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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000281_pilon:281905..287112+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_006000 ID=XLOC_006000|Name=XLOC_006000|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5208bp|location=Sequence derived from alignment at sc0000281_pilon:281905..287112+ (Clytia hemisphaerica_ch_hm2_pilon)
TATCTCATCcatattttggatgttttgcTTCTGGCTTCCGTCATTTCGGC
CACCAAACGATTCTGGACCCAAAAACAGGATAATGACCTTGCTGAATTTC
AACCTGCATTCTTAGAATTAGGTAAGACTTCCCTCGATAGAATATAAAca
agattatgtatcggaggatatcgagggcgacggtaagtgaactCGACGCA
AAGtcgatgtacggctctatatcgcctttgaacgcctaaacagacgacgg
tattttggtgtttttaccgtcgtcgagtaAAGTGGATGGCGATTtcggag
acatgtcaactttgctttataccgtcctcctcgatttatctcgaattcAT
AAAATCAGTATAGATTAAGAATCTCTGCCAATCAATTTTTACTTAGTCCG
ATTCACAAGTTTCTACTTCCTATGAATAACAAGCTTTTTCGGATGACCAG
AACCTAATAGCATGCGATTTGCAAGGTATTAATCCTAAGGTTTCCTGAAA
ATCATTATTTACTTAAATTCTCAGGGATATACTCCTTATAAAGATATCAC
ACCTATATACACCTACGCCTACTATATCACACACGCCCCGTCTCCAGTTA
TTAGTGAGTTAATGTATGTGTATGTATGCGAtttgaggacgacggtaaat
cagcacttttaccgtcttcGATTTTTCGGGCTAGAATTAcgagtttttcc
aaatcgcttcagtcactccaccgtcctcaaaagtgcaaagaCATAAACTC
ACTATTATTTGCACGAAACTCCGAGTGTCGGAAAATAAACTATTATTTac
aactttaagtttcatggcGCCCGTATGGACGACAATCATCCGCTAAATTT
AAGTACGGtttgtatttttcttcttcttttcaatagCTGATTGTCCTTTT
CAAATTGAACCTGTCGGATGCTTCAAAGACAAAAAAGATGATCGAGCACT
ACCTGATGAAGTAAGTCAAACACTGATATAAAGTTTCaaggttaaaggtt
ttatttataCATAattttcatatcagacacatatttcatatcaggacatt
gtcttactattgttatattatgctggtataagcaaaaaatgtttattgct
tttcctctttctgaccaatcttgctccacatccgtgtcaatccaatgtga
aaaagcttgtgtaTTAAAACACTTAGAGTGCAATTTGTCTCATCTTTTGC
TGATTTCaaaccttacagtgcactttgggaagcttgggaaatataccctt
aagggccgcacgtatggtaggtcatttaccttgagtgctcCCACCCCAGG
TGTATATGGCACCTGCGTACCGTCCTTCACTAGGCCTAAAGTCATACAAA
TTCTTTTTATCTCATTCACCTATGTACacaatataattttttcaacCCAT
TTCCCTCCACAATAGATTTGTAATGGGCGTGACCCCACTCGTGATCAACA
CACTAAATTCTTGGCACAAATCCAATGGACCAATTACAATCATTGGTTGG
CTAACTTCATTTGCTAGTAAGTTTAACTTATCCAgcttgcacacaacgtt
gtttcaacgttcacatttaacgttatatggacgttgtgaacgttagataa
acgttgaaacaacattgtgtgccagaTGGGTATCTACTAGACTAGAGTCT
GAACCTGACTGAACtctgctttttgataatttctaaAGATGCTGAGTCCA
GTCCTTACTGGCGCCATCCAGTCAAGCATGGACACCAGGCTAAGTTCAAC
