XLOC_006063 (mRNA) -

Overview
NameXLOC_006063
Unique NameXLOC_006063
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000045_pilon:1036332..1041857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006063 ID=XLOC_006063|Name=XLOC_006063|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5526bp|location=Sequence derived from alignment at sc0000045_pilon:1036332..1041857+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGaagaagatttttctttttatcgtATATCTATCACAAATCACCTTTAC GCAAGCACGCTGGGAGGTCAACAGACAAAGAACGCATGATGATATCATAG AGAAGCCGCGGACCGCTTCATGTGACCGATTGGAGTACAACCGTCTGGAT GAAGGTGATTGTAGATGCCCACGAAAGATTTTTCACGTTTACAGCAAAAC AGAGTATGGTTGTTATGATGCTGAAGCATTTTGCGAGACAGAGCTTTCAA GGAAATGGTTGGTTAAAGGTGACTTTTATTAGCTGTCATTAAAATAAAAG GATTTTTCAGTTTAATTATGGAACGCAGCTTCCGTAGTAATAGAACGAAG CATTCCAGAAGCAAGACCTCTTTATTTGGTTTGAGCATTTCTTTACATTG TACGCGAGTCTTTGTTACTAGAAATAGttagaaagtttttaaaatctatG CAGATTTGGTAAAGCCATTCATATACACATTCCTTCCCACTAGTGTGTTT GCTttattaaccctatttttatcaggggggggtgttttccaccaggctgg cactcttttgttaatagctcactgaaaattttttttaacactctgaaagt ttttgacttttaatataatcctattagcagcatgtataccaaattttaca attatacaccgaccagatcaggttttatgactttttagttcaggcatatc ataaaatccagctaaaaccgtgtaaaatcccaaaatcttaaatttagcat aacttctGATCTAGTTATccaattgacttcaaaatttgacaggttttagg tatcaataataaattttgaaaaatatttttaaaattttcaaaaattgctg acctcatcaaaaattacgtcattgttttttgaaaaaatttactcattttc tgcatggattttaaacctcgattttattagtatgttaaaaaccggcagat atgttaaagatattctttttggcttttggaaattcaaaacagaactgaaa aatctccattcatTCAACTTTAAtagctattttattgaatagtacttttt cattggtcagcgataattgtgaaactttgtgatgacgtcatcacctttat gatgacgtcatcaattcaattttttttctatgaatTCCTTTTATAGTAGA AAAtatttgtgccaaatttcaagtccatacctttcctaaatcaaaagtta tgcaaggctggtggaaaacacccccccttgagaatacaaaatccgaaaaa gcctgataataatagggttaaacgTGACCCTCCAAGAGCAATGTTCACTA ATGAACAATTAAACTaattttttcgagttatggagtaaggtttataaggc attggtAACTGAATGCAAGCTTAAAACTAGTATTTAATCACACTGTATTT CTCCTTTTATATTATGGAAATATCATTACATTGTCATAAAAATTTGCTTT CTTTCATAAATTTTGTGGCCTTCTTGCCTACACTACTGGAAGGGACCATA ACAATCTTTCGAATTACCTTACTATTACCTAACCGTTTCACAAAATTTGA GCTGAGGTAATTTTCGATCGAAAACACTGCCTTTAAAAACTAAGTTCGCA CACGTTTTTCCTGCGTTACATAAATTATGTTCgagttaaaaatgttttct gACATAAATCTCACAGACAGAAGCTTGATCATTTAGAAGTTGTACGAAGA