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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000098_pilon:999570..1002474+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005165 ID=XLOC_005165|Name=XLOC_005165|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2905bp|location=Sequence derived from alignment at sc0000098_pilon:999570..1002474+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTCAAcgatcaaaaaatcttttggacATCATTGCACCCAACAACTGGCA
TCATTTAAATCCGGAAGCTGATTTTATGGACACCATCAAAGACGTAGCTG
CTTTGATCGACAACATTCTCAGAAAAAACGCCAAAGCATCCATAGGAGCA
ATAACTGCACAACATTATTCTTCACTTAAGGTTGGTGCACTTTTCATTCC
ATTATACCAAGGTggaaaaagttttgagaaagatAAGTAGACcacatttt
taagatttaagaaaatttgatcGAATGTGCTAGAGATTGTCATGAACTGA
CGAAGCAACTTGACACATTTCGGAAAGCCTGTTTAAGAACTCATTCATGT
ACTCTATGTGTTAAGTGTGTACTTTGCAATGCGGTCTACTTTCTTTTGTC
AAAACTTGGCAAATGTAGCTAAGAAAATCATAGAGAGTTGGGTGGGGAGT
CAGACATATAATATCCATCCTAAATATCCCCCCTAGTAAAATAGTATAGT
CCCGAGTCTTATCCATCCACTTATGCAACCTTTCAGTCATATTCTTCACT
TCTGATCGAAAGTAACAACAAACCGATAGTAATACTTGATCTACTAATGT
TAAGttattttaataaaaagtaCATGTCAAAtttcggcttttctttcttt
ttgcactcctcaaatttaccttttttcaaatttatatgctttGCGCCATA
TTCGTAtacaattttaaacattttgagCGGTAGTCGAGAGCGTACACAAT
AAGTATGCGGCGGAAAAAATTACTTCGTTAATATTTTATCTCTTTAGATT
CCAAGTTTGGAAACAGATGATACGTTGAAGTTTGTGAACAAATTTGAAGG
GAATAAGGAGTTGAAAATCGAATGGGGGAAATCAATTCTTGTCAGTGACA
TCAACAAACCACTAGATATTGACCCTGCCGATGAGAAAATCATTGAAGCT
TTTGAGAATTTCTATCAAGCGAACAAGACCTCTTTTGAAAGTAATAGAGA
AACgccttttgaaaaagaatcccTCGTCAAGAAAGCAAGTGCGGTCACAG
CGGAAGAAAACGATGTTTTGGTGAATGCGTTGACAGATGTTTTGGATACA
ATCGCCTTACCAAACAACAGACCAACCCGACTCTTACAAGACTACCGTGG
ATCTTCATTTTCTGTACGTGGTTATATCAAGTTTGTCTGTTCAGATGGCC
AATACAAGAAGATCTACGAGAATTTGATCGGAAGTCCAAGGAAGGATTAC
AGAGTTACACTTATTGTTGACGTCTCACAGTCGATGGCTGGTATGGCTGA
AATAGGAGCAACCTCACTTCTTATATCGATGGCTGGTAAGTCACATTtat
gtaattaaaaaatttattctaTTCCCTTGCCAAAGAGATGAAAAATGGCG
AAATGGAAATCTATTAGAAAAACTGCCAACTTTTCGtgttataatttata
atttcataTCGTAGCAGAGTTAGGTCTCTATGCTTCATCCGTTTTATTGA
TCATAAAATCACAAATGAGTTTCCAATTGTGATATGATTGAATGGACCTA
TTTGTATTTGTTCAGGCAACTTTTTCTAAGAGAGCAGTTTTggtaatatt
ttttatattctttcaaaattctttcGAAATAAGCCATGAAGAATcgagtt
ttcttttttattttttacagcTGCTCTACAAAACGTTGAAGTCTTATTCA
GCATAATGACGTCAGGCTCAATGACAAAACTGGTAAAAGATTTCTCTGAG
GACTGggacaataaaacaaaagcaAAGCTCTACGATGCTCTTACTTTCGA
TCAAGATGAATCAAACTTGTCTGATAGTATCTTTTACGGGACACAGCTCA
TTAACGAGGGTGCCAGTCCGAAAGTTGGTAAAACCATCATCGTACTAACT
GATGGATACCCTTCTGCACCCAAAAAGCTTCAAACAAGTTTACAATATGC
TGACAGTATGGGCGTTCAAACAATAGCTATTGGTGTAGGCTATTTCACTG
AGGgaatcttcaaatatttcccCAATTTCATACTTGCTGATGACCCTTTG
CTACTTCCAGGAGCAATGCAAAGCTTTTACCTTGGCGAGCCTCAGCTAGA
AGGAATAACGAATGTGGCAGGGCGTATCGTTGCAGAAAAGGTGTTATATA