TTTGAGAACATTGAGATATTCAAAGCAGTATTAATGCTACACACCTATAA
ACCCTTAGCAGCCCGGTTGGCTTTTTAGAAGACTGGCGGTGAATTTACAA
GGAATATTTTGTTCTCGGCAAACGGCATTTTAAGACTGCCTCTAAAACAA
ACCAAGCAATTTCGCGCCAAAACTTCATGCCATTTAAGTTTCGTTACCAG
TCCCTGACCGCGCAGCTAAGGCTTGTGTATTGAATATTTCGTTATAGTGT
CTCGAACCCTATATCTTGAACGTGTCCATTATacgaatacactcttctcg
agatgcataaatttattgttgtcctcgttttcaaacagatttcattgcta
taaaattatacatttgaaccaatttaaatttccaaaaggcaatcattaac
tctaaaacaaaagtacttgaaattcaaaatgtctcatgaggtgtaaacaa
cacaattatcattgtgaatatgtaattttatagcaatgaaatctgtttaa
AAACGAGgataacaataaatttatgcatctcgagaagagtgtattcttat
attttatttctcacatCCTTCATAACTTGATTAATTCCTATAAGTGTTCG
AGTTACAAATTTCATTTAAGATGTTTTTTAAGTTTTCCAACCGAGCGCAT
TTAACTCTTTATCTTTCTTTATTGAATTCTTAGCGGTGCAcaaaaattgt
tcgaaaagaaacccgacataaaaactgactacattggcgtccaataCTAT
GGTAAagcattttatattttttgcaaaaattttggtTCTTCGAATTCCtg
ttcgaacctctattattcgaacctttctgtaattcgaacttctattattc
gaacctCTCTGTAACtcaaacttttattattcgaacttttctgtaattcg
aacttctattattcgaacctATCTGTAACTCAAAGTTTTATTATTCGaac
ttttctgtaattcgaacctctataaattgaacttttctgtaattcgaact
tctattattcgaacttttctgtaattcgaacttttattattcgaactttt
ctgtaattcgaacctttctgtaattcgagctaaaatattggtcccctcag
ctggaaagtgtctaaaattactctctgtactacacaactttctctaattc
gaagaaaaattttgttctcATGAAAACCGAATAAGAGAGATATCATTTTG
TTCTCAAAATTTCTCATACTTTACCCAATCAacacaaaatgtaaaaaaat
atgaaaaattaggAAAAGGAACTAATCTATAtgcttttttctataagaat
agtgtactttggatgagggtcaagtattactaagaaagtgccaaaattga
gtatgaaatattcttacttttttagacttgactttttacaaacatgagaa
atgatcattttgagagttttggacttttgaatgaacatttaGAGCTAACA
TTACATTTCTACCCCAAAGTTTATattcaagtctaacaaaggaagcagat
acaaaatagaaaatcactgtattcttatcaaattctgtgaaactcaccct
agagggtatttttagggtattcttacgatttggccatattctaaaaaata
ttctaaaaaagcgtgtatatgaAACAAACAAAACGCCAATGCAACGTTTG
AAACCGAATTATAAAATCACAAAGAAAAACGTATGAAACCCTGAACCCCT
AAAACTTCCTATCTTATTCAGGTGAGATTTGGGCAAACATGGGAAACGAG
AAAACGACACACGACAAACATGGAAAAGCGATGACGTGCTGTGACGGCGA
CTACAAGGACGTCACATCAGAAGAACCTAACCAATGTGGTCTTTTTGCCG
GAAAATCTGTCACAAATTACGTCTACAAAGTTACGAATTACAAATCAGTA
GAGAAAATCGATAACTGTCCCTATTTCCAATCGAAAGGCTGTTGGGCGGA
CAAAGAGCCATGGCATAAGGATATTGAAAAACGTCCTATGGAAGTGTACG
CTATGAATGAGAGGGATCCTTACGCTAATAACTGGAACAAAAGAATGATT
GATTGGGGAAATTGGGGTAAAGGGTATTTGGGAGATTTGTTGTGCCGATG
