XLOC_005164 (mRNA) -

Overview


Name	XLOC_005164
Unique Name	XLOC_005164
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000098_pilon:987251..990643+
coding sequence from alignment at sc0000098_pilon:987251..990643+

mRNA from alignment at sc0000098_pilon:987251..990643+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_005164 ID=XLOC_005164|Name=XLOC_005164|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3393bp|location=Sequence derived from alignment at sc0000098_pilon:987251..990643+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAAGCAATTCTAAATAAATACACGGAGATCTATACTTCTAAATGTTC
CAAACAAGTGAAGCAAAGAGCTATCTCTGTGAAAAGTCTTTGTGAAGAAG
CTGACAATTATTTTGTAACATCTTTCCTACTAAACGAATATCTTGAAGGT
GCATCAATATTGGATCAAATTATCGTGACGGACGACCTTCTAACAGGCCT
AAAAACCCTAGTTGCTGAGTCAGGGTTACaaaaaaaGATTGCGAATTCAG
GAGTATCAGAAAGTGTGTCACAAGACCCTTGTTCCACGAAGGTGATCGAC
AATTTGAGTGACTTCTTTCACCGATGTAAAATTGACGATACGAAAGGGGC
TATTCAAATGATGAAGGAATTGGAAGCCAATGGAAGAAGTTTACATCTAC
GTTACCAAGATTTGCTAAATTCTATGACACCAGTCAGCCTCGGAGAGAAG
ACACATCTTTTACGTTTTATCAAACAAAACGAAAATGTTTCATCGGTGAA
GACAATCGGTATCTTGCAAAGTAGATGTTCTGAGATTGTAGTAGCCGACT
GTTTAGTTATCTGTCAACTGAACGAGCAACTCAACTGTATTATCAATGAC
CTTTATCTTCATGTTGAGAAAGGCAGTACAGCCGATCCTTTCGATTACAC
GTGTAAAGCAGTTTACATGGTGGAAGATTGTGTTGAATTCCTGCTGTTAC
ATGGCTTCAAAATCGAAGACAACCTTGTAGTGCCATCCCATGATTTGCAG
CAAGTATTAGAACAAGTCGAAAGTATCATCAACgactttataaagaaaaa
tgtacaCAAAGGAGATATCAGAGAGTTCAAATTTAACATCGATATTTGCA
AAGAGATAGATATATCTGACAATGAAGTAAAGGAGACAACATCTACTCAT
CACATTATCCCTCAAAGACAGAACAACGTTCATTACATTTCAATACCGAA
AAGCACGATCATTGATGAAGTCCAAAAATTGACAGAGGCTAATTCGAAAG
CATTCCGCTATggttttaatcattttttgcaACGTGTAACCTCTCTCATA
GAGGAAATACAGTCACTGTCTGTTAATGTAGAAGTCAATCATTGGCAGCG
CTTAAAGAATGATGTAAATAAAATCATCACAGAAATTGAAAGCATTTGCA
CTAAGGCGAGAAGAGAGAAGATCTCCGGTACTTTAGAACTTCCGTGGCTa
aaaaaaCCACCTGACTTAGACACTGATAAAATGAGTTTCTCACATTCACC
TCCATCAGCCGCAGAACAAACGAAGGATATGCAACAAATGCAAACAATGA
ATGGAGAAGACTTTTTACAGTGtttttttGGTAGTTCATACTCAAACTTT
