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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000112_pilon:206261..212937+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005784 ID=XLOC_005784|Name=XLOC_005784|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6677bp|location=Sequence derived from alignment at sc0000112_pilon:206261..212937+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACGTGTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGCA
TGCGCTATTGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCAA
CAGACCATAAATATCTAGCCTACCTTAGTGGCGGAATCCTAGCTTCGGCT
GCAGTATTATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTG
GAACCTACCAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAG
GTCACAAAAACCAACACCAACTACACTTATTGTTAGACGACTATGTGAAA
ACTTACGGCGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGC
AACGACAGACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCaa
actttgaaaacagaaagGTTTGTTTCTTTACGTGAAAAATTTACCTATTC
ACAACTATTCGACCTCTTTTGAGTAAAGTGCAAATAATTGGATGAAGGCC
AAGAATGGACCATTCAAATGACATCGAGGGCTTCGTTTATGTAAGGTGGT
TGCcctgtatttttaaatatttgaccCACTTCCTTGGCTTTTAATGAGAA
AAATCCCTTTCACAATTTCCAGCTTAGTGATCTTTTGGTATTGATACGCA
ATACGCCTTTTCTACTAAAGATCCCCTAATTTTCTTTACCACATTTACAA
GCTTagaccatagtcattataaaaaacaccggtctggcaatgtattgtta
tagctttttgttcaattttctttttttacaaataaaagacaagttgcgat
ctgcatactttttgatcacgttaccaaagtctcctcttgggattggtcta
ttttctaatcacatgatcaaaaagtttgcaaaataaatcgattttggtaa
gctctatcttttaacaataagaagagacaaaagccttccagaccagtatt
tttataatgactatgcttAGACGGCCCGACACGTTTTCAATTGGGCCCTT
TAATATGTATTTTGTTCACCTTACAGTTCTTTGTCGAGATGCCGTGGCCT
TGTCAACACATGGTAACCATGGCAAAAGGAGCAAAGGCCAAAATGATCAG
AAACCTTTTGAAAGCTGTATTAGACgccaaaagtatcaaaaataaTTGGG
CTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCTTGAGGGACGCC
GCGTTAAACTTGCTAGAAGTTGATTCGACAAGGTAAaggcttttaatttt
ttttttttttttttttttttttatctatagtatatgtaacacgaacaaat
agtacaaaactaagggttcctaacctcccgcaaaaggaccaccagatcat
accgccaggaggaaggaacccaaactaagctaacaatagATTAATAAATC
AATTGAGAAatgcatggaaaaaaaatattactacagaggataaatactaa
caaaaaataaaaaacaaaaacaaaaagagcttgGAGAGCAGTTAaagtaa
aagactaaaataacggtcccccaaaacggccTGTATTacagataaatttt
attgttatactcaatatatcgtgattttggacaatgctaaaatcggggtc
gccataaagaagtattctacacaatgttttgggattaaatggaaacaagg
ttatgtcaagttgaagaaggctgtcaaacattaCAAGTCTGTcattagag
