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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000270_pilon:321563..327255+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005482 ID=XLOC_005482|Name=XLOC_005482|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5693bp|location=Sequence derived from alignment at sc0000270_pilon:321563..327255+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATCTAACAATTGCTTGGTGGACTGGTAAACGCATAGGTGTATTGTT
GGCTCGACCATCAGTCCTGTCCATGAAGAATCAGTATGTCTGCAAGAGGA
ACCAGAGTACAATGTAAGCCATGTTCTTTTTCAGAATATGTTTCAGGGTT
CCCACTGGTCAGGGAAAACCTGGAAATTGTACTATTTTTTGTAAAAGTCA
GGGCAAACCTGGAAAAGTCAGGGAATATTTTATTATGTCTTTCCAAGTCA
GGGAAAAGTCAGGGAATTCTGTTTTATAAATGCTTAAAATCAAAAGACTT
CTATCAAATAGTCTCTTATTTTCCAAAATTTTCTGTGTCGGACCCTGCTT
TCGTCAGGGAGAAATACCACTTTTTTTAGTAAAAAGTCAGGGAAAATAAT
GTTTTTCACATTGGATTGACACAGATGTGGAGCAAGGTTGGTCaaaaaga
ggaaaaggaaaaaatatttttgcttattatatcagcataatataataata
ggcagacactgtcctggtgtgatatgaaatatgtgtctaatatgaaacgg
gaacacttatgtaaaaatataaaccttTAAGTGTAATAAGTTCGTAACAA
TTATTGTTTCAGGTTAGCTGAAGTTGGCAGATTTGAAACTCCAAAAGTCC
AAGGAAAATATGAAGCAGGCCAGGTAATTATTCTAAATTGACAGACTTGG
TTAGCACTGGTGAAGGAAGTCTAAAATCCGAATCTGAGaaaattcaacaa
aagaaatactGCAAAATACTATTTGaaacagtttgaaaatgttCACATCC
AAAAGATAGAATtgttatacatgttttttttataagcaagtgtctgcccc
ttggtctggctcgtgtatgcttttaagttctcaaagtatccaggcatagt
ttatgcttattataagCAATGGAATGtcgctagccgtggaatgtctattt
tttacttgacctctaccaaacctttttaagcAGATAAAAAATggtaactt
gaaaaatatttcaggctgacatatgTATGGGAAtcctgcaaatctgagcc
ttcatatgcttataagcgttatgcttataaaaaacacgtatTTTGCATAT
ctacaaaataatgaaaatggaaGGATTATGATTAACTAATGCACAATAAA
GTGCTAATAGGGGTTCTTTATACAAACACAGTACAATTTTTCATTCTCCT
ATTTTTTCATTCCACCTACAGTTGTTCCTACATCGTGTGTTTGGGTATAG
AGGTGTCATCTTGTACCCATGGATCGCCAAATTCTATGATCTTGATTCCA
TTACCGATGGCAAAGACAAACCGTAAGTAGTTTCAAACTTATTGGATAGA
AAAGCTATGGATCGATGTGTCTACGTTCTGAAATCTTCAACTTATTTTGG
CTTGGATCGCGAGTTTTACATCTGGCTACATGTTGGAGAGATCATTTCAC
CTATACAATGGAGATATTATTTCACTTAATCAAACACAATGGAGAATATT
TTCTTCATAATTTCTTCCGAGACCtttttttGATTCTGATCAACCATAAT
TATCAAACGTAAAATGTAGGAAAGTTTCGGACAAGAAATTTGTTTCAGCC
TCATTAAGATAAGTCACAAGGCAAATCTCCATAATGTTATTTTTGGTAGG
ATTCTTGAAGAAACaccacaaaatgaaaaaaagaatactAAAGAAACTGC
AATGAAGCCGTCATCTTCTACTTATTACCAAGTTCTCATTGATGAACGTG
ATTATCCGCACATTGTAAGTTTCTCTATTCATTTATTGTATATATTTGTA
TACCGGGTGCGTGaaaaaaaaCGCCCCTATTTTACAATCTTTACATTTTT
