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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000018_pilon:2406059..2409574+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005303 ID=XLOC_005303|Name=XLOC_005303|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3516bp|location=Sequence derived from alignment at sc0000018_pilon:2406059..2409574+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCTCTGTGTACACACATTCAAAGATGTTTTGGTTCAAGGTGTTTTTATT
ATCTGCTTGCTTTTTACAATACATCTCATCAAGTAAGATATTTAACTTGA
ATTTACTTCAACTTTTCTTTGGGATTTCCAACTTAACgaaattctaattt
ttcagAAGACACTGGGGGTCGGCTgccaaaatcaattaaaaatccGGTTA
CGTTTTAGAACTCTAATAATCAGACTTCCTGAAGCAACTCagttcttgag
atatgactCAGTGCCTCAGGTGATCTTGGACCCTAAGGGCCACGAAAGTC
CTCCTAGAATCTCTTAGATATTTAATCTTTATCTTGACCTTCAAGGAGGA
TTGGTAATGCAATGTTTGATTAGTCCTTATGACTaagttttttttcagct
tttgtcACTTTCTGTCGGAAAATGTCAATGCCGACCAGCGGGGATAAATT
ACCATGGTCTAGTGATCTGATCCAGGTCGAAGGTGAACCACAGCATTGTC
TCTACTTTACCTAAAGAGTATTTATGTTTTGAGTCTTAAGAATATTTATG
TATTAGCTTAATTTCTAATCTAAATTATGATTTACATTTCAAGTTCGGAG
ACATGCATGCAATGGGAATTTTCCAAAACGAGATCCAATCAAATGTCACG
GAGACCGAAAATTGAATATCATCAGTGCCAAATATGGACGTTTTGGACCC
AACCaaaaaaaGATTTGCTTCGTGATTCCTCAACttatcaaaatgaagac
atgCCAAGATGATGTGACCGAAAAAATGCGTGAAATTTGTAACGGACAAT
CAGAATGTAATCCGAATGCAATGAAGGATCAAATTTTGGATCCTAATGGT
TGTGCTAAATGGAATAATCTACTTTTATCACGAAGATATTATTTTGAAGT
GGATTTTGAATGCAAAGAAACGAGTACGTATTTTTGAGAGACAGCGAATA
ATCGTCAAGTTTCTAATTATacattttaactttctttttcttatcttatt
tttcaaaattactcGAAATGAAAATTCGGCTATTCagacaaaaaattaag
ttctTCACGCAATAACCGAGTACAGCGAGCTTTTCCCAAAAGATCTTAAT
ATACTTGTTTCGAAAAGAAGCTTCTTGATAACTTAGATTTAATATAGAAA
GTAAAAACGACTTctatctttttctttcaataaataTAACTTTCTTTTCA
GTCAAATTATGCTCAGGCTGTGAGAATCGCATCATGGAAAAACCAGTGAC
ATGTCCAAATGGACGCAAAGTTAACGTCAAATCTGGTAAAGAACTGATGA
TTAGAAACGGACAAGAATTAGAAGAATCGAATTCAGTTTGCACCACTGAT
ATCGCGAATGTCTTACGCTATCATACTAATGgtcgaaatgaagccatttt
ttATTATCATATGTTTTCGTATGGACAGTTTGATAGCTCTTTGGTGGATT
ATTCATATAATTGTGGTGTGATTCATGGATTTGAAATCACATTCGGCTGT
GCGGCAACTAAAAGTAAGTTTCACTTCCCAGCTGACATACAACGTTGTgc
caacgttcatttaacgtttcATAGATGTTATGAAAGTTAAATAGACGTTA
ATTTGACgtgttttatttttccatttggGTAGTATTAATTTCAATGTCAC
GATCCGACCTGATTGTCCAGACAAAACAATCACAACTACGTTTCTTTTTG
CTTAGAACGAAAGTGAAAGCGACTGGATTCTATTTTTTCCTCTATATAAG
TGACGCTTGACTTTGGTGCGATTGTTTTACTTTAGGCAATCACcacgctc