AAGTTAATCAAAATTTGTCGGAAATAAATACTTGTAACGAAGGGCATCTT TtaactattttgaaattttgtttccaGACTCGCGATGTCACCTTGCCAAC GGCATGCTATGGAAATACGAATCAAGAAACGGCAAGACAAATCAAATATT ACACTTCAATGCCGATCATTTGAATGACAACATGCACGCATGCGCAGTAG GAGATGAATCGAATTTGAAAGTCACCACAAGTTATTGGGATGAAGAAAAA GGTTGGAAGAGTGCTAATAGTGGTAATGATGGATCAATGAAATTGGGGAA ACTAAGAATGAGACCGGATTCAAGACAGGTGAGAGAAATAATGACTTTTA AGAGAAATTCCCTAGAAAGAGattttcttaagatttttttattctgaATG TGACACGTGACAAAACAAAGGATATTACAAATGAAACGAGATGCGAACTA AATAAAAAGAGCAAAACCAaacacacccctttctcacagatccactgaGA ACCTTTCCCAAtggaaaaattgtcaaaaatatcgTTCCCTgttgaaaatt atactccagTTTTTGTCCCCgcagaaaataatcagataagcaaatcctca ctataaaatattgtgctaatatttccatccccactgaattatctgtctaa aaaacaataaaattcaacTCCCCAGCCTTAAAAGGACATaaggaatatca atcccaatcgagttttggtccattatttttacccccaccggctgataaaa tcccataggtctgtgagaagggggtatgtAAATCAAGTGTACATCAAAGA ATTTAACTAAACTTCATCCCTTTTTGTAGGTCCAAATTTCAGCAAACATA GACCATGGTGTCGGATTGTTTCGAATCAAGATTCAGTGTCCACTAGAAGA AAGATTTGCTTTCTTTGTCCGAATCATTGGAAAAGGTAAGTTCTATTTCA AACCTTAGGATAACAGGGTCACCAAATGGTTTTGTAACTGATCAGAGCCT TTTCATCTGGATGGAATAGaaaaaaaTAGGCACCTTTTTGGTAGCATGGG TGCAGTTTCTTGTTCGCCAGACTGGAAATAATGTGAGAGTCTGATGTAAA AGATAgctctaaaatcatttttgcattAGATGTAATCTTATCGCGAGCAG TTCTTATAAGTAGTTTGAATGTTTTCTgatattaaatgtttttttataat tcctTAAAAAACTTCTACCCTCAATAAGTGGAAGTTATGTGTGAAATCAC CATTTATCCTAAATTTCTGTTTCCTTCCAGCGATCTACAAAACTTCTGGG CCATCTTTGAGGAAACTCACCAAATCAACAACACCTTCAACAGAGATGGT GGAAACACCTCCCCCACGTGAACCGAATATCGATTATGTTGGACCAGTCA CTCGATGGTTGAAACTGTTGCCAACAATCAAAGTATATCCGACACTACCA AAGACGAAACGTATTGAATACCCCAATGAGATTGTTGTTAAAACTACACA AAGAACTTTCACCTATCCATCAACCAAACAGTCCGTAAACAAAAACGAAA AGATGGAAATTACAAACTCCCCGAATGAGATTTTAGGAGACATTACACCA AAAATTACCAGCTCAGATTCAACAAACAAAGTTTCTGAAAACAATAACGG AAAGACAGAACCTACAAACTCTCCCAATGAGATTGTTGTAGAATCTTCTC CTCGGGTAGACTACGAAATCATGTCTCATCCACCAACCAAAGCTATTGGA AACAGTCTGATTGAGATGTCTTCACCAGAGATTGACTATTCAAATCGACC AACAGATTCTACAAAAgctgaacaaaaaaataacgTTGAGTTTACGTCCT TATTGTCAATTGAAAATGAACATCAATCAACAAAGATTCCTGGAGTTGGT GAAAGTAAAGAGCAGGCAAAAACTTCTTCTCCAAATATTGAATACAAATT AACAAGAGAAGCCAAAATTGATAACAATTCGATAGAGACAACCTCGAATT CTAATCACAGAGGAGAGATCAGTAACGGAAGGAAGACACCAACGAGAACT ACCAGCGTTGATGTAAACTCAATAGAGACATCATCCAGAACGGATCTTCC