TGCTGACTTAGCTAAGAAATCAAACAAGAAGTtcttttccattcaatttt
atGGTAAGTTCATATactgttttataagaacaaattttattagaacatgA
GATTCAACTTTGGGCCGAAGCAAgaataaattaagaacaatccaagcttc
agatttcagaaattactagaAAAGGCTGATTTTTAGtaactttttaaatc
ttttaagCTAAGATTTAGGAAGACAtttaaaatgaagaaagaaattcatg
acatttatgacgtaatgttttctacggaaagaccccggtttttgccaata
ATGGCAAaatttatacaacttttgtctagtttaaatttgccactactggc
tacggggtatttccgtagaaaacatgacgccgtgaatatcatgaataact
tGATTGAGTTTTCATTCTTTTGTAGGTGAGTGTTGGATTACGAACGTGGA
ACCGAGGTTCAAAGAAGATGGCGCATCGACACAGTGTGTAGATGGAGAAT
GGGGCGTCTGTGATATGAACAATGGAATGGGAAAGAAATGCAGAAATCAT
TTCTGTGCTGGAAAAGCTGAAGCTAACAAAGTTTATCAACTCATGCAAGG
TAATccaattaataaataaattcaagtGGAGTCACCCTAGTACATACAAT
ATGTGAAGAAAAGTTCGCTTTTCTGAGATTCCGACCGCGGGGGAAAAAGG
GGTACGGAGATGTGCCGCCTCTCACACacacactccatcgcagcggtcgg
tttgaagaATGTCTTCgtacagaaaagaaaaataccaaaatggaaaaatc
agtccctcgtagggtacctattttggggaaatttggaaaaaatctatgga
aaattttgagaaaatttttggaattcaGTCACTCAggcattcagggtcac
ttttttcaaaaaaacgagtctcacgtagggtccatttttcgaatttcagc
ggcacacccccgtcggtcggtaAGGGTTGTAcccccccTGGGTTCCGATC
CCCCTTATAGACAGTTTAGGCCATTTTTCACAATctttatttttaacaaa
aagacTAAATTCAATCCCCTGGTATATGGCAGACCGTATATGGCAGACCG
TCTCTTATTTAATGTGTTTTTACAAGAGTGTATAGTGTGCTTCCAGTCTT
TTCTTAGATATATAATCAACTAATGCAGTCTAATGTAAATGCGACTATTT
TCCATGTTTCAGGACCACACATGTGCCAATCATCTCCATGCAAAAACGAA
GGAAAATGTTTGACAGTTGGTACAAACGATTTCGTTTGCCAATGTAAACC
AGGATATAGTGGAGAGGATTGCGGAATTGAAACACCTAAAGATGCACCCT
CACATTGA Coding sequence (CDS) from alignment at sc0000281_pilon:281905..287112+ >XLOC_006000 ID=XLOC_006000|Name=XLOC_006000|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2232bp|location=Sequence derived from alignment at sc0000281_pilon:281905..287112+ (Clytia hemisphaerica_ch_hm2_pilon)
TATCTCATCcatattttggatgttttgcTTCTGGCTTCCGTCATTTCGGC
CACCAAACGATTCTGGACCCAAAAACAGGATAATGACCTTGCTGAATTTC
AACCTGCATTCTTAGAATTAGTATCTCATCcatattttggatgttttgcT
TCTGGCTTCCGTCATTTCGGCCACCAAACGATTCTGGACCCAAAAACAGG
ATAATGACCTTGCTGAATTTCAACCTGCATTCTTAGAATTAGCTGATTGT
CCTTTTCAAATTGAACCTGTCGGATGCTTCAAAGACAAAAAAGATGATCG
AGCACTACCTGATGAACTGATTGTCCTTTTCAAATTGAACCTGTCGGATG
CTTCAAAGACAAAAAAGATGATCGAGCACTACCTGATGAAATTTGTAATG
GGCGTGACCCCACTCGTGATCAACACACTAAATTCTTGGCACAAATCCAA
TGGACCAATTACAATCATTGGTTGGCTAACTTCATTTGCTAATTTGTAAT