taatcagagcaatgcatcaaaaaatgctgtgttgtttctactgaattttg
tcgacagttgcagaaggggtcaactgtgtctgcaaaattatgcctgaact
tatgctcacgaagatgactgaaaccaacccttaatcggttaaggagaaca
acaccatcgttgtcactagctctgaaaattgagttagcactgggtctgag
aaatcggagaattgcttgcttgaaagacttaatagtgggaagatttcgta
tatgatctccgaggttattccattcatttatgcaaaaaggaaagaaagag
gcacgataacgctcggttctacaaaaaggtgcctcgagtggtggttttat
ccttcgccctgcattgcgttcttcctctcctctctggggaggaagaatat
tcTTTAAGGCTTTTAAAGGCTTTTAATGAGACGTTCATTTCTTGAATACT
TTTAGAAGTCTTAGCCCGGggtctaccttaagggaagaaattttcgcggg
aatgaACTTTTGCGGAACGAATTTTTGTGGAAATAAACTTTTGCGGAAcg
aattttcgcggaatttaatttcgcggttttttgacaaatctgcgaaatta
aatttcgcgaaacacgaatatttTTAGGATTTAAAGTTTAGCTTAAGGTA
GTTGGTTTGGATTTTTAAAATAGAATGAAGCAAGgcatttatttgaaaaa
agggTATTGAAAAGATGTGTTTCATGTTGGCGACTTCGTCAAATTCTCCT
AATCTACTTCACTGAACCCAAGGGCatcaaaaatcattaaaaaagtagAA
ATTAGCCAGAATTAGACTTTAGTCTGGAAGGGTTCTAGGTTCGTTGATAA
ACAGCCTATAAAATCTACCGCACGAAGAATAGTCAATCTGTCGTAAAAAT
GCGGcgcgaaaattaagttttttgtaTCTAAAAACAAGCTTAACTTTTAT
CGATTTATCTATCGATGTCTATAGTCATTTCTAAATATGTTTAGTTTAGC
AAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGATT
GCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACCTC
TTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATCAT
TGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCATC
AGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAAAG
AATCGCGAACCACAGGTAAGCGCCTGAGTAACTAGcatgctggcatccac
taacggattcttCTTCCTCATACTAACTGCAGTTTGGTAGAGGTCTGAGA
TTTAGATTACTGAGCAACCTCATCCCTAAGCATGGAGTGATTCACCTTCA
AGAAAAACTTTGTCCAAACAAATAACTTTGTGAGAGAATCACTACAGATT
ATgatttttcacgaaaaatagTTTTCTACCGAGTACGAGTAATGACTAAT
AGTCTCTATAAAATTGATTACAATTCAGTTGTTTTTATTGATGATGCAAC
GTTGGCTCGAAAGTATATGTTTAGACAAACGTGTAGTATACTCTTcgcaa
tttcatattttgcctGTTTGTctgtcaaataatttttttctatttggaaa
ACTACATACTTACAATCtggctctcccagtgtcgttcgagtgtcatggta
tacgccatggcttggcagctcgcgtctgtctagttgcagtgtctgtcagc
gccgtgattcctactctttcgtgggtaggacccatcccaaatgcattcgg
agggctatctatctatatctatatatctatctattataCTTACAATCAAC
CTACTTCCAAGACTATTAATATAAATATTTGTCAACAATCAATACTTTTG
CTTCTCTTTCTAGGATGTATTGGACGTTCTGTTAGCAGCACAATCCAAAG
ACTCCAACATCagcactgaaattctattaGCTCAGGCTATTGTTCTCCTC
ACTGTCGTCCACGCTTCAACCGCCACGACGATCTCCATAGCAACCTATTA
TATCGCCAAACACAAAGATGTACAAAGGAGACTACAACAAGAGATTGACA
GTATCTCAATGGAAGATGGATTTCCATCTTGGGAACATCTACATAAACAG