GATCACAAGACATCATCCAAACAAATCCATCAAAGAAGGTCATGCTATAG GTACAAACACTCTTACAGACAACAACGACATTGACTTAACGATTGACTTA GAAACACCAACTCCACATACTTCAAGAGTATTTGACAAATTAGCAATTcg tcaaaaaacaacaaaaataccTAGTAATCTGTTTACAAACTACAAAGACT TATCTAACAATTTGGAGAATCCTACGAAAGAAATTTCGACGGATGATATT TCAAATTGGAGACAAGTGGACAAAACCTTATCTCCAACCAGAACTTTAAA CAGTAAAGATAATGATTTGAGCAACAACTATGAAATTTCTCCAAATGACA ACATCCAAACGACgaatgacatttcaaaatggaCACAAGTTGACAAGACC TCATCTCTCACCAAAACTCCAAACATTAAAGATACTGActcaaacaaaaa cttgaaaatttctccaacaGACAATCTCAAAAAGACAAACGACATTTCAA AATGGACACAAGTTGACAAGACCTCATCTCTTACAGAAACTTCAAACAGA AAAGATATTAACTCAACCAACAACTTGGATATTTCTCCAACTGAAAGCAT CAAAGTTACTGATGATATTTCAAAATGGGTACCAATTGCAAAAACCTCAT CTCCAACCAAAACTTTAAATAACAAAGATATTGACTTGCCCAACAGCTTG GAGATTTCTTCAACAGACGACATCCAAACGacgaatgaaatttcaaaatg ggcACAAGTTGACAAGACCTCATCTccaacaaaaacttcaaacattaAAG ATACTGACgcaaatgaaaatttgaaaacctctccaacaaaaaataccaaa aatactgatgacaattcaaaaCGTACACAAGTTGACGAGACCTCATCTCT AACCaaaactccaaacaaaaaagataatggctcaaacaaaaacttgaaga tCTCTCCAACAGACAATCTCAAAAAGACTGATGAGAATTCAAAATGGACA CAAGTTGACGAGACCTCATCTCCAACAAAAAGCATTGACGCTTCGACTGA AACTCCAGAAGAATCTTTCTCGTCTTCTAATACTGAGGGTGGTTTCATCG ACTTATCTGATTTACTATGGGAATCAttaaaattctttgaagagaattAT GAAAGTACAACTGAACAACCTAATGAGCTAAGTTCCACGCAAATGCCAAC CACTgaagattttgaagatttctatACTTATTCTAGGGGCACTAAGAAAG CTACTACAGATTCGATACCGTTTGAGACAATACCAACAATTTTTGTAGAT TCTCACTCTTCAACTAAGAATTCTAACGTCAAAACTAATCCAACTATTTT AACAGAAACCACTGACTTTACAGAGATTAAGACAACTTCAACTTCCAAAG ATAAGACTCCATATTCAGTAAAACCTGAAACAACCGGAAATAATATTGaa attgattctaaaaatcCTACTGATACAATCACCGGAACGCCAGATCCAAT GAAAACAAGAGAACATATAACAGGAAAAACACTTACAGGTTCCTCAAACA ACCTATTGTTTGGTATTTCAACGGCAACTTTGTCACAATCACCAACTGAA ACTCCAGAAGAATCTTTCTCATCTTCTAACACTAAAAATCACTTCATCGA CTTATCCGATTTATTATGGGAATCATTAAAATTCTACGAGGAGAATTATG GAAGTACAACTGAACTACCTAATGAG

Coding sequence (CDS) from alignment at sc0000045_pilon:1036332..1041857+

>XLOC_006063 ID=XLOC_006063|Name=XLOC_006063|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6096bp|location=Sequence derived from alignment at sc0000045_pilon:1036332..1041857+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGaagaagatttttctttttatcgtATATCTATCACAAATCACCTTTAC
