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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000270_pilon:438243..443385+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005485 ID=XLOC_005485|Name=XLOC_005485|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5143bp|location=Sequence derived from alignment at sc0000270_pilon:438243..443385+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAATACGTTACGTTGAGGTAAGAAGCGATCATTGGTCTGATGCTCC
TTCTGCTATCATTGATAAACTCAAAAATCTTGGTGTGAAGAAGGGTCAGA
TAGTATGGATTGATGCCCATTGCGCACATATTCATGATCAAGCAATTATT
AGTGCATACTGGGATGACCACATTGCAAGCGAAGATCCACTTGACATTCG
CTTTtatttgcaaaattatgacGAAAGTTGGGCAAGCGAGTACGAAAATG
CTGTGGATTTTGCCTCGAAGATACAACCACAAAACCTTATTTCGATTACT
GGTAGTggcaatataaaaaataaaagcgtCTGCATTGTCTTTTATTACGA
CGGTCCTGAGGCGAACCCACGACAAAATATCAGATGGAAAGAATCTAGGT
CAAGTAATTGGTCGAGTGTCGCAAATGACATCATTAAAGAATTGAAGAAT
GCTGGTGCGAAACAAGGCCAAATAATTGGAATTGACGCACATGCCAACAC
CGATAAGGCCAATCCTACAATTCAAGTAGGTTTTTGGAATGCTTCCCTTC
CTGGTAATGGTGATTTGAATATAGAAtacaaaagtgagtcttttagtttt
aaaattctttgtttttgtttcacaATTGCGATTAAAATTCTGCCCTTATT
ATCAGCTCTTATTAGCTGACAAAAAGAAACGAGGTGTACAGCTTAGCACA
CACAGAAAACATCTTGATATCACTTGCTTACTTCGtaggaactaattacc
gaaaggtatatggctgtctataagagttattgatctgattcttataaact
agatgcttataagaacaattaacATGCTCATACTGTGtactgtcccttgt
ttactttgtaagagctaattaaCGAAAGATATATGGTTGTTTATCAAGAA
ATATTGATGACATGAATAATCGTCtgctcaggcaaattaaggcacgtcca
aatttttcttttaattttttatcaccgtttccacttgtcatagcatatca
cttcatacatcgaaagaagcctattggagtgtagatcactggccataatt
aatttttccccccaaaaaaagatatcttttttgggtgaaaaaattaataa
tggCACACCAATTTTCACTTTACTGTATCCCTCTTTAAAGGAATTCTACc
aggtgacccacgaaaaaattcattatactagccataactttcattaaagg
tgccaccgcagcaaagcgaacacacagagttgaatttgcgttcaaaagga
atgatcttagccctacagtaatttttgttaagagtgacctctcatctgag
acaaaattctttcaaatgctaacaaatctgtcaagggagtgatttacagt
ctacttagagtgacatccgtgccttgtcttacacgttttttataagaaca
atttcataagaatacaaGGCTgcaatttggccaaaacctaagaacaaatt
aagaagaatctgaacctctgatttcagaaattactgagaaatacatgttt
ccattttaattaatattgacatttaaggctgaaaaagcAGCCCAGCctga
atcatatgacttactggtttttccaataaaaagcgtatatatctgaagat
actgctcttcacatgtgattttactaatgtacacgtttagtaacataact
gttcgaatactttgagtatagtaatatttttaccttatgaagagcgctta
ataactacttgttgTATGGTATAAAAAGGAAAAGTACGACCCCTAGCATT