ACGACAAACAGTTGGAAAGTATGGACGACGCTTGGAAAATGGACATCGAA
AGAGTGTACGCAGAGGAGGTGGACAAGACAAAGAAAGAACTTCGCCTAGT
TATTTACAATGCTATTCAATCTAGCATACAGCTGAAGATAAAACTTTGCT
TTGTGCTCGATACTACTGGCTCAATGACACCGTACATTGAAATGGCTAAA
GACAAGATCAAGCAAATAACAGAGAATATCAAGGCACACATTGCTGATAA
TTGCGGAAAAAATACTGATCTACAAGTTGGGTTCGTCGCATACAAAGTAC
GAGGGACCAATGGTCATCTAGAAAAAATACCCTTCACATCTGACCTACAA
GCGCTtcaagattttgtcaatttgcAGCACGCTGATGGTGGTCGTGGTGA
CGAGGACAAAGAGGACGGCATATTAACGGCTTTGGATTTTGATTGGGATG
GTGAAGCAAAGTTTCTTGTACTCATCGGTGATGTTCCTGATTATGGTACT
GTTGGTACAATGGATCAAACCATCAGAAGAATTGCACAACAGAACATATA
CATTCTATACGTCACGATCAAACCTCACCGGACGAATAAGGAGTGTGCTC
GGTTAAGAGGAGTTTACCGATCGACCGTCGACTCGAAGATTAACACCAAA
GGTTTCATGGAGATCAGTATGAGTGCTATTGGAAATGATACAAACCAGTT
GTCGGAGAAAATAGTAGATACCGTTAACACTGTCATTAACAATGAATTCA
TGTAA Coding sequence (CDS) from alignment at sc0000098_pilon:999570..1002474+ >XLOC_005165 ID=XLOC_005165|Name=XLOC_005165|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0000098_pilon:999570..1002474+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTCAAcgatcaaaaaatcttttggacATCATTGCACCCAACAACTGGCA
TCATTTAAATCCGGAAGCTGATTTTATGGACACCATCAAAGACGTAGCTG
CTTTGATCGACAACATTCTCAGAAAAAACGCCAAAGCATCCATAGGAGCA
ATAACTGCACAACATTATTCTTCACTTAAGCTTCAAcgatcaaaaaatct
tttggacATCATTGCACCCAACAACTGGCATCATTTAAATCCGGAAGCTG
ATTTTATGGACACCATCAAAGACGTAGCTGCTTTGATCGACAACATTCTC
AGAAAAAACGCCAAAGCATCCATAGGAGCAATAACTGCACAACATTATTC
TTCACTTAAGATTCCAAGTTTGGAAACAGATGATACGTTGAAGTTTGTGA
ACAAATTTGAAGGGAATAAGGAGTTGAAAATCGAATGGGGGAAATCAATT
CTTGTCAGTGACATCAACAAACCACTAGATATTGACCCTGCCGATGAGAA
AATCATTGAAGCTTTTGAGAATTTCTATCAAGCGAACAAGACCTCTTTTG
AAAGTAATAGAGAAACgccttttgaaaaagaatcccTCGTCAAGAAAGCA
AGTGCGGTCACAGCGGAAGAAAACGATGTTTTGGTGAATGCGTTGACAGA
TGTTTTGGATACAATCGCCTTACCAAACAACAGACCAACCCGACTCTTAC
AAGACTACCGTGGATCTTCATTTTCTGTACGTGGTTATATCAAGTTTGTC
TGTTCAGATGGCCAATACAAGAAGATCTACGAGAATTTGATCGGAAGTCC
AAGGAAGGATTACAGAGTTACACTTATTGTTGACGTCTCACAGTCGATGG
CTGGTATGGCTGAAATAGGAGCAACCTCACTTCTTATATCGATGGCTGAT
TCCAAGTTTGGAAACAGATGATACGTTGAAGTTTGTGAACAAATTTGAAG
GGAATAAGGAGTTGAAAATCGAATGGGGGAAATCAATTCTTGTCAGTGAC
ATCAACAAACCACTAGATATTGACCCTGCCGATGAGAAAATCATTGAAGC
TTTTGAGAATTTCTATCAAGCGAACAAGACCTCTTTTGAAAGTAATAGAG
AAACgccttttgaaaaagaatcccTCGTCAAGAAAGCAAGTGCGGTCACA
GCGGAAGAAAACGATGTTTTGGTGAATGCGTTGACAGATGTTTTGGATAC
AATCGCCTTACCAAACAACAGACCAACCCGACTCTTACAAGACTACCGTG
GATCTTCATTTTCTGTACGTGGTTATATCAAGTTTGTCTGTTCAGATGGC
CAATACAAGAAGATCTACGAGAATTTGATCGGAAGTCCAAGGAAGGATTA
CAGAGTTACACTTATTGTTGACGTCTCACAGTCGATGGCTGGTATGGCTG
AAATAGGAGCAACCTCACTTCTTATATCGATGGCTGcTGCTCTACAAAAC
GTTGAAGTCTTATTCAGCATAATGACGTCAGGCTCAATGACAAAACTGGT
AAAAGATTTCTCTGAGGACTGggacaataaaacaaaagcaAAGCTCTACG
ATGCTCTTACTTTCGATCAAGATGAATCAAACTTGTCTGATAGTATCTTT