TTGCCATACCTTGGACAAGTTGTCAATGAAACTTTACGCCTCTACCCGTC
AGGTAAATATTCTATGTTTCTTTCATAGACGAGACAATattaatttaact
tttttttgttttacgggacgagatggagtttttactagctcctatttgat
ttgaaattaatAAGTTAATAAGTACAAACAATTACTAGACATAGGAAGGC
GGAATTCAAGGATAAATCAGGGAAGTCAGCGCTTATACTTACGTGTTTGA
AATACAggtgacgctctcttattcggtTTCAAGGGTttggatttttatcg
aataaagGGAGCTTATTGAATGGGAGAACGTCGTTTATGAAACTTTGTTG
TTGGCAGTGACTTTCAATATAATCAAACAATGGAGCGTATCTACAGAAGA
ACCTTAGAATtaggggacaagctggagttttttacaagctcttatttgat
ttggttggtcgttaaccagtaataaaacaattctgttacttttttctaaa
gaacgcgtcatctctatcacttcaaatgaccaattagtgaagtatcttgt
aaaaactcaacTCATCACAGAATTAGAGAGCGTAACGACCTCGtacaagt
tcgaattagagatagCCAACTGTACTTTCTTTTATTCAGCCTTTATGTTG
ATGCGTGAATGTACAAAGCCAACAACAGTCAATGGCATCTCCTTTGAAAA
AGGTGACGGAGTTCTCATCCCAACCTATTCGATGCATCGAGATCCTAAAG
TTTTCACTGATCCTGAACAATTCAATCCAGACCGGTTCGAGTAAGTCCAT
CAAAGCtcattttgaacttgaaaaaccCAGTGGAATACCAAAGTGTTGTC
AGCCAATATTTCACTGTACCCTAAGCTCCCAAATAAATGtctcccccgct
tattaagtcgAAAAGTTTTTGCCTATCTATCTAAGGTGAAGTCGTCCTtc
aggtttttttataaaatatcccATCATGGACCATCACTTCAGGATTGCTC
CCAAAGGGATAGAGAATGGTGTGATATTTCGGGAAATTTGCGATCGTTAT
CCTAATGCTGCTTGTGGATGTGAATATGGAAAGATGGAAAGATGGGTACC
CTCCCTAGGTAGTGACATTCGGAGAagggataaaattaaaaaggtttttt
gaaatttaggtGCAAATACGGAAAATAATTGAAACTTGAAAGGAATATAT
GAATCATAATTTTGTCCTTATATTTTATGCAGTTTTCCTTTTCCCTGTGA
GAAAATTTTCTTGCGCCTATTGTGAAAAATCACATCATCCAGTATCCAAC
CAGGATTACTCTGGGTGGGATAATGTTGGTGGGATATTTCTGGACATTTG
CGGTCGTATCCTAAAACAGCTATGTAATTTATAAAATATCAGTGGATGAA
ATTGATAGACCCCTCAAAGTGTTCGAAATTATGTACAGTTCCAGAATTGT
TGAGGTTTCAGAGTTTGTTGAATATAATATGTTTCAAAGTTATATCAATG
AGGATGTTTTGTAAGTGAAGTATTTTGTGGAGTATgtaaaattgtttatt
tttgatcagcttttggaaaaaatcccaAGGCCAAGAGAGTTAAAGGTGAG
AATATGTAGAGTctgtgtgaaaaattgaaaattaaaataagaaaagaacT
TTCTATGCTCTGGAGGTGGAGTATGCACAATATTTGCATATTTATTTGGT
AGACTTGAGCGCCCCAAGACTGTGCAATTGAATAGAGCTGTGGGAGAAAA
ATTCTGGTAGAATGTCTTTGGGGTGATAATAGACTAGAATTGCAGATTTT
ATGCAATGAAGACTGCTGTAGCAGAAGATCTTAATGTTAAAatgtgaaat
taaaatgaacaaCAGATGAGATGGAGACACCCCCACCAAGGGGGTGCCTG
GAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCAC
CCACCACTCCAACGCCCCCTTTCCTATTAGAACCACTAGTTTAGCTAACA
CAAGCTGAATTGCTTTTAGGCTGCGCGCATCTCcggttttgattttgata
tagtgGATGCTGCGTATCATGTATAAAATTTCCGTCCGAGATTTACCCTA
ATATTTACCCTGtttcaatttcatttaaaaagttataaaaattaGTGATT
GTATTAACATCTaatcattcaaatttttaattgaaatttgatgaaattta