AATACAGCGACGAGACCTAGAAATAATTCCATCGAAAGCGTCTCTGATCA
TTTGCTGATCTAAGTTGTTACAAGCTCTGACGATTGCTGCTTTCAACTGA
TTGATGGTTTGGGGTTGCTGATTGACAGGAACATTCCAAATGGTGTGTTT
TAAATGGCCCCACAGaaaaaaaCcgcttatttttttcttaatgaAACTTT
TAAGACAAAGAAATAGCAAATGATCAAAGGAAAGATGTTTGTTCTGATTC
AAATTTGATACTGTCTTTTATGACgtttttcaactgttttttataatgac
ttttgactttatacctccatatctcgataactacttttccaaaattaaaa
aatgacacatcaaaatttaagtttgcctttcctctttatcatgaaaaaag
aattcagttaaaattcaattctttttcggacacagttaccctccaaactc
ttatactttttctTGGGTCACCCGCCGGTACTGCACGcggaaaaaatgaa
ataaaatgattGTAAAGTTTTTAACAATCAGTTACAGCTAGAGATGACTC
TTTGTTATCATAATGTGTAATCAATGAATCGTAAAAATATATTACAATGA
TACATTATTAATGATATATTATTTATACATCACCCCCGGTTTCAcgagaa
aagtgaaaatttgagttttttccaATCTGGTCCATAAGAATgctaatatt
tcaaaacatatttatttttaaaaacgcaaaatatatttttttggatttgg
cTAAGATTGGGCTTTTTCATGATATAAAATCTTTGTTCCTAAACTACGTA
GATAAAAAGTtaaacattttcatcttcatttttcaaccttttccttttca
ttttcgtgatatttttcTAACTCTAAATGTTCCACTCGGCATtatctttc
aaacaaaaaaataattactaaATTTCTTTCCGTGCCGCTTAAAAAGTTAT
ATCAGACTTTAAGAATACACTGGGGGAATCCTCCTTTCTATCCCGGGAGG
GGGTACTAGTGCAAAATGCGTTACAGGGATGCACCGCtggtaagggtacc
ttttttcacctccaccagtcccacgtagggtcgcaaaaacaccaaaatag
aaaaatcagtccctcgtaggcaGTGCCGTAGACACAAATTATATTTTAgg
gggggCCCTATATGTTTAGTAtctaaggaggccccaccatcacgcctatc
ataggctatttagactattttatataggctatttagccgaaaatcgataa
aaacctcgatttctgacgaaatataaatagtcgcgtcttctctaaggaat
acatggtttctcattgttagagaaatgttcatgacaaattttgactcTGT
GTTAATTTTGGTTTAGGAAAATATTCCACTTTGGTACTGCGCATGCGTGC
GCATGCGCAGGGTAAGAAAATCgggctttttgaaaaaaaaaatttttcta
acaaACATGTGTTTTTGTACACGGCACTGTGTTTCAttctgtttccaaaa
ttgaatgttaaaaagattcttttggctttgggcaatgaaataatggtgaa
aaatagacgcgactatttatatttcgtcagaaatcgaggtttttatcgat
tttcggccaaatagcctatataaaatagtctaaatagcctatgatggGCT
AATCAGCCtataggctaatcagcctatgataggctaatttgaaggtgttc
ttgactTATATATGTTTTGAATAGAAAGAAGCGATTGCTCTCTTTTTATG
TCTTgattcattactttttttttgttcgtactcactttttcatacttttt
tttgttcgtactcactttaatcgtagaacttttagcgagactaatgttag
cgttttagcgagtttttcCTATTTTCGCTGAAacaaatctcgctaaaaca
agCCGtaccgacagatcgctaaaatctATCCAcccgaaatttctggttat
attgtcttgtgatacatttttatcaatagttAGGGTTTCAGtacaaagaa
atgctagaaaacaaattcagtcaataatgtaatacgagtattcgctaaaa
taaatccaaaaaaaattaagattttcctgactcgctaatataccataaaa
ttagtctcgctaaaatttctacgattaaagtagctGTTATCGCACCTTTT
