|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000098_pilon:947364..951280+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005163 ID=XLOC_005163|Name=XLOC_005163|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3917bp|location=Sequence derived from alignment at sc0000098_pilon:947364..951280+ (Clytia hemisphaerica_ch_hm2_pilon)
atttttttgaatttttctaaatatataaatcaaaccaatcaaacattctc
TCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTCGC
GAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTAAT
GACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACTGA
GAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGAAT
TAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTCGT
GAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATCCT
TGGCAAAAGAGTTGGTATGTATTTTTAGAATGTGCTCCTATACTTCTTTT
TCTTTACCATTATCCTAAAGTTGAAAgttcacaatttttttaatttttga
atacTAGGCTCCTCAGATGTTTGATAGATTGACTATTCTTATCATAATAG
CTTCATCCCCCATTCTCTGCCTGCAGGAGCCTTTAGGAGACggaattttt
ctgaaatttcataaGGGTACTTTCAACTTCAAAGGGAAACTGCTAACTCG
ATTCAATAATTTTTATGTAATTATTAAATCCAAGGGGGATCTTTTGATCT
TGCATTTGTAGGGTACTTAGGTCTCAGGAAAGGGACCTAAATTCTTTAGA
GTTATGAACCTTTTAAGTTATTTTGTTTCTTTAACACTCAACAGCGCCAA
ATATATGCTAAtttttttCTGACCTCTAGATGTCAACTTGGCTGGTTTGC
GTCGAAAGACACAATTGAAAGATAAATATGAAAAACCACCAGACAAAGAA
GAAGTTGTACCAGATGATATGCGCAAATTTAGCGAACAAGCATCACGCaa
aaaaaGGAGGGATAGGTCAAGGTAAGCATTTTTTAATAGGTCTCGAATAC
TCAGTCCATTCTTCATGGTGTGAATCACCTCCAATAAAGGTAGGAGGGTT
AATAATATTTTGTTTAAATGTATCACATCTCTGTCATATATGGGTGAATT
GCGCCAAATCTGTACCGTGGTTTTGTAAACAAGGCAAACTGTATTCAAAT
TATCATTAAAGTGGATGTGTCAGGTATTAGAGCTTTAGGTATATTTCTTC
TTTGTAATATTAGCAAAAATCTGTTATGGACGGGACGTCCCGTCCATCAC
ACATATGCCTGTCTTTCTACCAGATTTTTGAAGacagtttgttttgtttt
caaaaccacGGTACAGATTTGGTGCAATGCACCCATATTGGTTAGCAAAA
GTTTTGCCTGCGCTGCCATTTACATCAATCTACTGTTGAAATTTTTGTGT
AGTTAAAAGGTTGATAGACCACCACTGTAAATAGTGGGAGGTcgtgaaat
ttcaaaaagggAGGAAACAATATAAATACGGGTGTGGAGTTCCCTCTAAA
GCTTTCTGCATCTATAATAAGTTTGATGACAAATTCCTTTTTCGATTCAC
TGCACTCCCTGAATATAAAAATGTTCTCGCAACATACTAGTCAGGCCAAC
ATTAGATAAATCGGTAAATAATATACTATTGAAGTTTTATCAAAACCATG
TCCTTTTTCACTCCACCAGATCACCACGCAGAGAAGGTCGTGGTGGTGAT
CGAAGAAGATCACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGAGG
TCCTGGGTATCATGACAGGTTAAccattaaaatttgatacttTTCACAAG
GATGAAACTTCTTTTGACggaattaatattttttaaagtttaatttttca
ctttttgaacgGACTTTGGAAAACAAATGAGTGGAAAATATAAGCGGATa
tttgaatatctttccaacgttaCCAAtttttttACTATATGACGAACACT
TGGTAAGTTTCGGTTAAAAATAAATGCACACCTTTTTGACACAGACTTTA
GACGGAAGGAATAACAAGGAATTTATGAATTAAATGTTCTCTACAGAAGA
TTATGTTTCTCACACCTTTTCCTTTTTCACAGACCTTATGAAAGAGACAC
GGGATATGGTCGTGCACCGCCTCCATCAGCCGCCGGTGGTTACAACTACC
CACCACGTGATCCATATGCTTATCACCCTCCAGCACCTCGTGTTGCTCCA
AGACCTGCTATTGATTGTGAAGTTGTTGCATTGTCGAAGGAAGATAGGTA