aaaagctcatttcaagattttggccaaatttcgcATATCGGCCGAAACAA
ATAGCGTATTTAATACAggtttattttaatattttatgttaAATAGAACG
TACTTTATCatcgttttctttttcagatggCAATCCAACAGAAGATTCCA
TTAAAACAGGTAGcatgttaaaatattttttttctcctatCTATTTCTGG
AAAAAGAGATTTTCTATTGCAACGGGTACCCGTGACACAGGATTCCCATT
ATAGTTGAACCTTAAGGTTGCTGACATCCCTCGGATCCTACTCTTTAGAA
TACAGAGGCCTGGGCATGAGTTACGAGCTACGAATAAGTTTCAGAAGACT
TTAATTTAGCTTGATTCATTGTaaaaaaaGTCCCCATTTGACATAATGGA
ACGAACACTTATTGATAAGTATAAGTCTGTGACTACAGTGGACCCTTAGC
TAACTATTTCTCAATTTacccttgatctttctctttaattgctgagcatt
aagggctctgaccatagtcgaaaaattgattttagtaattgaacataaaa
gttatgttttaggttttttaacatttttaacaaagaattgcctttataaa
ttgttttttaatcaaatccctttagagcaattaagaatttaattgcaaaa
atgacgctatgaactttaaaaagacattaataatatgttgcatttccttc
ttttataaaaagtgctaagttttaatgggtaattaacctttttgtttcga
agttttttcaaactatccgcaaagaattgaactgttttaaatttttcggg
aaaattttctaaattaatgcagcAAAAGTTATGGctatttttctatgaaa
aattgggatgattagttgggatgaaaaattggtccaAAAgcgcactattt
tcaagattttgagacaaataagcttttagaaaaattttccgaaaatcttt
ctttagttcgctaaaagatacaccatctaccgcaacaaaattttcaaaat
gttttttcttcgccgaaaataagcacTTCAAAGGTGAATAATATTCTTcg
caaatatcttcattttcttcttcatcaatttttttcattgcgattcttaa
actTTCAGATATAAGGATAACTGGCCTAACAAAAAATTTATaccatgcca
cagttttgtgggctacatcaagtagaaatttatattttgtacgtggcaaa
ttaaaaaaaatcactatggtcagagcccttaaatagaGAGACATCAAGCA
CTATTttgaagtctttggtatgaccggCCCAGGGATTGAACAACCCACAA
CTCTAGAACCGttaattttctagaaaattaaGAACCGTTTGGGGACGTTT
ATTAGGACCTTAGAGTATAAACTATGATGCGTTTTAAGCGATTAATTTGA
AAATACTAGTATATCTTGTCGTGTTTTAGTTTCTTGGACCACTGTCAATA
CTAACAACTCACCGGCAACATGCTCTGATGGAAAATACACCATCATCTTA
GCATCCAAACTCCGCGCATTTTCAACGCTTGGAAACTACTGGCAAAGAAC
ATTTTCTTCAATCCACAAGAAAGTGTGCGAAGTTGACGGTTTAGCCATAA
CCAGACAAGATTTTCAAAATTTTCTCAGTCGAGATACGTTCTTGAATGCA
CATTACCTAGCCAGTAATGCCTGCCGTTATAACAGCCCAATTTTGATTGA
CTACACTTGTGAGTAA Coding sequence (CDS) from alignment at sc0000018_pilon:2406059..2409574+ >XLOC_005303 ID=XLOC_005303|Name=XLOC_005303|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0000018_pilon:2406059..2409574+ (Clytia hemisphaerica_ch_hm2_pilon)
ATCTCTGTGTACACACATTCAAAGATGTTTTGGTTCAAGGTGTTTTTATT
ATCTGCTTGCTTTTTACAATACATCTCATCAAATCTCTGTGTACACACAT
TCAAAGATGTTTTGGTTCAAGGTGTTTTTATTATCTGCTTGCTTTTTACA
ATACATCTCATCAATTCGGAGACATGCATGCAATGGGAATTTTCCAAAAC
