATGGTCCTTTATATCTACGATAATTGTACCGCGGTTGAGCAG
TTGACCAAATATCTCGATCCAGGTCACCATAACTTGATCACCACTCAAAT
ACAACATTGGGGAGCTGGGTATGAAATAGTGACTATTGATAAATGGTCAG
AACAAAGCGCCACCAAGTTTCTTAAGAGCCAATTGAAAACAGCTGATCCA
AAAGAATTGTCTGAATTATCGAAAGAGTTGGAGTTCCATCCATTAGGACT
TCAGCATGCAGTAGCCTCGATAACCCAAACTCAATTACCGATTAATGAAT
ACCTCGATGAGCTAAGAAAACATAAGGTTGATATGTTGTCTGAAAAAGTA
GCACTTGGTTATGGAATTAGAACGTCAGTCTTTGTTTCGTTCTTCATAAC
AATTGAAAGGATTGAACGAGAGAGTCCGGAGGTGATGAAACTTTTGTCTT
TGTTTGCAATTCTCGATGGAACTTTTATGTTGGAGGAGTTTCTTAAAAGG
TGTTATGAGACAAAAACGGAATACAATAAAGCCAAACGTATCTTGTTTAA
TTATTCAATCATCCAAGCTAAGCAACAAATGACTGAATTCACCAACAAAA
AAGTCAACTATCTAACCGTCCATTCCCTCTATCAGGAGGCAGTTAAGATC
TACATCACTAAAAACAGAGCATTACAAAAAACACTAGAGCAGTTTATTGA
GATGTTTTCATCCGAGAAGTGGGTGTCTGTTGATAGAACCTCAGAATACA
AATTATGGCTAAACCACCTCCAGCACCTTTGGGAGCAAGATTGTTACAAA
GATATCATTGTCAGTCAATTATCAAACTATCCAGCGGTTCTAATATTTTC
GCCTTCGGAATGTTTTCTCAAAGACATCGCAAGGCGAATTTATGACTCAA
CAAAAAACGACTTTAAAAACCCAGTATCTTACTACCTGGATTATTGTTAT
GCTGGTCAAGAACTGGCATATTGGGAAAACTTTGAGCAACGAGTGAATGA
AAATCTTGAAGAAAGCCCAGTGAAAAGGAATTTGTTAGAATGCATAACAA
ATGCGAAAGCAGTGCTAAACACTGACAACAGTGAAAATATATTAAGAAAA
TTTGTTGTTTGTTTTCTAAATGGCCATTTTGAACAGGTGCCCAGCTTCTT
ACAAATACTATTTGCTGCTCCTAATTTAGAGATGAACTTTTTTCGAAGCA
TCTGTTATAAAGAAACACAAGAGTTTGATAAAGCTTTGGATTTACTTTAC
ACGATATCAGATTATAAACATGAAGAATCGAGTGCTAAAGTCCAAATCGG
CTGTTGTATGATCTTAAATGGAGAAATTCAAAAAGGGATGAAAGTGATAG
AAGAATCAGAGCCTTTGTGTAATGAATCAATATGCGATGCTGGGCGAGCA
TGTTTCGATGTTGGTTTGTTTGATGAAAGTAACAAATACTTCAAAAGGTG
GCTCGCAAGCTCACCAATTCCTTGTACCGCGATTGCTGTTGACGCGTTCT
GCAAAATACTGATGTTACCCAATAATCTACCGGTGGATTCTCTCTATTCT
GTGATAATAAGGATGCGTGCACATGACCCGACTATTTGCTTCAAAATCCG
CGGTCTGATACTCCTCTACTGTCTGCATGTAAAACATGATGAAGTTTCAA
TGGCTGAACAAGTTGCAATGAATTTTTCGTACGCAGAGATTGAAGAAAAG
AGATACACGAGTAATATTTTTCGGGAGGCATTTATCCTGGCTGACCATTG
GCAAAAAACTTGTCGGTTTTATAAAGCGCTGGTTGTTTATCGCATGATTG
ATGAGTTAGGTGATGAAATTGACGATCATGAACAAATATGTGTTGAGCTT
GATTGGGATTTGCTTGACGTGGATGAACATATCGATTTTTGTATTGTAAT
GTTGAGAAAAATATTTCATTTTTAAATGTTTGATAGAGAGAGTACATACG
TGGCAGCAACAATGAATATTTTTCATCAGCAGAAAAACTACCCTACGCAA
CAGCAGAAAAATGGATTCAAACAACAACTCTTACGTGAGAAATCTACCAA
ATGCTTACTTGATTTATTTCACAAAAAGTTTCCAACAAATCCTGTGATGT
TGTATCAAGAATTGTCACAGACAAAACACAAGAGAAAGTTGGATAAATTA
AAATTGAATGACGATCAATATGATCTTGTTTATACAGCATCACAACAAAC
AGATTCAACACAATTTGATATCACTTTGCTTTTTCTTTTGATACGAACAT
TATGTGGTCACAAGACACCCTCCAATGGTTGGTATGAAGAACCAGATGTC
AACGATGTTGATGACATTGCAAATGCTCTTCGTTTGAAACTCGAAAGAAA
TCGAATGCAGCATGGTCAGCTATCAATCTCAACAGTAGAGTATCGAAGAT
CGTTTCAGTATGTAAAAAAGCCTCTATTAGCTCTTGGATGCTCGCAGAAC
GACCTGAACGACTTACTACCCTCTTTTGAATATAATCCACCTCAACCGAA