TTGCGTCTTGTATTTTTTCTTGGGCGAGATTTCGTTATTAGACTGGTTGT
ATGAAACGGTTGGGTTACTTAGATAAATGTATGCAAACAGGTCTGTAGGT
GTTTTTTCACTGGAAGACAGTCTTGATATATTGTTGTACGTgaagaaaat
taaagaattcctgtccaactatcttccttcaggagatttgggtggcagag
cagccaGCATATGCATTTCCTCCTTATTaagactcgtcagcactgcatac
tgcaccctggctaggcAGATCGAATTGCCTAGCATCTCACACCATAAAAC
TAATTCTGGTGCAGACTGAAATAGATATATAGTGCATATTGCATTAGATT
GAGCCAAAGTTCAGAGAGTTCCTTAAAACTCGTTGATTGTTCCTcacatt
ttaaagattttgagatCAAGGGTTGAAAGTACCTTTTAGTCATTCAAAAC
TCATTAAATTTGAACTTTCATCGTCAATTCATTCTTTTCAGTCGCTATGC
AGAAGATGTGGAGAGTCGTTTGCGAAGTATTGGCCTGGTTTGCAATATTG
GTTACCCACCCATCGATTTATCCACAGTTGAAGTTGTCGATCGAATCGCT
CGCTGTGGTACTCTGTACGCCATTGTTCTCAGCTCTCAAAACGCCACCCA
TCAATCGTGCACACTGAATGTTTTACATGGTGCAAGACAAGGTTTGTTTG
TCCATCTTTTTCAGATACTTTCCTCTACTGTTTAAAGCTTTCGAACTCTC
TTGAAGATATTTATATTGAGAAGAGCTTTTAAAATCATGTTTTAAGCAAG
CAGAGTGACTTGTGCTGTCTGACTTAAAATTGAATATTATAtttcaggtt
taacaacttttccacggacatttttctcaccgactttttcgtttttcttc
tttttcatttttcactcattttcgATGACCATCAACACCTTTTTGATGAC
ATGCAGAACACCGTAACATGCCGCTCAAAGATGCTCTCTCTTTTGTGGCT
AGAAATTTCGACCAATACCTCAAAGACTTGAGTAGGGAGCCTCCTCCCCC
TTCTTCTTACTACCCTTCATCATATAACTACCCACCCCCTCCTCGTGCAG
ATTACGGTAGAGGGTACCCACCAGAACCTGCATACGGAGGCTATGGTGGG
CAACATAGCTACCCACCTCCTCGGCATACGGAACAACCAGCCTACAGGAG
TGAGGAACGGGTAGGTGGTTATGATGATAGGGGAAGTATAAGTAGTCAGG
GGAGCGAAAGGAGCTCAGAGACCAAAAAACTCTCAGCTGAGGAGCTGAAT
GAAATGATCGAAAAATTGAAACGTGAGAAAGAACAGTTAGGTAAGCAcaa
ttttcctttattttgttttgttttactttgatcttgttttttatatttgt
ttgtttttgatatttgatGGCTATGTGAGTGCATGAAATCTAATACAAAT
GAGacggagtttttataagatactttaataattggtcatttgaagtagta
aagatgatgcgttctttagaaaatttAATATGGAGAAAGTCATTCAGGTA
TTTCTTATTACAATGAATTTGGCtacatttattaatttttacaatttaac
tTCATTTCTATATTTTCTGTTATTCTTTTAGAAATTGCTGGCTCCGTTGT
AAAACCTGCTACAGAAACACGTGAAAAGTCAGCAGAACCAGTACCTGCTG
CTAATGGCGATCAATAA Coding sequence (CDS) from alignment at sc0000098_pilon:947364..951280+ >XLOC_005163 ID=XLOC_005163|Name=XLOC_005163|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000098_pilon:947364..951280+ (Clytia hemisphaerica_ch_hm2_pilon)
atttttttgaatttttctaaatatataaatcaaaccaatcaaacattctc
TCTATACATGAATTCAATTTTAGATAAGTTTAACTTTAAAAGCATGTCGC
GAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAAATACAAACAGTAAT
GACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGAAACTTGAACACTGA
GAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAACAAGTTTGGAGAAT
TAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTGTGCAATTTGTTCGT
GAAAAAGATGCGGATGCTGCTGTTACAGCGATGCATGGCAAGATGATCCT
TGGCAAAAGAGTTGatttttttgaatttttctaaatatataaatcaaacc
aatcaaacattctcTCTATACATGAATTCAATTTTAGATAAGTTTAACTT
TAAAAGCATGTCGCGAAGCCCGCCAAGAAATATTATACCAGCTGGTAGAA
ATACAAACAGTAATGACTCTCTTTCAATGCGTCGAAGAGTTTTCATTGGA
AACTTGAACACTGAGAAAACTTCGAAAACAGAAGTTGAAGAAATATTCAA