GTTTTCCTTCAAAAGAAAGCACCTAAAGAACTAagacaaaaatttcaaga
acGGTTCCACTTCTCAAAAGAATATCCTAGTAAAGGTCGGATAACGAAAA
ATGTTCTGGAATGGTTGCTGTCATACCTGAAATTTCTGAATTGCAAAGAA
GATGTCAACAAGTTCGAAAGGATGTTAGAAAACTTACGGAAATGTAACAT
GTCAAAGTGCGCAACCAAAACAATTCTTCGGTGTTTTGATCCTGCTGAAA
AAGAAGCTGTCTCTGCGATGTTGATATCAGTGAAAAATGCCATCGAATCA
CCGGAGTGCTTAATATACATTAACAAGGCAGAAATAAGCATACAAGAAAA
TAAACAAGTCGATTTGGAATTTAATCTCAAGCAAATATGTCAAGTCATTT
TCAAAGAGCGTCTTCAATCACTTAACCGATTAGAGTTCAATTCAGTGAAG
TCGTTGACCGAATTCGCCTATCTTCAAATGACATCATCCCCTGCTCAGCT
TGGGCAAGTCTGGCTAAGCTTACAAAACTCACACCAAGCACTAAAGCACC
TTGATCAACATTTGTTTTTGTATAGCGAAAGACAACAATCACCTTTCATT
CAAATGGACTATCTTGACGTTGAAGATTTCCTCATGTTTTTCACCAGAGA
TCCAGCTCTTTCTCTGAGCCTTTcaaagaaagagaaaattacAAACGAAG
ATTCGCGTCAAGAAAAAGATATCGTTCAAGCTGTTAAAGAAAGATTTAGA
TCAGGAGATGTTTATATCATGAAAGAAGACATCATCACCTCCATTGCCAG
AGATTGCTACAATACTTTTTGTATGttgtcaaaaaattgcaaagataGTA
TAGAGTCAATTCCGGGTACCATCTTTTGTAACGTAGCGTACCTGCATCTG
CTCACTGACTTTTGGTCAAGCGTTGAAAATATTTATGAATATCTCAAAGA
AACACTATCAAGTGACTTTCACAAGTCGCAAAATTTCTTCAGTTGCagaa
aaagccaatttttttcaacagaAATACAACGTCGCAGGAAGAATCTAGAT
AAAAACAGACAAGAGCTCGAAATTacggtgaaaaagaaaatgaaagaaaa
cgaaGGAAATCCAAGCTACGATGAATTCGATCAAAACGAGATCGAACGAC
TGCAATCAGTgattaaaaaattgcaaaaggAAATTGAcgaatgtgaaaaa
aatttccaaagttttgtCTTTTCCCAACTCGAAATCTTCAAACCTGCAAT
TACTGCCCTTGGGAAAACAATTCATACCAAATACCAAGGCATTCTTGACT
CCATACAACATTTTGTTGGAGGTGAAACCCATTATCTCGATTCCACTTTC
TTCGTTGATCTTCATCGCACTTCGAACAGTACATTCGTTTCTGAAGAATA
TTTGATCAAATTGAGAGAAATGAAATCCAAAATTGTACGTACGATGGATT
GTAAGAATGAAAAGGAGAATAAGAATCGGACGAATCAAGTTTTGGGCAAt
tcaaaactttacgatataCTCAACGAAATCAGCGAGTTTGGGTCGTGCGC
TGTTAAATCACTTGTGCGAGCCCTTGATACTTTTGTGGAAGTTGCTTCCG
AATCCGAGGAAGAAAAATTAACCAAAAGAAGAACCATCGAGATCGGAGAA
AGAATTGAATACTTTGTTACTATGACATTGTGCCACGAAGAGAGTTCTCG
TGAGAGAGCTTTCATTACTCCATCTGTGGAATTAGCTAAGTCTTTTGAAT
CTTTATATTTGGATTTGCTGCAACAGAGAAAAAACTTTCCTTCGACCGGC
CGACAATGGACCAAAGATTACATCGTGTACTTGCAAAGAATTCTATGTCA