aagatctaTCATATTACATATTACTTTATCAAgctaatcaattttcaaaa
attcaaaaacagaaagacggacgggaattttatacacgatatgCTGCTCC
GAGATCTAATAATTTCCAAAGGATCAAACTATTTCTATAATAAAGAGGAA
AGATAAAcatttatcaaatttggccaaatttgacgtagatttaaaaaatc
aaatgcAAAAACAAAGGTTTTTGTCGTATTAAAAGTTAAGGCCCTTTGGA
GAACTACCGGTATCTCGACCACGCTACTATAAGTATACTATCGTAGTCGG
CAGAGAACGTGTTCAAGATTCCCCATCTTTTGTAgagtaaaaactatttt
tacaCTTAGTTGTAAATGtagtttcaaaataattaaCTATTTTAGGACCA
AACCATCAAGACATTATTATCCGTTCGGTGACGGCTACCGTATGTGTCCG
GGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACTTAGCTTCGATgtt
gaaaaactttgatttgTCACTTGTTGACGAGAACCAAGAATTATGCGTCA
AATCATACATTTCAGCTCAAACCACAATGGCGGTGGATGAACCAATCCAA
ATTCGTGTACAAAAAAGACGTCATTAG Coding sequence (CDS) from alignment at sc0000112_pilon:206261..212937+ >XLOC_005784 ID=XLOC_005784|Name=XLOC_005784|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3132bp|location=Sequence derived from alignment at sc0000112_pilon:206261..212937+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACGTGTTCAGCAAATTTGGAGAAACACTCCACTCAGTCGATGCGCA
TGCGCTATTGAAATCAATCGGTCTTGAACAAATGATGTCAGATGCGCCAA
CAGACCATAAATATCTAGCCTACCTTAGTGGCGGAATCCTAGCTTCGGCT
GCAGTATTATTTGTCGGTAACCGTTTGTTTCATGATCGTCTTTCCAGTTG
GAACCTACCAGGACCGAAAAGTTCACTCCTGCCGATAGACCTGTTCAAAG
GTCACAAAAACCAACACCAACTACACTTATTGTTAGACGACTATGTGAAA
ACTTACGGCGAAACTTTCGCTTTTAATTACAAAGGACAGCCTGTTGTCGC
AACGACAGACGAGGATATCATACATAAAATATTATGGAAAGAATTCCCaa
actttgaaaacagaaagATGAACGTGTTCAGCAAATTTGGAGAAACACTC
CACTCAGTCGATGCGCATGCGCTATTGAAATCAATCGGTCTTGAACAAAT
GATGTCAGATGCGCCAACAGACCATAAATATCTAGCCTACCTTAGTGGCG
GAATCCTAGCTTCGGCTGCAGTATTATTTGTCGGTAACCGTTTGTTTCAT
GATCGTCTTTCCAGTTGGAACCTACCAGGACCGAAAAGTTCACTCCTGCC
GATAGACCTGTTCAAAGGTCACAAAAACCAACACCAACTACACTTATTGT
TAGACGACTATGTGAAAACTTACGGCGAAACTTTCGCTTTTAATTACAAA
GGACAGCCTGTTGTCGCAACGACAGACGAGGATATCATACATAAAATATT
ATGGAAAGAATTCCCaaactttgaaaacagaaagTTCTTTGTCGAGATGC
CGTGGCCTTGTCAACACATGGTAACCATGGCAAAAGGAGCAAAGGCCAAA
ATGATCAGAAACCTTTTGAAAGCTGTATTAGACgccaaaagtatcaaaaa
taaTTGGGCTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGCTCTTGA
GGGACGCCGCGTTAAACTTGCTAGAAGTTGATTCGACAAGTTCTTTGTCG
AGATGCCGTGGCCTTGTCAACACATGGTAACCATGGCAAAAGGAGCAAAG
GCCAAAATGATCAGAAACCTTTTGAAAGCTGTATTAGACgccaaaagtat
caaaaataaTTGGGCTCATTTTCAAGAAGCGAACCAGGACGTGGAAGAGC
TCTTGAGGGACGCCGCGTTAAACTTGCTAGAAGTTGATTCGACAAGTTTA