ATgacattaaaaaaatgttatttttgcgTTTACACTATGTGCTAAGAAAA
AGGTTCATCATGTTTTATCATACGCACTATGTTTATCACTTTTTTATCGC
ATTTTTCGACAAGTGTGAACTACGCTACAGGTTCTACTTATCGAGCAATT
CGGATTTATTGAACTTATAAGTGAAACATTCGATAAGTGGAACCATTTTA
TCAATTTACCGAACAAAATATCGAACAAAACTTAGTGGGAcaaaatttta
gtcacctccaaaaaaaTTGGTCACTTTTGCCCGACTAAGTTTTGTCCGAT
AAGGTATCAAGAGTAGACTGTATAGTCAAATGCCATACTCAAGAACCTCA
CTAATTTTACAATTCGTCAATAAAAATTCCCATCATTCCAAGATGCAAAC
CACTAGTGGGGGGATTAAGTGGAATTGTGTCACTGACCCCGCCCTAGTTt
aagttttcataatttttggtcGAGCTTTATTTACTAAGCATTTGGAAAGA
GTAGCCTTGGAATTTCATCCTTTTGACACAGACTTTAGTCTTGTATGCTT
TACTGTTTTTATTTCTCATTATATTTAGTGAGGAATGACAAAGATAGCTA
TGATACGCACTACAAATGGGCATGTAACTTAATCGATTCCCAGAACGGAA
ACCCGAATATATATTCAGTCACTACCAGTCAAAATGATCATAATTCTGCA
GCCACATTCGTCTATGGGGAACCAGACGAAATCTTGAGCATTGATTATGA
TTTGGATAATGGAAAAATTACGGATAGTAAACCAGAAGTGCTTGAAACAA
TAGATAATAACAATGATTCACCCGCCGATCAAATCCTGACTTTTACCTAC
AAAGAAACCACTGGCACAAGCACCGAAAACACATCAAGTTTCAGTAATGA
AGTTGGAGCATCATTCAAAGTCGGCACGAAGTTCTCCACCGGGATTCCAT
TTATTGCCGAGGGCCAAATATCAATGGAATTGACGGCGTTATACAACCAT
ACTTGGGGTAAAACAAAATCAATCTCAAATGATTTCAGTACAAGCTCTGC
TGCCACAGCTTCTGTTAAAGCAAATCCATATACTAAAATCACATGTGCCT
TCAGTGTTCAAAAATCAGATATGGATGTCCCTTATACAATGACCATGAAA
TCTGGGAAGAAATCCTCTGGAACGTGGAAGGGCGTGAACTGCTGGGATTT
CAAGGCTACTTTTAAAGAGGAACCATTGGAAGAGACTTCTTGA Coding sequence (CDS) from alignment at sc0000270_pilon:438243..443385+ >XLOC_005485 ID=XLOC_005485|Name=XLOC_005485|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2496bp|location=Sequence derived from alignment at sc0000270_pilon:438243..443385+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACAATACGTTACGTTGAGGTAAGAAGCGATCATTGGTCTGATGCTCC
TTCTGCTATCATTGATAAACTCAAAAATCTTGGTGTGAAGAAGGGTCAGA
TAGTATGGATTGATGCCCATTGCGCACATATTCATGATCAAGCAATTATT
AGTGCATACTGGGATGACCACATTGCAAGCGAAGATCCACTTGACATTCG
CTTTtatttgcaaaattatgacGAAAGTTGGGCAAGCGAGTACGAAAATG
CTGTGGATTTTGCCTCGAAGATACAACCACAAAACCTTATTTCGATTACT
GGTAGTggcaatataaaaaataaaagcgtCTGCATTGTCTTTTATTACGA
CGGTCCTGAGGCGAACCCACGACAAAATATCAGATGGAAAGAATCTAGGT
CAAGTAATTGGTCGAGTGTCGCAAATGACATCATTAAAGAATTGAAGAAT
GCTGGTGCGAAACAAGGCCAAATAATTGGAATTGACGCACATGCCAACAC
CGATAAGGCCAATCCTACAATTCAAGTAGGTTTTTGGAATGCTTCCCTTC
CTGGTAATGGTGATTTGAATATAGAAtacaaaaATGACAATACGTTACGT