CGTGAATTTCACCGGACGAGACGACGAATTAAAGGAGATCAATGATATTT
TTAAACTCAAGAAAGCCTGCAATGTCGTTATCACAGGGATTCCAGGTGTT
GGGAAAAGCGAAACTGCAAACCATTATTACGTCACCCATCAAACTGATTA
CGACCACGTGATCAAAATCAATGTAGATAACATCGAAAATGATTTCAAAA
ATGTTGCCACTATTTTAAAATTGGACGAGAAGACGAATATCCAAGTCATT
ACAGCTTTACTGAAAACATACTTCCAAAACGAAATGGTCCTTTATATCTA
CGATAATTGTACCGCGGTTGAGCAGTTGACCAAATATCTCGATCCAGGTC
ACCATAACTTGATCACCACTCAAATACAACATTGGGGAGCTGGGTATGAA
ATAGTGACTATTGATAAATGGTCAGAACAAAGCGCCACCAAGTTTCTTAA
GAGCCAATTGAAAACAGCTGATCCAAAAGAATTGTCTGAATTATCGAAAG
AGTTGGAGTTCCATCCATTAGGACTTCAGCATGCAGTAGCCTCGATAACC
CAAACTCAATTACCGATTAATGAATACCTCGATGAGCTAAGAAAACATAA
GGTTGATATGTTGTCTGAAAAAGTAGCACTTGGTTATGGAATTAGAACGT
CAGTCTTTGTTTCGTTCTTCATAACAATTGAAAGGATTGAACGAGAGAGT
CCGGAGGTGATGAAACTTTTGTCTTTGTTTGCAATTCTCGATGGAACTTT
TATGTTGGAGGAGTTTCTTAAAAGGTGTTATGAGACAAAAACGGAATACA
ATAAAGCCAAACGTATCTTGTTTAATTATTCAATCATCCAAGCTAAGCAA
CAAATGACTGAATTCACCAACAAAAAAGTCAACTATCTAACCGTCCATTC
CCTCTATCAGGAGGCAGTTAAGATCTACATCACTAAAAACAGAGCATTAC
AAAAAACACTAGAGCAGTTTATTGAGATGTTTTCATCCGAGAAGTGGGTG
TCTGTTGATAGAACCTCAGAATACAAATTATGGCTAAACCACCTCCAGCA
CCTTTGGGAGCAAGATTGTTACAAAGATATCATTGTCAGTCAATTATCAA
ACTATCCAGCGGTTCTAATATTTTCGCCTTCGGAATGTTTTCTCAAAGAC
ATCGCAAGGCGAATTTATGACTCAACAAAAAACGACTTTAAAAACCCAGT
ATCTTACTACCTGGATTATTGTTATGCTGGTCAAGAACTGGCATATTGGG
AAAACTTTGAGCAACGAGTGAATGAAAATCTTGAAGAAAGCCCAGTGAAA
AGGAATTTGTTAGAATGCATAACAAATGCGAAAGCAGTGCTAAACACTGA
CAACAGTGAAAATATATTAAGAAAATTTGTTGTTTGTTTTCTAAATGGCC
ATTTTGAACAGGTGCCCAGCTTCTTACAAATACTATTTGCTGCTCCTAAT
TTAGAGATGAACTTTTTTCGAAGCATCTGTTATAAAGAAACACAAGAGTT
TGATAAAGCTTTGGATTTACTTTACACGATATCAGATTATAAACATGAAG
AATCGAGTGCTAAAGTCCAAATCGGCTGTTGTATGATCTTAAATGGAGAA
ATTCAAAAAGGGATGAAAGTGATAGAAGAATCAGAGCCTTTGTGTAATGA
ATCAATATGCGATGCTGGGCGAGCATGTTTCGATGTTGGTTTGTTTGATG
AAAGTAACAAATACTTCAAAAGGTGGCTCGCAAGCTCACCAATTCCTTGT
ACCGCGATTGCTGTTGACGCGTTCTGCAAAATACTGATGTTACCCAATAA
TCTACCGGTGGATTCTCTCTATTCTGTGATAATAAGGATGCGTGCACATG
ACCCGACTATTTGCTTCAAAATCCGCGGTCTGATACTCCTCTACTGTCTG
CATGTAAAACATGATGAAGTTTCAATGGCTGAACAAGTTGCAATGAATTT
TTCGTACGCAGAGATTGAAGAAAAGAGATACACGAGTAATATTTTTCGGG
AGGCATTTATCCTGGCTGACCATTGGCAAAAAACTTGTCGGTTTTATAAA
GCGCTGGTTGTTTATCGCATGATTGATGAGTTAGGTGATGAAATTGACGA
TCATGAACAAATATGTGTTGAGCTTGATTGGGATTTGCTTGACGTGGATG
AACATATCGATTTTTGTATTGTAATGTTGAGAAAAATATTTCATTTTTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_006438	XLOC_006438-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000322_pilon	genome	sc0000322_pilon:168433..171207 -

Properties


Property Name	Value
Aaloc	1-2775:2776

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XLOC_006438 (mRNA) -