GCAAGCACGCTGGGAGGTCAACAGACAAAGAACGCATGATGATATCATAG
AGAAGCCGCGGACCGCTTCATGTGACCGATTGGAGTACAACCGTCTGGAT
GAAGGTGATTGTAGATGCCCACGAAAGATTTTTCACGTTTACAGCAAAAC
AGAGTATGGTTGTTATGATGCTGAAGCATTTTGCGAGACAGAGCTTTCAA
GGAAATGGTTGGTTAAAGATGaagaagatttttctttttatcgtATATCT
ATCACAAATCACCTTTACGCAAGCACGCTGGGAGGTCAACAGACAAAGAA
CGCATGATGATATCATAGAGAAGCCGCGGACCGCTTCATGTGACCGATTG
GAGTACAACCGTCTGGATGAAGGTGATTGTAGATGCCCACGAAAGATTTT
TCACGTTTACAGCAAAACAGAGTATGGTTGTTATGATGCTGAAGCATTTT
GCGAGACAGAGCTTTCAAGGAAATGGTTGGTTAAAGACTCGCGATGTCAC
CTTGCCAACGGCATGCTATGGAAATACGAATCAAGAAACGGCAAGACAAA
TCAAATATTACACTTCAATGCCGATCATTTGAATGACAACATGCACGCAT
GCGCAGTAGGAGATGAATCGAATTTGAAAGTCACCACAAGTTATTGGGAT
GAAGAAAAAGGTTGGAAGAGTGCTAATAGTGGTAATGATGGATCAATGAA
ATTGGGGAAACTAAGAATGAGACCGGATTCAAGACAGACTCGCGATGTCA
CCTTGCCAACGGCATGCTATGGAAATACGAATCAAGAAACGGCAAGACAA
ATCAAATATTACACTTCAATGCCGATCATTTGAATGACAACATGCACGCA
TGCGCAGTAGGAGATGAATCGAATTTGAAAGTCACCACAAGTTATTGGGA
TGAAGAAAAAGGTTGGAAGAGTGCTAATAGTGGTAATGATGGATCAATGA
AATTGGGGAAACTAAGAATGAGACCGGATTCAAGACAGGTCCAAATTTCA
GCAAACATAGACCATGGTGTCGGATTGTTTCGAATCAAGATTCAGTGTCC
ACTAGAAGAAAGATTTGCTTTCTTTGTCCGAATCATTGGAAAAGGTCCAA
ATTTCAGCAAACATAGACCATGGTGTCGGATTGTTTCGAATCAAGATTCA
GTGTCCACTAGAAGAAAGATTTGCTTTCTTTGTCCGAATCATTGGAAAAG
CGATCTACAAAACTTCTGGGCCATCTTTGAGGAAACTCACCAAATCAACA
ACACCTTCAACAGAGATGGTGGAAACACCTCCCCCACGTGAACCGAATAT
CGATTATGTTGGACCAGTCACTCGATGGTTGAAACTGTTGCCAACAATCA
AAGTATATCCGACACTACCAAAGACGAAACGTATTGAATACCCCAATGAG
ATTGTTGTTAAAACTACACAAAGAACTTTCACCTATCCATCAACCAAACA
GTCCGTAAACAAAAACGAAAAGATGGAAATTACAAACTCCCCGAATGAGA
TTTTAGGAGACATTACACCAAAAATTACCAGCTCAGATTCAACAAACAAA
GTTTCTGAAAACAATAACGGAAAGACAGAACCTACAAACTCTCCCAATGA
GATTGTTGTAGAATCTTCTCCTCGGGTAGACTACGAAATCATGTCTCATC
CACCAACCAAAGCTATTGGAAACAGTCTGATTGAGATGTCTTCACCAGAG
ATTGACTATTCAAATCGACCAACAGATTCTACAAAAgctgaacaaaaaaa
taacgTTGAGTTTACGTCCTTATTGTCAATTGAAAATGAACATCAATCAA
CAAAGATTCCTGGAGTTGGTGAAAGTAAAGAGCAGGCAAAAACTTCTTCT
CCAAATATTGAATACAAATTAACAAGAGAAGCCAAAATTGATAACAATTC
GATAGAGACAACCTCGAATTCTAATCACAGAGGAGAGATCAGTAACGGAA
GGAAGACACCAACGAGAACTACCAGCGTTGATGTAAACTCAATAGAGACA
TCATCCAGAACGGATCTTCCGATCACAAGACATCATCCAAACAAATCCAT
CAAAGAAGGTCATGCTATAGGTACAAACACTCTTACAGACAACAACGACA