GTTgatcaaatattttcataccGACCTAAGAGATCACTACAATTCAAGTG
TCTTCGGCGATTTAAAACTAGACGAAATCGACCTCGGAATGatagaaaaa
agtaaaatcagagAAATCTTGGCGAAAGAGCGGGCTTCAATTAAGTTTTG
CGAAGATGGAATATCATCATCAGCATTGAAAGATAAATTTGCT

Coding sequence (CDS) from alignment at sc0000098_pilon:987251..990643+

>XLOC_005164 ID=XLOC_005164|Name=XLOC_005164|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6786bp|location=Sequence derived from alignment at sc0000098_pilon:987251..990643+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAAAAGCAATTCTAAATAAATACACGGAGATCTATACTTCTAAATGTTC
CAAACAAGTGAAGCAAAGAGCTATCTCTGTGAAAAGTCTTTGTGAAGAAG
CTGACAATTATTTTGTAACATCTTTCCTACTAAACGAATATCTTGAAGGT
GCATCAATATTGGATCAAATTATCGTGACGGACGACCTTCTAACAGGCCT
AAAAACCCTAGTTGCTGAGTCAGGGTTACaaaaaaaGATTGCGAATTCAG
GAGTATCAGAAAGTGTGTCACAAGACCCTTGTTCCACGAAGGTGATCGAC
AATTTGAGTGACTTCTTTCACCGATGTAAAATTGACGATACGAAAGGGGC
TATTCAAATGATGAAGGAATTGGAAGCCAATGGAAGAAGTTTACATCTAC
GTTACCAAGATTTGCTAAATTCTATGACACCAGTCAGCCTCGGAGAGAAG
ACACATCTTTTACGTTTTATCAAACAAAACGAAAATGTTTCATCGGTGAA
GACAATCGGTATCTTGCAAAGTAGATGTTCTGAGATTGTAGTAGCCGACT
GTTTAGTTATCTGTCAACTGAACGAGCAACTCAACTGTATTATCAATGAC
CTTTATCTTCATGTTGAGAAAGGCAGTACAGCCGATCCTTTCGATTACAC
GTGTAAAGCAGTTTACATGGTGGAAGATTGTGTTGAATTCCTGCTGTTAC
ATGGCTTCAAAATCGAAGACAACCTTGTAGTGCCATCCCATGATTTGCAG
CAAGTATTAGAACAAGTCGAAAGTATCATCAACgactttataaagaaaaa
tgtacaCAAAGGAGATATCAGAGAGTTCAAATTTAACATCGATATTTGCA
AAGAGATAGATATATCTGACAATGAAGTAAAGGAGACAACATCTACTCAT
CACATTATCCCTCAAAGACAGAACAACGTTCATTACATTTCAATACCGAA
AAGCACGATCATTGATGAAGTCCAAAAATTGACAGAGGCTAATTCGAAAG
CATTCCGCTATggttttaatcattttttgcaACGTGTAACCTCTCTCATA
GAGGAAATACAGTCACTGTCTGTTAATGTAGAAGTCAATCATTGGCAGCG
CTTAAAGAATGATGTAAATAAAATCATCACAGAAATTGAAAGCATTTGCA
CTAAGGCGAGAAGAGAGAAGATCTCCGGTACTTTAGAACTTCCGTGGCTa
aaaaaaCCACCTGACTTAGACACTGATAAAATGAGTTTCTCACATTCACC
TCCATCAGCCGCAGAACAAACGAAGGATATGCAACAAATGCAAACAATGA
ATGGAGAAGACTTTTTACAGTGtttttttGGTAGTTCATACTCAAACTTT
GTTTTCCTTCAAAAGAAAGCACCTAAAGAACTAagacaaaaatttcaaga