CTATTCAGTTGAGctgcttgaatttttttgtgagttgtacattttatttt
caaacatttctcGAAGTATATCTGAATATTTGTTGTTGGTACATTTATAT
AGTGTACTCTCTAACTAACGAAAGAACATTGGGGTTCctttagattttca
accttaTCAGTTAAAGCCAGATTTTTTGTAATAATTGCCAGATTTTTCAG
ATTGTTTGCTGTTTGGTTTTCCGGACTAAAAAATGTAGCCCCTGACTTTC
TCcgatgtccgctaattagagagCTTGTTTAAAATTTATCCCAATGATTT
TTTAAGCTTCATTCACTCACTGCATGACAATATAAACATAAGTATGCACA
AAGTAGACTACCTCTTTGGTGAGTAGGAGGGTTCTACAAGCACGACacca
atttcatatttttgcagTGGACGACCTTCCCATCTTACAATTTCCGTTTT
TATCATCCGCAGAGGGCACAATCGGAGGCTGTTACATTTTTGGGCAACCC
AGAGGATACCACACTGTATGCTGTACCCGGTAAAGGCTCGTTAATTTATT
AAGGGTTTCtaaatttgatgaatttgaattgaatttaagATTTTGATGGA
TCCatcttttcaattaaaagattttctataaCAACCTTATCctttgttgg
acctacctggaggtcctataaattaacctttgtccgttcgtctgtccgtc
tgtccgtctgttaccagcttttctcgagattggctcattatttttttctg
atttttggaacaaagctgcaaaatagtaatgtccaaaatgtgacggagcc
acattttttccggccgaaaataccagaaacattttttttggcattctctc
gagattttatcattagtttttccgattttttgcacaaagatatgACCGAG
Tcctaattttgagaaaaattattttccaaaaatgttggaaatatactgga
aattgccgtttttgtagattttcattggactttttctaATAATCGTCaat
actgatttttgcaaccggaactttcgatttcttttttccctactcccctt
ccctctccccccatcaacaatcaatggtGAAATTTGATGCGTTATGCATT
TTggctaagcgctatattttctgactgattgttgAATTTTTCTCctcatt
gctatctaactttcatcgtCAGCTAGGTCCAATCAGCATCTAGCCTGTtt
tgaacaaaacaaaaaaaagtagcAGTCGAGTAGTCGCTCGATGACAAAAG
ATTTacacaaagatataaattgaatttaTATTCAATTATATAGCCAGGTT
TTTTATTCTTTAACGACTGGTGCTATTAATAAAAGAGTGAAATCCAATGA
TCTGGTGTTGTCtttttttAGGTTTGGATTATGTGAATCACACGGATATT
TTACCGTACATATCAAGTTCTGAGCAACCTATCGAACATGATCTGTTCAA
GAAATTCCTTCTCCCTAACCAAGACCAAGGTAAAGTAACTCATATTAATA
TTATTCAGACATTCACCAAATGTTCATAATAACTCGGTGTCTGACAGTAG
CTTGGTGGGTCGACCAAAATTGGGGCAAACTGGGGAgacaattttaaaag
attttgattttcgcGCCCCCTATTAAAAGTaaacatctttgaaaaaataa
cgccaGAGAAACGAGCACGaaattttttgggtatttctgTCCTTTTGATC
GAAAACTACCAATTCTAAGAGGTAAAAAAGCAAAGGGGCGtcaaaattag
taatcagaggcaTATTTTTGCGCCCTTTTTATTTcggcgccccccccccc
cccccaaaaaaaaaatcggccGCTCGGGTGGCACTGCCCCCTgtcccctg
ccaccacgctactggtgTCTGCTTCGGTTACCTCCATATCTTGAGTATCA
CCACATCTCTCGTAAACTTTTCTGGAATTATTTATCAATTATTCAATATT
CTTCGTTCTACAGTACCGGCTTTCACTGCAAGCCCATCATTGCGCACATG
GCATCAAAAGAACCACAAGTGGCTTGAATTGTCCGAAGTGATCCGTGAAA
CTACGGACAACATCCGTGTCACTGCTATTCCTTTTTACATGGGCTCCAGG
GTAGGTGCTTTTATACAACATATCATAAACGTCaaaagctgaagaaaaac
agaaaatccaaaaaagccATTTCCTTGAGCATTAACGTAATTTCGAAAAT