TTGACTTAACGATTGACTTAGAAACACCAACTCCACATACTTCAAGAGTA
TTTGACAAATTAGCAATTcgtcaaaaaacaacaaaaataccTAGTAATCT
GTTTACAAACTACAAAGACTTATCTAACAATTTGGAGAATCCTACGAAAG
AAATTTCGACGGATGATATTTCAAATTGGAGACAAGTGGACAAAACCTTA
TCTCCAACCAGAACTTTAAACAGTAAAGATAATGATTTGAGCAACAACTA
TGAAATTTCTCCAAATGACAACATCCAAACGACgaatgacatttcaaaat
ggaCACAAGTTGACAAGACCTCATCTCTCACCACGATCTACAAAACTTCT
GGGCCATCTTTGAGGAAACTCACCAAATCAACAACACCTTCAACAGAGAT
GGTGGAAACACCTCCCCCACGTGAACCGAATATCGATTATGTTGGACCAG
TCACTCGATGGTTGAAACTGTTGCCAACAATCAAAGTATATCCGACACTA
CCAAAGACGAAACGTATTGAATACCCCAATGAGATTGTTGTTAAAACTAC
ACAAAGAACTTTCACCTATCCATCAACCAAACAGTCCGTAAACAAAAACG
AAAAGATGGAAATTACAAACTCCCCGAATGAGATTTTAGGAGACATTACA
CCAAAAATTACCAGCTCAGATTCAACAAACAAAGTTTCTGAAAACAATAA
CGGAAAGACAGAACCTACAAACTCTCCCAATGAGATTGTTGTAGAATCTT
CTCCTCGGGTAGACTACGAAATCATGTCTCATCCACCAACCAAAGCTATT
GGAAACAGTCTGATTGAGATGTCTTCACCAGAGATTGACTATTCAAATCG
ACCAACAGATTCTACAAAAgctgaacaaaaaaataacgTTGAGTTTACGT
CCTTATTGTCAATTGAAAATGAACATCAATCAACAAAGATTCCTGGAGTT
GGTGAAAGTAAAGAGCAGGCAAAAACTTCTTCTCCAAATATTGAATACAA
ATTAACAAGAGAAGCCAAAATTGATAACAATTCGATAGAGACAACCTCGA
ATTCTAATCACAGAGGAGAGATCAGTAACGGAAGGAAGACACCAACGAGA
ACTACCAGCGTTGATGTAAACTCAATAGAGACATCATCCAGAACGGATCT
TCCGATCACAAGACATCATCCAAACAAATCCATCAAAGAAGGTCATGCTA
TAGGTACAAACACTCTTACAGACAACAACGACATTGACTTAACGATTGAC
TTAGAAACACCAACTCCACATACTTCAAGAGTATTTGACAAATTAGCAAT
TcgtcaaaaaacaacaaaaataccTAGTAATCTGTTTACAAACTACAAAG
ACTTATCTAACAATTTGGAGAATCCTACGAAAGAAATTTCGACGGATGAT
ATTTCAAATTGGAGACAAGTGGACAAAACCTTATCTCCAACCAGAACTTT
AAACAGTAAAGATAATGATTTGAGCAACAACTATGAAATTTCTCCAAATG
ACAACATCCAAACGACgaatgacatttcaaaatggaCACAAGTTGACAAG
ACCTCATCTCTCACCAAAACTTCAAACAGAAAAGATATTAACTCAACCAA
CAACTTGGATATTTCTCCAACTGAAAGCATCAAAGTTACTGATGATATTT
CAAAATGGGTACCAATTGCAAAAACCTCATCTCCAACCAAAACTTTAAAT
AACAAAGATATTGACTTGCCCAACAGCTTGGAGATTTCTTCAACAGACGA
CATCCAAACGacgaatgaaatttcaaaatgggcACAAGTTGACAAGACCT
CATCTccaacaaaaacttcaaacattaAAGATACTGACgcaaatgaaaat
ttgaaaacctctccaacaaaaaataccaaaaatactgatgacaattcaaa
aCGTACACAAGTTGACGAGACCTCATCTCTAACCaaaactccaaacaaaa
aagataatggctcaaacaaaaacttgaagatCTCTCCAACAGACAATCTC
AAAAAGACTGATGAGAATTCAAAATGGACACAAGTTGACGAGACCTCATC
TCCAACAAAAAGCATTGACGCTTCGACTGAAACTCCAGAAGAATCTTTCT