acGGTTCCACTTCTCAAAAGAATATCCTAGTAAAGGTCGGATAACGAAAA
ATGTTCTGGAATGGTTGCTGTCATACCTGAAATTTCTGAATTGCAAAGAA
GATGTCAACAAGTTCGAAAGGATGTTAGAAAACTTACGGAAATGTAACAT
GTCAAAGTGCGCAACCAAAACAATTCTTCGGTGTTTTGATCCTGCTGAAA
AAGAAGCTGTCTCTGCGATGTTGATATCAGTGAAAAATGCCATCGAATCA
CCGGAGTGCTTAATATACATTAACAAGGCAGAAATAAGCATACAAGAAAA
TAAACAAGTCGATTTGGAATTTAATCTCAAGCAAATATGTCAAGTCATTT
TCAAAGAGCGTCTTCAATCACTTAACCGATTAGAGTTCAATTCAGTGAAG
TCGTTGACCGAATTCGCCTATCTTCAAATGACATCATCCCCTGCTCAGCT
TGGGCAAGTCTGGCTAAGCTTACAAAACTCACACCAAGCACTAAAGCACC
TTGATCAACATTTGTTTTTGTATAGCGAAAGACAACAATCACCTTTCATT
CAAATGGACTATCTTGACGTTGAAGATTTCCTCATGTTTTTCACCAGAGA
TCCAGCTCTTTCTCTGAGCCTTTcaaagaaagagaaaattacAAACGAAG
ATTCGCGTCAAGAAAAAGATATCGTTCAAGCTGTTAAAGAAAGATTTAGA
TCAGGAGATGTTTATATCATGAAAGAAGACATCATCACCTCCATTGCCAG
AGATTGCTACAATACTTTTTGTATGttgtcaaaaaattgcaaagataGTA
TAGAGTCAATTCCGGGTACCATCTTTTGTAACGTAGCGTACCTGCATCTG
CTCACTGACTTTTGGTCAAGCGTTGAAAATATTTATGAATATCTCAAAGA
AACACTATCAAGTGACTTTCACAAGTCGCAAAATTTCTTCAGTTGCagaa
aaagccaatttttttcaacagaAATACAACGTCGCAGGAAGAATCTAGAT
AAAAACAGACAAGAGCTCGAAATTacggtgaaaaagaaaatgaaagaaaa
cgaaGGAAATCCAAGCTACGATGAATTCGATCAAAACGAGATCGAACGAC
TGCAATCAGTgattaaaaaattgcaaaaggAAATTGAcgaatgtgaaaaa
aatttccaaagttttgtCTTTTCCCAACTCGAAATCTTCAAACCTGCAAT
TACTGCCCTTGGGAAAACAATTCATACCAAATACCAAGGCATTCTTGACT
CCATACAACATTTTGTTGGAGGTGAAACCCATTATCTCGATTCCACTTTC
TTCGTTGATCTTCATCGCACTTCGAACAGTACATTCGTTTCTGAAGAATA
TTTGATCAAATTGAGAGAAATGAAATCCAAAATTGTACGTACGATGGATT
GTAAGAATGAAAAGGAGAATAAGAATCGGACGAATCAAGTTTTGGGCAAt
tcaaaactttacgatataCTCAACGAAATCAGCGAGTTTGGGTCGTGCGC
TGTTAAATCACTTGTGCGAGCCCTTGATACTTTTGTGGAAGTTGCTTCCG
AATCCGAGGAAGAAAAATTAACCAAAAGAAGAACCATCGAGATCGGAGAA
AGAATTGAATACTTTGTTACTATGACATTGTGCCACGAAGAGAGTTCTCG
TGAGAGAGCTTTCATTACTCCATCTGTGGAATTAGCTAAGTCTTTTGAAT
CTTTATATTTGGATTTGCTGCAACAGAGAAAAAACTTTCCTTCGACCGGC
CGACAATGGACCAAAGATTACATCGTGTACTTGCAAAGAATTCTATGTCA
GTTgatcaaatattttcataccGACCTAAGAGATCACTACAATTCAAGTG
TCTTCGGCGATTTAAAACTAGACGAAATCGACCTCGGAATGatagaaaaa