TACGGGACACAGCTCATTAACGAGGGTGCCAGTCCGAAAGTTGGTAAAAC
CATCATCGTACTAACTGATGGATACCCTTCTGCACCCAAAAAGCTTCAAA
CAAGTTTACAATATGCTGACAGTATGGGCGTTCAAACAATAGCTATTGGT
GTAGGCTATTTCACTGAGGgaatcttcaaatatttcccCAATTTCATACT
TGCTGATGACCCTTTGCTACTTCCAGGAGCAATGCAAAGCTTTTACCTTG
GCGAGCCTCAGCTAGAAGGAATAACGAATGTGGCAGGGCGTATCGTTGCA
GAAAAGGTGTTATATAACGACAAACAGTTGGAAAGTATGGACGACGCTTG
GAAAATGGACATCGAAAGAGTGTACGCAGAGGAGGTGGACAAGACAAAGA
AAGAACTTCGCCTAGTTATTTACAATGCTATTCAATCTAGCATACAGCTG
AAGATAAAACTTTGCTTTGTGCTCGATACTACTGGCTCAATGACACCGTA
CATTGAAATGGCTAAAGACAAGATCAAGCAAATAACAGAGAATATCAAGG
CACACATTGCTGATAATTGCGGAAAAAATACTGATCTACAAGTTGGGTTC
GTCGCATACAAAGTACGAGGGACCAATGGTCATCTAGAAAAAATACCCTT
CACATCTGACCTACAAGCGCTtcaagattttgtcaatttgcAGCACGCTG
ATGGTGGTCGTGGTGACGAGGACAAAGAGGACGGCATATTAACGGCTTTG
GATTTTGATTGGGATGGTGAAGCAAAGTTTCTTGTACTCATCGGTGATGT
TCCTGATTATGGTACTGTTGGTACAATGGATCAAACCATCAGAAGAATTG
CACAACAGAACATATACATTCTATACGTCACGATCAAACCTCACCGGACG
AATAAGGAGTGTGCTCGGTTAAGAGGAGTTTACCGATCGACCGTCGACTC
GAAGATTAACACCAAAGGTTTCATGGAGATCAGTATGAGTGCTATTGGAA
ATGATACAAACCAGTTGTCGGAGAAAATAGTAGATACCGTTAACACTGTC
ATTAACAATGAATTCATGTAAcTGCTCTACAAAACGTTGAAGTCTTATTC
AGCATAATGACGTCAGGCTCAATGACAAAACTGGTAAAAGATTTCTCTGA
GGACTGggacaataaaacaaaagcaAAGCTCTACGATGCTCTTACTTTCG
ATCAAGATGAATCAAACTTGTCTGATAGTATCTTTTACGGGACACAGCTC
ATTAACGAGGGTGCCAGTCCGAAAGTTGGTAAAACCATCATCGTACTAAC
TGATGGATACCCTTCTGCACCCAAAAAGCTTCAAACAAGTTTACAATATG
CTGACAGTATGGGCGTTCAAACAATAGCTATTGGTGTAGGCTATTTCACT
GAGGgaatcttcaaatatttcccCAATTTCATACTTGCTGATGACCCTTT
GCTACTTCCAGGAGCAATGCAAAGCTTTTACCTTGGCGAGCCTCAGCTAG
AAGGAATAACGAATGTGGCAGGGCGTATCGTTGCAGAAAAGGTGTTATAT
AACGACAAACAGTTGGAAAGTATGGACGACGCTTGGAAAATGGACATCGA
AAGAGTGTACGCAGAGGAGGTGGACAAGACAAAGAAAGAACTTCGCCTAG
TTATTTACAATGCTATTCAATCTAGCATACAGCTGAAGATAAAACTTTGC
TTTGTGCTCGATACTACTGGCTCAATGACACCGTACATTGAAATGGCTAA
AGACAAGATCAAGCAAATAACAGAGAATATCAAGGCACACATTGCTGATA
ATTGCGGAAAAAATACTGATCTACAAGTTGGGTTCGTCGCATACAAAGTA
CGAGGGACCAATGGTCATCTAGAAAAAATACCCTTCACATCTGACCTACA
AGCGCTtcaagattttgtcaatttgcAGCACGCTGATGGTGGTCGTGGTG
ACGAGGACAAAGAGGACGGCATATTAACGGCTTTGGATTTTGATTGGGAT
GGTGAAGCAAAGTTTCTTGTACTCATCGGTGATGTTCCTGATTATGGTAC
TGTTGGTACAATGGATCAAACCATCAGAAGAATTGCACAACAGAACATAT
ACATTCTATACGTCACGATCAAACCTCACCGGACGAATAAGGAGTGTGCT
CGGTTAAGAGGAGTTTACCGATCGACCGTCGACTCGAAGATTAACACCAA
AGGTTTCATGGAGATCAGTATGAGTGCTATTGGAAATGATACAAACCAGT
TGTCGGAGAAAATAGTAGATACCGTTAACACTGTCATTAACAATGAATTC
ATGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098_pilon | genome | sc0000098_pilon:999570..1002474 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2524-3756:1673 |
| Aaloc | 1984-2520:798 |
| Aaloc | 1804-1983:1 |
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