CGTCTTCTAATACTGAGGGTGGTTTCATCGACTTATCTGATTTACTATGG
GAATCAttaaaattctttgaagagaattATGAAAGTACAACTGAACAACC
TAATGAGCTAAGTTCCACGCAAATGCCAACCACTgaagattttgaagatt
tctatACTTATTCTAGGGGCACTAAGAAAGCTACTACAGATTCGATACCG
TTTGAGACAATACCAACAATTTTTGTAGATTCTCACTCTTCAACTAAGAA
TTCTAACGTCAAAACTAATCCAACTATTTTAACAGAAACCACTGACTTTA
CAGAGATTAAGACAACTTCAACTTCCAAAGATAAGACTCCATATTCAGTA
AAACCTGAAACAACCGGAAATAATATTGaaattgattctaaaaatcCTAC
TGATACAATCACCGGAACGCCAGATCCAATGAAAACAAGAGAACATATAA
CAGGAAAAACACTTACAGGTTCCTCAAACAACCTATTGTTTGGTATTTCA
ACGGCAACTTTGTCACAATCACCAACTGAAACTCCAGAAGAATCTTTCTC
ATCTTCTAACACTAAAAATCACTTCATCGACTTATCCGATTTATTATGGG
AATCATTAAAATTCTACGAGGAGAATTATGGAAGTACAACTGAACTACCT
AATGAGAAACTTCAAACAGAAAAGATATTAACTCAACCAACAACTTGGAT
ATTTCTCCAACTGAAAGCATCAAAGTTACTGATGATATTTCAAAATGGGT
ACCAATTGCAAAAACCTCATCTCCAACCAAAACTTTAAATAACAAAGATA
TTGACTTGCCCAACAGCTTGGAGATTTCTTCAACAGACGACATCCAAACG
acgaatgaaatttcaaaatgggcACAAGTTGACAAGACCTCATCTccaac
aaaaacttcaaacattaAAGATACTGACgcaaatgaaaatttgaaaacct
ctccaacaaaaaataccaaaaatactgatgacaattcaaaaCGTACACAA
GTTGACGAGACCTCATCTCTAACCaaaactccaaacaaaaaagataatgg
ctcaaacaaaaacttgaagatCTCTCCAACAGACAATCTCAAAAAGACTG
ATGAGAATTCAAAATGGACACAAGTTGACGAGACCTCATCTCCAACAAAA
AGCATTGACGCTTCGACTGAAACTCCAGAAGAATCTTTCTCGTCTTCTAA
TACTGAGGGTGGTTTCATCGACTTATCTGATTTACTATGGGAATCAttaa
aattctttgaagagaattATGAAAGTACAACTGAACAACCTAATGAGCTA
AGTTCCACGCAAATGCCAACCACTgaagattttgaagatttctatACTTA
TTCTAGGGGCACTAAGAAAGCTACTACAGATTCGATACCGTTTGAGACAA
TACCAACAATTTTTGTAGATTCTCACTCTTCAACTAAGAATTCTAACGTC
AAAACTAATCCAACTATTTTAACAGAAACCACTGACTTTACAGAGATTAA
GACAACTTCAACTTCCAAAGATAAGACTCCATATTCAGTAAAACCTGAAA
CAACCGGAAATAATATTGaaattgattctaaaaatcCTACTGATACAATC
ACCGGAACGCCAGATCCAATGAAAACAAGAGAACATATAACAGGAAAAAC
ACTTACAGGTTCCTCAAACAACCTATTGTTTGGTATTTCAACGGCAACTT
TGTCACAATCACCAACTGAAACTCCAGAAGAATCTTTCTCATCTTCTAAC
ACTAAAAATCACTTCATCGACTTATCCGATTTATTATGGGAATCATTAAA
ATTCTACGAGGAGAATTATGGAAGTACAACTGAACTACCTAATGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_006063XLOC_006063-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045_pilongenomesc0000045_pilon:1036332..1041857 +
Properties
Property NameValue
Aaloc1861-3048:4339
Aaloc628-1857:2983
Aaloc520-624:2530
Aaloc271-519:1780
Aaloc1-267:1