agtaaaatcagagAAATCTTGGCGAAAGAGCGGGCTTCAATTAAGTTTTG
CGAAGATGGAATATCATCATCAGCATTGAAAGATAAATTTGCTGGAAAAG
CAATTCTAAATAAATACACGGAGATCTATACTTCTAAATGTTCCAAACAA
GTGAAGCAAAGAGCTATCTCTGTGAAAAGTCTTTGTGAAGAAGCTGACAA
TTATTTTGTAACATCTTTCCTACTAAACGAATATCTTGAAGGTGCATCAA
TATTGGATCAAATTATCGTGACGGACGACCTTCTAACAGGCCTAAAAACC
CTAGTTGCTGAGTCAGGGTTACaaaaaaaGATTGCGAATTCAGGAGTATC
AGAAAGTGTGTCACAAGACCCTTGTTCCACGAAGGTGATCGACAATTTGA
GTGACTTCTTTCACCGATGTAAAATTGACGATACGAAAGGGGCTATTCAA
ATGATGAAGGAATTGGAAGCCAATGGAAGAAGTTTACATCTACGTTACCA
AGATTTGCTAAATTCTATGACACCAGTCAGCCTCGGAGAGAAGACACATC
TTTTACGTTTTATCAAACAAAACGAAAATGTTTCATCGGTGAAGACAATC
GGTATCTTGCAAAGTAGATGTTCTGAGATTGTAGTAGCCGACTGTTTAGT
TATCTGTCAACTGAACGAGCAACTCAACTGTATTATCAATGACCTTTATC
TTCATGTTGAGAAAGGCAGTACAGCCGATCCTTTCGATTACACGTGTAAA
GCAGTTTACATGGTGGAAGATTGTGTTGAATTCCTGCTGTTACATGGCTT
CAAAATCGAAGACAACCTTGTAGTGCCATCCCATGATTTGCAGCAAGTAT
TAGAACAAGTCGAAAGTATCATCAACgactttataaagaaaaatgtacaC
AAAGGAGATATCAGAGAGTTCAAATTTAACATCGATATTTGCAAAGAGAT
AGATATATCTGACAATGAAGTAAAGGAGACAACATCTACTCATCACATTA
TCCCTCAAAGACAGAACAACGTTCATTACATTTCAATACCGAAAAGCACG
ATCATTGATGAAGTCCAAAAATTGACAGAGGCTAATTCGAAAGCATTCCG
CTATggttttaatcattttttgcaACGTGTAACCTCTCTCATAGAGGAAA
TACAGTCACTGTCTGTTAATGTAGAAGTCAATCATTGGCAGCGCTTAAAG
AATGATGTAAATAAAATCATCACAGAAATTGAAAGCATTTGCACTAAGGC
GAGAAGAGAGAAGATCTCCGGTACTTTAGAACTTCCGTGGCTaaaaaaaC
CACCTGACTTAGACACTGATAAAATGAGTTTCTCACATTCACCTCCATCA
GCCGCAGAACAAACGAAGGATATGCAACAAATGCAAACAATGAATGGAGA
AGACTTTTTACAGTGtttttttGGTAGTTCATACTCAAACTTTGTTTTCC
TTCAAAAGAAAGCACCTAAAGAACTAagacaaaaatttcaagaacGGTTC
CACTTCTCAAAAGAATATCCTAGTAAAGGTCGGATAACGAAAAATGTTCT
GGAATGGTTGCTGTCATACCTGAAATTTCTGAATTGCAAAGAAGATGTCA
ACAAGTTCGAAAGGATGTTAGAAAACTTACGGAAATGTAACATGTCAAAG
TGCGCAACCAAAACAATTCTTCGGTGTTTTGATCCTGCTGAAAAAGAAGC
TGTCTCTGCGATGTTGATATCAGTGAAAAATGCCATCGAATCACCGGAGT
GCTTAATATACATTAACAAGGCAGAAATAAGCATACAAGAAAATAAACAA
GTCGATTTGGAATTTAATCTCAAGCAAATATGTCAAGTCATTTTCAAAGA