CAAGTTTGGAGAATTAGAAAGTTGTTCTTTACACAAGAATTTTGGATTTG
TGCAATTTGTTCGTGAAAAAGATGCGGATGCTGCTGTTACAGCGATGCAT
GGCAAGATGATCCTTGGCAAAAGAGTTGATGTCAACTTGGCTGGTTTGCG
TCGAAAGACACAATTGAAAGATAAATATGAAAAACCACCAGACAAAGAAG
AAGTTGTACCAGATGATATGCGCAAATTTAGCGAACAAGCATCACGCaaa
aaaaGGAGGGATAGGTCAAGATGTCAACTTGGCTGGTTTGCGTCGAAAGA
CACAATTGAAAGATAAATATGAAAAACCACCAGACAAAGAAGAAGTTGTA
CCAGATGATATGCGCAAATTTAGCGAACAAGCATCACGCaaaaaaaGGAG
GGATAGGTCAAGATCACCACGCAGAGAAGGTCGTGGTGGTGATCGAAGAA
GATCACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGAGGTCCTGGG
TATCATGACAGATCACCACGCAGAGAAGGTCGTGGTGGTGATCGAAGAAG
ATCACTTTCGCCAATGTCAAGATATGAAGAATATCGAAGAGGTCCTGGGT
ATCATGACAGACCTTATGAAAGAGACACGGGATATGGTCGTGCACCGCCT
CCATCAGCCGCCGGTGGTTACAACTACCCACCACGTGATCCATATGCTTA
TCACCCTCCAGCACCTCGTGTTGCTCCAAGACCTGCTATTGATTGTGAAG
TTGTTGCATTGTCGAAGGAAGATAGACCTTATGAAAGAGACACGGGATAT
GGTCGTGCACCGCCTCCATCAGCCGCCGGTGGTTACAACTACCCACCACG
TGATCCATATGCTTATCACCCTCCAGCACCTCGTGTTGCTCCAAGACCTG
CTATTGATTGTGAAGTTGTTGCATTGTCGAAGGAAGATAGTCGCTATGCA
GAAGATGTGGAGAGTCGTTTGCGAAGTATTGGCCTGGTTTGCAATATTGG
TTACCCACCCATCGATTTATCCACAGTTGAAGTTGTCGATCGAATCGCTC
GCTGTGGTACTCTGTACGCCATTGTTCTCAGCTCTCAAAACGCCACCCAT
CAATCGTGCACACTGAATGTTTTACATGGTGCAAGACAAGTCGCTATGCA
GAAGATGTGGAGAGTCGTTTGCGAAGTATTGGCCTGGTTTGCAATATTGG
TTACCCACCCATCGATTTATCCACAGTTGAAGTTGTCGATCGAATCGCTC
GCTGTGGTACTCTGTACGCCATTGTTCTCAGCTCTCAAAACGCCACCCAT
CAATCGTGCACACTGAATGTTTTACATGGTGCAAGACAAGAACACCGTAA
CATGCCGCTCAAAGATGCTCTCTCTTTTGTGGCTAGAAATTTCGACCAAT
ACCTCAAAGACTTGAGTAGGGAGCCTCCTCCCCCTTCTTCTTACTACCCT
TCATCATATAACTACCCACCCCCTCCTCGTGCAGATTACGGTAGAGGGTA
CCCACCAGAACCTGCATACGGAGGCTATGGTGGGCAACATAGCTACCCAC
CTCCTCGGCATACGGAACAACCAGCCTACAGGAGTGAGGAACGGGTAGGT
GGTTATGATGATAGGGGAAGTATAAGTAGTCAGGGGAGCGAAAGGAGCTC
AGAGACCAAAAAACTCTCAGCTGAGGAGCTGAATGAAATGATCGAAAAAT
TGAAACGTGAGAAAGAACAGTTAGAACACCGTAACATGCCGCTCAAAGAT
GCTCTCTCTTTTGTGGCTAGAAATTTCGACCAATACCTCAAAGACTTGAG
TAGGGAGCCTCCTCCCCCTTCTTCTTACTACCCTTCATCATATAACTACC
CACCCCCTCCTCGTGCAGATTACGGTAGAGGGTACCCACCAGAACCTGCA
TACGGAGGCTATGGTGGGCAACATAGCTACCCACCTCCTCGGCATACGGA
ACAACCAGCCTACAGGAGTGAGGAACGGGTAGGTGGTTATGATGATAGGG
GAAGTATAAGTAGTCAGGGGAGCGAAAGGAGCTCAGAGACCAAAAAACTC
TCAGCTGAGGAGCTGAATGAAATGATCGAAAAATTGAAACGTGAGAAAGA
ACAGTTAGAAATTGCTGGCTCCGTTGTAAAACCTGCTACAGAAACACGTG
AAAAGTCAGCAGAACCAGTACCTGCTGCTAATGGCGATCAATAAAAATTG
CTGGCTCCGTTGTAAAACCTGCTACAGAAACACGTGAAAAGTCAGCAGAA
CCAGTACCTGCTGCTAATGGCGATCAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098_pilon | genome | sc0000098_pilon:947364..951280 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1357-1440:3834 |
| Aaloc | 973-1353:3159 |
| Aaloc | 772-969:2693 |
| Aaloc | 607-768:2034 |
| Aaloc | 508-603:1621 |
| Aaloc | 367-504:782 |
| Aaloc | 1-363:1 |
|