GCTTTTTACAATAGTAGGGTACTAAGGGTTCAGTCAGTAAGGCCTTCTAA
CCGAGGGTTTTTTAATTACcttcagtattttcgtttctttttaGATGGTT
CACGGCGCCAAAAGCTACTGGGTAAGAAGAATCTAGTGAAATTTGTTCTA
TATAATCTCTTTTAACGGGATCCGTTGAATTGTATCCACCCGTCGGACGG
GATGTCGGACGGATAAAATGCATTGAATTTTGTATCAGTGCATATAAGAA
TTccgtagggaatttcccttctgTCCACTATTCTCTAAGtttgaaccaca
agtgattttgtggTTTAGAGATGCTGAGGTATGCAgagctgacgagtcct
aataaggacgaaatgcatatgctgttctgccacccaaatctcctgaaaga
aggtagttggacagaaattcttatttcttcacatatataatTGGTTTATA
ATTTATCGTTGTTTATGATTGGCATGATTAGCAAGATCAGTTTTTTATTG
CAACCAAAGAGGAAAAAAGGGTAAAATTCACCGAGATACCAATAACATGT
ATCCATAAATGATTGAtagctttttcctttcttttttcagtGGCGATATT
CCATCCGCTTAGAGAACATGGGTATGGAGTCTGTACAATTGAAAGAAAGA
CATTGGCGAATCTTTTGTCTGTCTGGCGTATTGGATTCAGTGAAGGGGCG
TGGAGTGGTGGGACAAGAACCTGTTCTCTCAACTCGGCAACCGGCATTTC
AGTATAGTAGTCACGTGACGTTACCCTCACCAAGTGGACACATGTGGTAA
GATACTAATACCCTTTTTTATGAAGCCCCATAATAACATCGCATTGAATT
TTTTCCAACGTTATTAAAGTTTAAAAGGtcaaaagtaagaaaatatacaa
tttaggacttgcttttttgattttgataccTGGATTATTTTGATAACAGG
GATGTTCAATGTCATCTTGATCTTCTCTAAGTATATTATATTCCgtataa
aaaacactggtctagaagcttattgttttaactttttgttagcttttccc
TTGGTTGTTTGGTTATTAgacaaaagatgaaaatcgatttgctcagtttt
tgatcacgttaccaagtactcctcttgggattgttTTAAGATtaaatcac
atgatcaaaaagtgagcataacaaactaatttctcaacacaagttcaagt
aagaaacaatggaaagaaaaaagGCTTTCGGACCGGGTGTTCTTATACGG
ACTACGGAGTATATAACAGCGTATCTTACTGTCTACCCTAACCCCTTTCT
TGTGCgatctactttaatgggataaactttcgcggggattaaatttcgcg
gttgggcctatccacgaaattcaaatattttgcggggacttaatttcgcg
gattttcgcggatgacacccaaatccgcgaaatccgcgaaatttaatccc
cgcgaaagtttatcccattaaagtataagaATGATTGTAACATATCCATG
CTGTGGGGCCATGCTTATCGAATAATCCATTATTTATTCATAGGGGTACG
TATCGTTTGGAGCGTCCTGACGGACGAGTGTTCGACGTCCGTATTCCGTC
ATTCCCGTTGGAAAGTAAAGAAGACGATCCAATAACTACGTGA Coding sequence (CDS) from alignment at sc0000270_pilon:321563..327255+ >XLOC_005482 ID=XLOC_005482|Name=XLOC_005482|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000270_pilon:321563..327255+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATCTAACAATTGCTTGGTGGACTGGTAAACGCATAGGTGTATTGTT
GGCTCGACCATCAGTCCTGTCCATGAAGAATCAGTATGTCTGCAAGAGGA
ACCAGAGTACAATATGAATCTAACAATTGCTTGGTGGACTGGTAAACGCA
TAGGTGTATTGTTGGCTCGACCATCAGTCCTGTCCATGAAGAATCAGTAT
GTCTGCAAGAGGAACCAGAGTACAATGTTAGCTGAAGTTGGCAGATTTGA
AACTCCAAAAGTCCAAGGAAAATATGAAGCAGGCCAGGTTAGCTGAAGTT
GGCAGATTTGAAACTCCAAAAGTCCAAGGAAAATATGAAGCAGGCCAGTT