GCGTCTTCAATCACTTAACCGATTAGAGTTCAATTCAGTGAAGTCGTTGA
CCGAATTCGCCTATCTTCAAATGACATCATCCCCTGCTCAGCTTGGGCAA
GTCTGGCTAAGCTTACAAAACTCACACCAAGCACTAAAGCACCTTGATCA
ACATTTGTTTTTGTATAGCGAAAGACAACAATCACCTTTCATTCAAATGG
ACTATCTTGACGTTGAAGATTTCCTCATGTTTTTCACCAGAGATCCAGCT
CTTTCTCTGAGCCTTTcaaagaaagagaaaattacAAACGAAGATTCGCG
TCAAGAAAAAGATATCGTTCAAGCTGTTAAAGAAAGATTTAGATCAGGAG
ATGTTTATATCATGAAAGAAGACATCATCACCTCCATTGCCAGAGATTGC
TACAATACTTTTTGTATGttgtcaaaaaattgcaaagataGTATAGAGTC
AATTCCGGGTACCATCTTTTGTAACGTAGCGTACCTGCATCTGCTCACTG
ACTTTTGGTCAAGCGTTGAAAATATTTATGAATATCTCAAAGAAACACTA
TCAAGTGACTTTCACAAGTCGCAAAATTTCTTCAGTTGCagaaaaagcca
atttttttcaacagaAATACAACGTCGCAGGAAGAATCTAGATAAAAACA
GACAAGAGCTCGAAATTacggtgaaaaagaaaatgaaagaaaacgaaGGA
AATCCAAGCTACGATGAATTCGATCAAAACGAGATCGAACGACTGCAATC
AGTgattaaaaaattgcaaaaggAAATTGAcgaatgtgaaaaaaatttcc
aaagttttgtCTTTTCCCAACTCGAAATCTTCAAACCTGCAATTACTGCC
CTTGGGAAAACAATTCATACCAAATACCAAGGCATTCTTGACTCCATACA
ACATTTTGTTGGAGGTGAAACCCATTATCTCGATTCCACTTTCTTCGTTG
ATCTTCATCGCACTTCGAACAGTACATTCGTTTCTGAAGAATATTTGATC
AAATTGAGAGAAATGAAATCCAAAATTGTACGTACGATGGATTGTAAGAA
TGAAAAGGAGAATAAGAATCGGACGAATCAAGTTTTGGGCAAttcaaaac
tttacgatataCTCAACGAAATCAGCGAGTTTGGGTCGTGCGCTGTTAAA
TCACTTGTGCGAGCCCTTGATACTTTTGTGGAAGTTGCTTCCGAATCCGA
GGAAGAAAAATTAACCAAAAGAAGAACCATCGAGATCGGAGAAAGAATTG
AATACTTTGTTACTATGACATTGTGCCACGAAGAGAGTTCTCGTGAGAGA
GCTTTCATTACTCCATCTGTGGAATTAGCTAAGTCTTTTGAATCTTTATA
TTTGGATTTGCTGCAACAGAGAAAAAACTTTCCTTCGACCGGCCGACAAT
GGACCAAAGATTACATCGTGTACTTGCAAAGAATTCTATGTCAGTTgatc
aaatattttcataccGACCTAAGAGATCACTACAATTCAAGTGTCTTCGG
CGATTTAAAACTAGACGAAATCGACCTCGGAATGatagaaaaaagtaaaa
tcagagAAATCTTGGCGAAAGAGCGGGCTTCAATTAAGTTTTGCGAAGAT
GGAATATCATCATCAGCATTGAAAGATAAATTTGCT

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_005164	XLOC_005164-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000098_pilon	genome	sc0000098_pilon:987251..990643 +

Properties


Property Name	Value
Aaloc	1-3393:1

You are here

XLOC_005164 (mRNA) -