GAGATCCAATCAAATGTCACGGAGACCGAAAATTGAATATCATCAGTGCC
AAATATGGACGTTTTGGACCCAACCaaaaaaaGATTTGCTTCGTGATTCC
TCAACttatcaaaatgaagacatgCCAAGATGATGTGACCGAAAAAATGC
GTGAAATTTGTAACGGACAATCAGAATGTAATCCGAATGCAATGAAGGAT
CAAATTTTGGATCCTAATGGTTGTGCTAAATGGAATAATCTACTTTTATC
ACGAAGATATTATTTTGAAGTGGATTTTGAATGCAAAGAAACGATTCGGA
GACATGCATGCAATGGGAATTTTCCAAAACGAGATCCAATCAAATGTCAC
GGAGACCGAAAATTGAATATCATCAGTGCCAAATATGGACGTTTTGGACC
CAACCaaaaaaaGATTTGCTTCGTGATTCCTCAACttatcaaaatgaaga
catgCCAAGATGATGTGACCGAAAAAATGCGTGAAATTTGTAACGGACAA
TCAGAATGTAATCCGAATGCAATGAAGGATCAAATTTTGGATCCTAATGG
TTGTGCTAAATGGAATAATCTACTTTTATCACGAAGATATTATTTTGAAG
TGGATTTTGAATGCAAAGAAACGATCAAATTATGCTCAGGCTGTGAGAAT
CGCATCATGGAAAAACCAGTGACATGTCCAAATGGACGCAAAGTTAACGT
CAAATCTGGTAAAGAACTGATGATTAGAAACGGACAAGAATTAGAAGAAT
CGAATTCAGTTTGCACCACTGATATCGCGAATGTCTTACGCTATCATACT
AATGgtcgaaatgaagccattttttATTATCATATGTTTTCGTATGGACA
GTTTGATAGCTCTTTGGTGGATTATTCATATAATTGTGGTGTGATTCATG
GATTTGAAATCACATTCGGCTGTGCGGCAACTAAAATCAAATTATGCTCA
GGCTGTGAGAATCGCATCATGGAAAAACCAGTGACATGTCCAAATGGACG
CAAAGTTAACGTCAAATCTGGTAAAGAACTGATGATTAGAAACGGACAAG
AATTAGAAGAATCGAATTCAGTTTGCACCACTGATATCGCGAATGTCTTA
CGCTATCATACTAATGgtcgaaatgaagccattttttATTATCATATGTT
TTCGTATGGACAGTTTGATAGCTCTTTGGTGGATTATTCATATAATTGTG
GTGTGATTCATGGATTTGAAATCACATTCGGCTGTGCGGCAACTAAAAat
ggCAATCCAACAGAAGATTCCATTAAAACAGatggCAATCCAACAGAAGA
TTCCATTAAAACAGTTTCTTGGACCACTGTCAATACTAACAACTCACCGG
CAACATGCTCTGATGGAAAATACACCATCATCTTAGCATCCAAACTCCGC
GCATTTTCAACGCTTGGAAACTACTGGCAAAGAACATTTTCTTCAATCCA
CAAGAAAGTGTGCGAAGTTGACGGTTTAGCCATAACCAGACAAGATTTTC
AAAATTTTCTCAGTCGAGATACGTTCTTGAATGCACATTACCTAGCCAGT
AATGCCTGCCGTTATAACAGCCCAATTTTGATTGACTACACTTGTGAGTA
ATTTCTTGGACCACTGTCAATACTAACAACTCACCGGCAACATGCTCTGA
TGGAAAATACACCATCATCTTAGCATCCAAACTCCGCGCATTTTCAACGC
TTGGAAACTACTGGCAAAGAACATTTTCTTCAATCCACAAGAAAGTGTGC
GAAGTTGACGGTTTAGCCATAACCAGACAAGATTTTCAAAATTTTCTCAG
TCGAGATACGTTCTTGAATGCACATTACCTAGCCAGTAATGCCTGCCGTT
ATAACAGCCCAATTTTGATTGACTACACTTGTGAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018_pilon | genome | sc0000018_pilon:2406059..2409574 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 781-1065:3232 |
| Aaloc | 748-777:1929 |
| Aaloc | 436-744:1204 |
| Aaloc | 106-432:596 |
| Aaloc | 22-102:1 |
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