GTTCCTACATCGTGTGTTTGGGTATAGAGGTGTCATCTTGTACCCATGGA
TCGCCAAATTCTATGATCTTGATTCCATTACCGATGGCAAAGACAAACCT
TGTTCCTACATCGTGTGTTTGGGTATAGAGGTGTCATCTTGTACCCATGG
ATCGCCAAATTCTATGATCTTGATTCCATTACCGATGGCAAAGACAAACC
GATTCTTGAAGAAACaccacaaaatgaaaaaaagaatactAAAGAAACTG
CAATGAAGCCGTCATCTTCTACTTATTACCAAGTTCTCATTGATGAACGT
GATTATCCGCACATTGATTCTTGAAGAAACaccacaaaatgaaaaaaaga
atactAAAGAAACTGCAATGAAGCCGTCATCTTCTACTTATTACCAAGTT
CTCATTGATGAACGTGATTATCCGCACATTTGGACGACCTTCCCATCTTA
CAATTTCCGTTTTTATCATCCGCAGAGGGCACAATCGGAGGCTGTTACAT
TTTTGGGCAACCCAGAGGATACCACACTGTATGCTGTACCCGTGGACGAC
CTTCCCATCTTACAATTTCCGTTTTTATCATCCGCAGAGGGCACAATCGG
AGGCTGTTACATTTTTGGGCAACCCAGAGGATACCACACTGTATGCTGTA
CCCGGTTTGGATTATGTGAATCACACGGATATTTTACCGTACATATCAAG
TTCTGAGCAACCTATCGAACATGATCTGTTCAAGAAATTCCTTCTCCCTA
ACCAAGACCAAGGTTTGGATTATGTGAATCACACGGATATTTTACCGTAC
ATATCAAGTTCTGAGCAACCTATCGAACATGATCTGTTCAAGAAATTCCT
TCTCCCTAACCAAGACCAAGTACCGGCTTTCACTGCAAGCCCATCATTGC
GCACATGGCATCAAAAGAACCACAAGTGGCTTGAATTGTCCGAAGTGATC
CGTGAAACTACGGACAACATCCGTGTCACTGCTATTCCTTTTTACATGGG
CTCCAGGTACCGGCTTTCACTGCAAGCCCATCATTGCGCACATGGCATCA
AAAGAACCACAAGTGGCTTGAATTGTCCGAAGTGATCCGTGAAACTACGG
ACAACATCCGTGTCACTGCTATTCCTTTTTACATGGGCTCCAGGATGGTT
CACGGCGCCAAAAGCTACTGGATGGTTCACGGCGCCAAAAGCTACTGGtG
GCGATATTCCATCCGCTTAGAGAACATGGGTATGGAGTCTGTACAATTGA
AAGAAAGACATTGGCGAATCTTTTGTCTGTCTGGCGTATTGGATTCAGTG
AAGGGGCGTGGAGTGGTGGGACAAGAACCTGTTCTCTCAACTCGGCAACC
GGCATTTCAGTATAGTAGTCACGTGACGTTACCCTCACCAAGTGGACACA
TGTGtGGCGATATTCCATCCGCTTAGAGAACATGGGTATGGAGTCTGTAC
AATTGAAAGAAAGACATTGGCGAATCTTTTGTCTGTCTGGCGTATTGGAT
TCAGTGAAGGGGCGTGGAGTGGTGGGACAAGAACCTGTTCTCTCAACTCG
GCAACCGGCATTTCAGTATAGTAGTCACGTGACGTTACCCTCACCAAGTG
GACACATGTGGGGTACGTATCGTTTGGAGCGTCCTGACGGACGAGTGTTC
GACGTCCGTATTCCGTCATTCCCGTTGGAAAGTAAAGAAGACGATCCAAT
AACTACGTGAGGGTACGTATCGTTTGGAGCGTCCTGACGGACGAGTGTTC
GACGTCCGTATTCCGTCATTCCCGTTGGAAAGTAAAGAAGACGATCCAAT
AACTACGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000270_pilon | genome | sc0000270_pilon:321563..327255 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 982-1080:5595 |
| Aaloc | 775-978:4641 |
| Aaloc | 748-774:4145 |
| Aaloc | 613-747:3816 |
| Aaloc | 505-609:3224 |
| Aaloc | 391-501:2268 |
| Aaloc | 277-390:1651 |
| Aaloc | 175-273:1222 |
| Aaloc | 115-174:614 |
| Aaloc | 1-111:1 |
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