GGGCGTGACCCCACTCGTGATCAACACACTAAATTCTTGGCACAAATCCA
ATGGACCAATTACAATCATTGGTTGGCTAACTTCATTTGCTACGGTGCAc
aaaaattgttcgaaaagaaacccgacataaaaactgactacattggcgtc
caataCTATGCGGTGCAcaaaaattgttcgaaaagaaacccgacataaaa
actgactacattggcgtccaataCTATGGTGAGATTTGGGCAAACATGGG
AAACGAGAAAACGACACACGACAAACATGGAAAAGCGATGACGTGCTGTG
ACGGCGACTACAAGGACGTCACATCAGAAGAACCTAACCAATGTGGTCTT
TTTGCCGGAAAATCTGTCACAAATTACGTCTACAAAGTTACGAATTACAA
ATCAGTAGAGAAAATCGATAACTGTCCCTATTTCCAATCGAAAGGCTGTT
GGGCGGACAAAGAGCCATGGCATAAGGATATTGAAAAACGTCCTATGGAA
GTGTACGCTATGAATGAGAGGGATCCTTACGCTAATAACTGGAACAAAAG
AATGATTGATTGGGGAAATTGGGGTAAAGGGTATTTGGGAGATTTGTTGT
GCCGATGTGCTGACTTAGCTAAGAAATCAAACAAGAAGTtcttttccatt
caattttatGGTGAGATTTGGGCAAACATGGGAAACGAGAAAACGACACA
CGACAAACATGGAAAAGCGATGACGTGCTGTGACGGCGACTACAAGGACG
TCACATCAGAAGAACCTAACCAATGTGGTCTTTTTGCCGGAAAATCTGTC
ACAAATTACGTCTACAAAGTTACGAATTACAAATCAGTAGAGAAAATCGA
TAACTGTCCCTATTTCCAATCGAAAGGCTGTTGGGCGGACAAAGAGCCAT
GGCATAAGGATATTGAAAAACGTCCTATGGAAGTGTACGCTATGAATGAG
AGGGATCCTTACGCTAATAACTGGAACAAAAGAATGATTGATTGGGGAAA
TTGGGGTAAAGGGTATTTGGGAGATTTGTTGTGCCGATGTGCTGACTTAG
CTAAGAAATCAAACAAGAAGTtcttttccattcaattttatGGTGAGTGT
TGGATTACGAACGTGGAACCGAGGTTCAAAGAAGATGGCGCATCGACACA
GTGTGTAGATGGAGAATGGGGCGTCTGTGATATGAACAATGGAATGGGAA
AGAAATGCAGAAATCATTTCTGTGCTGGAAAAGCTGAAGCTAACAAAGTT
TATCAACTCATGCAAGGTGAGTGTTGGATTACGAACGTGGAACCGAGGTT
CAAAGAAGATGGCGCATCGACACAGTGTGTAGATGGAGAATGGGGCGTCT
GTGATATGAACAATGGAATGGGAAAGAAATGCAGAAATCATTTCTGTGCT
GGAAAAGCTGAAGCTAACAAAGTTTATCAACTCATGCAAGGACCACACAT
GTGCCAATCATCTCCATGCAAAAACGAAGGAAAATGTTTGACAGTTGGTA
CAAACGATTTCGTTTGCCAATGTAAACCAGGATATAGTGGAGAGGATTGC
GGAATTGAAACACCTAAAGATGCACCCTCACATTGAGACCACACATGTGC
CAATCATCTCCATGCAAAAACGAAGGAAAATGTTTGACAGTTGGTACAAA
CGATTTCGTTTGCCAATGTAAACCAGGATATAGTGGAGAGGATTGCGGAA
TTGAAACACCTAAAGATGCACCCTCACATTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000281_pilon | genome | sc0000281_pilon:281905..287112 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 976-1119:5065 |
| Aaloc | 802-972:4278 |
| Aaloc | 370-798:3474 |
| Aaloc | 301-366:2435 |
| Aaloc | 199-297:1416 |
| Aaloc | 127-198:889 |
| Aaloc | 4-123:1 |
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