GCAAATGGATATATCATGCAGATCATCACCAAGATGGCATTTTCGCTTGA
TTGCTCCAACCAATCAGATCTCAACAAACAATTGGTCCAACTATCACACC
TCTTTACTAGACCTCCAACATGGCTTCAAAGCTGTTCCAGTCTCCCAATC
ATTGGAAACTTGTTGAAACTTTCCCCATGGGGATTTAACTCAAGTTTGCA
TCAGTTCATAAAGATTGCAACAGACATTGTTGTGGAAAGACGCAAAGAAA
AGAATCGCGAACCACAGTTTAGCAAATGGATATATCATGCAGATCATCAC
CAAGATGGCATTTTCGCTTGATTGCTCCAACCAATCAGATCTCAACAAAC
AATTGGTCCAACTATCACACCTCTTTACTAGACCTCCAACATGGCTTCAA
AGCTGTTCCAGTCTCCCAATCATTGGAAACTTGTTGAAACTTTCCCCATG
GGGATTTAACTCAAGTTTGCATCAGTTCATAAAGATTGCAACAGACATTG
TTGTGGAAAGACGCAAAGAAAAGAATCGCGAACCACAGGATGTATTGGAC
GTTCTGTTAGCAGCACAATCCAAAGACTCCAACATCagcactgaaattct
attaGCTCAGGCTATTGTTCTCCTCACTGTCGTCCACGCTTCAACCGCCA
CGACGATCTCCATAGCAACCTATTATATCGCCAAACACAAAGATGTACAA
AGGAGACTACAACAAGAGATTGACAGTATCTCAATGGAAGATGGATTTCC
ATCTTGGGAACATCTACATAAACAGTTGCCATACCTTGGACAAGTTGTCA
ATGAAACTTTACGCCTCTACCCGTCAGGATGTATTGGACGTTCTGTTAGC
AGCACAATCCAAAGACTCCAACATCagcactgaaattctattaGCTCAGG
CTATTGTTCTCCTCACTGTCGTCCACGCTTCAACCGCCACGACGATCTCC
ATAGCAACCTATTATATCGCCAAACACAAAGATGTACAAAGGAGACTACA
ACAAGAGATTGACAGTATCTCAATGGAAGATGGATTTCCATCTTGGGAAC
ATCTACATAAACAGTTGCCATACCTTGGACAAGTTGTCAATGAAACTTTA
CGCCTCTACCCGTCAGCCTTTATGTTGATGCGTGAATGTACAAAGCCAAC
AACAGTCAATGGCATCTCCTTTGAAAAAGGTGACGGAGTTCTCATCCCAA
CCTATTCGATGCATCGAGATCCTAAAGTTTTCACTGATCCTGAACAATTC
AATCCAGACCGGTTCGACCTTTATGTTGATGCGTGAATGTACAAAGCCAA
CAACAGTCAATGGCATCTCCTTTGAAAAAGGTGACGGAGTTCTCATCCCA
ACCTATTCGATGCATCGAGATCCTAAAGTTTTCACTGATCCTGAACAATT
CAATCCAGACCGGTTCGAGACCAAACCATCAAGACATTATTATCCGTTCG
GTGACGGCTACCGTATGTGTCCGGGAAAAGAAATGGCTTTGTCCGAAATT
AAAACCTACTTAGCTTCGATgttgaaaaactttgatttgTCACTTGTTGA
CGAGAACCAAGAATTATGCGTCAAATCATACATTTCAGCTCAAACCACAA
TGGCGGTGGATGAACCAATCCAAATTCGTGTACAAAAAAGACGTCATTAG
GACCAAACCATCAAGACATTATTATCCGTTCGGTGACGGCTACCGTATGT
GTCCGGGAAAAGAAATGGCTTTGTCCGAAATTAAAACCTACTTAGCTTCG
ATgttgaaaaactttgatttgTCACTTGTTGACGAGAACCAAGAATTATG
CGTCAAATCATACATTTCAGCTCAAACCACAATGGCGGTGGATGAACCAA
TCCAAATTCGTGTACAAAAAAGACGTCATTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000112_pilon | genome | sc0000112_pilon:206261..212937 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1336-1566:6447 |
| Aaloc | 1186-1332:4492 |
| Aaloc | 895-1182:3614 |
| Aaloc | 625-894:2696 |
| Aaloc | 418-621:1027 |
| Aaloc | 1-417:1 |
|