TGAGGTAAGAAGCGATCATTGGTCTGATGCTCCTTCTGCTATCATTGATA
AACTCAAAAATCTTGGTGTGAAGAAGGGTCAGATAGTATGGATTGATGCC
CATTGCGCACATATTCATGATCAAGCAATTATTAGTGCATACTGGGATGA
CCACATTGCAAGCGAAGATCCACTTGACATTCGCTTTtatttgcaaaatt
atgacGAAAGTTGGGCAAGCGAGTACGAAAATGCTGTGGATTTTGCCTCG
AAGATACAACCACAAAACCTTATTTCGATTACTGGTAGTggcaatataaa
aaataaaagcgtCTGCATTGTCTTTTATTACGACGGTCCTGAGGCGAACC
CACGACAAAATATCAGATGGAAAGAATCTAGGTCAAGTAATTGGTCGAGT
GTCGCAAATGACATCATTAAAGAATTGAAGAATGCTGGTGCGAAACAAGG
CCAAATAATTGGAATTGACGCACATGCCAACACCGATAAGGCCAATCCTA
CAATTCAAGTAGGTTTTTGGAATGCTTCCCTTCCTGGTAATGGTGATTTG
AATATAGAAtacaaaaTGAGGAATGACAAAGATAGCTATGATACGCACTA
CAAATGGGCATGTAACTTAATCGATTCCCAGAACGGAAACCCGAATATAT
ATTCAGTCACTACCAGTCAAAATGATCATAATTCTGCAGCCACATTCGTC
TATGGGGAACCAGACGAAATCTTGAGCATTGATTATGATTTGGATAATGG
AAAAATTACGGATAGTAAACCAGAAGTGCTTGAAACAATAGATAATAACA
ATGATTCACCCGCCGATCAAATCCTGACTTTTACCTACAAAGAAACCACT
GGCACAAGCACCGAAAACACATCAAGTTTCAGTAATGAAGTTGGAGCATC
ATTCAAAGTCGGCACGAAGTTCTCCACCGGGATTCCATTTATTGCCGAGG
GCCAAATATCAATGGAATTGACGGCGTTATACAACCATACTTGGGGTAAA
ACAAAATCAATCTCAAATGATTTCAGTACAAGCTCTGCTGCCACAGCTTC
TGTTAAAGCAAATCCATATACTAAAATCACATGTGCCTTCAGTGTTCAAA
AATCAGATATGGATGTCCCTTATACAATGACCATGAAATCTGGGAAGAAA
TCCTCTGGAACGTGGAAGGGCGTGAACTGCTGGGATTTCAAGGCTACTTT
TAAAGAGGAACCATTGGAAGAGACTTCTTGATGAGGAATGACAAAGATAG
CTATGATACGCACTACAAATGGGCATGTAACTTAATCGATTCCCAGAACG
GAAACCCGAATATATATTCAGTCACTACCAGTCAAAATGATCATAATTCT
GCAGCCACATTCGTCTATGGGGAACCAGACGAAATCTTGAGCATTGATTA
TGATTTGGATAATGGAAAAATTACGGATAGTAAACCAGAAGTGCTTGAAA
CAATAGATAATAACAATGATTCACCCGCCGATCAAATCCTGACTTTTACC
TACAAAGAAACCACTGGCACAAGCACCGAAAACACATCAAGTTTCAGTAA
TGAAGTTGGAGCATCATTCAAAGTCGGCACGAAGTTCTCCACCGGGATTC
CATTTATTGCCGAGGGCCAAATATCAATGGAATTGACGGCGTTATACAAC
CATACTTGGGGTAAAACAAAATCAATCTCAAATGATTTCAGTACAAGCTC
TGCTGCCACAGCTTCTGTTAAAGCAAATCCATATACTAAAATCACATGTG
CCTTCAGTGTTCAAAAATCAGATATGGATGTCCCTTATACAATGACCATG
AAATCTGGGAAGAAATCCTCTGGAACGTGGAAGGGCGTGAACTGCTGGGA
TTTCAAGGCTACTTTTAAAGAGGAACCATTGGAAGAGACTTCTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000270_pilon | genome | sc0000270_pilon:438243..443385 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 586-1248:4481 |
| Aaloc | 1-582:1 |
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