XLOC_005129 (mRNA) -

Overview
NameXLOC_005129
Unique NameXLOC_005129
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000245_pilon:273578..277009+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005129 ID=XLOC_005129|Name=XLOC_005129|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3432bp|location=Sequence derived from alignment at sc0000245_pilon:273578..277009+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtatcaaaaatatttgatcaATATTGGCTCAATACTGCTCTTGATTTT ATCATTCACCTTcgcaaaaaaatatgaagtTACAAGAACTGTAAGTGCTT TAATTATGAATAGCTCTTTGCAGAACTGACTTTTATAGTTGGCGTAATTC TTTTCCTAATgaggtttttttcttctttgatgaCACCACACCATCACTAC ATCACTTGTGAAAGTAGAGgacaaaaggaagaaaatttccctacaaaaat atatttatatagGACAACTTAAGATTAGTCACTATCTTGAAAATTCCTAT aactacaatcagggacaaaatacttggcacaaaagggaaattcaccgggg tgttttgaaaccacaatcgatttgtaagtgctctaaagtaggttcgaagg gtagagttttaactctgagttttaacgctagacttaagacttaggacctt aggatctgaggatccaaaagttcaaaaatgttccaatagggcttgaaata tagcctagaaaccaataaatccctcccagatcgaaatactcgatgaaatc aagttgagggcctgaaattgacattctcgctcgaacttcaattttcgaaa aattgtaaattagccaaaagtgcaaatatattatggcacggattgtagaA TTTTGTTAAAGATAATCTTGAAAGTTCTGTATATTGCCTCACTTGCTTTT ACATTTTTACACCTACCCACCTACCGGAAGACATTAATCCTTTTcacttg ttgtttttttctctttccagATTGAGCAAAAACACTTAAATGTAAAATGC AAGGACAGGACTTACACCATAGCTCACTTCACTGCGACTCGGGAAGGCAA AGGTTATGAGCATGATGTCATCCATTACATTGTATCAGCCAAACACAGAC CTACTGTTATCATCAGGCACGTTTTCAAGGATGTCTCTTTCAAGATTGAT AACATCACTTTTTGTAATCAAACAGGACAAAGTGTCATTTTCTCAGACAA CAAAAATAATCCACAATACTCAGGCCTGGTGATTGCTAACATCTTTCCTT ATAATGATGGTGGTGACATTATCAATCTACCATCACATTCAAGCCACATT GACTACGATAAAAACGCTTTGGATAACATTGAGTGGAAAATTGATGGCCA AAACTTATCTGGTGATACCGTGACTTTTACTGGCACTTCAAATGGAATGA ATGATGATTACAATAAGACTAGTTTACACTTCAAAGTAAGTTAtttcttt taaaggttttgtttttaaataagagtgatatcgtatgcttactcatcaat tttaattcacaagctttttcacattggattgacacacaTGAAGAGCAGga tttaaataaaaacatttttttgcttatgtcagcataatataacaatagga agacactgtcctgatatgaaatatgtgtctgatatgaagcGGGAACActt acataaaaataaaacctttaacgttTAAGGTAGATCCTGGTTACACAAAC CAACCAATTGATAGCGTGATTGTGATTATACTTGGTTAGAGATTAGAGGA AGAATACACGGGCTTTGAATTAGATTTTTGTATAGTTTTTGCTTTGATCT CATGTAATTTAGACGAAAAATTACACGGCAATTGTCTTCCTCTAATCTCT AACCAAGTATAATCACAATCACGCTTTCAATTGGTTTAACCAGGATCTAA cttaaaaaggttttaattttacataagtgttcccgcttcatatcagacac atatggttgttaaaagatgtaaatatggcggagaaaattcaggaaaatct acgaaaacagccaaattcagcatcaatttacgacctttgcagcccatctg aatgtgttacaagtgaagaaggaagatccaaagacacacttgaatgtaaa aagtgcaatcgaatcgtacactacatttgttcaaagctccccgtctatca aatccagttatgtctaacatacaaatcgagagcttttatttgtcaaaatt gTGTTGTGATCACTCCTGATCTATTGGAACGGGTCAATTCATGTGAAACA TCAACAGTTTCAGGATTCTGAAAGGAGATAAAAGCTTGTGAGAACATAAT GAAAGCCCAGGACGTAGAAATCACTCAATTAAAGTCCAAAGACGTTAATA CTATGATCAGCGAAACAAAGGATAGTTTTGAGACCAGAATGGCAACAatc gaaaagaagatggaaaacatcattgaaaagaaagaagaagtaaGACCACG AAGCTACGCAGCAGTCGCGTCGAGGCAAATCGAGAAGAACATAGAAAATG CATTTCGAAGAgaaaaacaggaggaacgaCAGATTCACTCCACGGCATGC AATCCAATTCTTCATGGTGTTGACGAAtccactgaagattcagaggagtc aacCGAAATCTACGACAAATAATATCTTCATGAAAAAGTCTTACCTATGA TGCTACACTTaaggaatataaaaatcgaagaaattcaaagaatcggaaaa ttttcgaaggaaagagaaaatgagaaacgctatcgaccaataaaagttcg atttgcaaacgaagaagacaaaaatacagtgttaaAGGCGATCAACAAAG GAGGATTACCTATAAGATTACCCTTCCGGGTGACAGAAAATCTTACGAAA AAtgaaaggaagacaatcaaagagtggtgtatCAAAGCCCAAGAAATGAA CACTTCAATAAAGGACGcaaacttcaaattcaaagtcagggggagcccta ggaaaaaactctaccttaagaaaattgtaaaccgaacaaagagcggttca tagaggcccatgtgctcgcacggtggcctgcgaacttgtaatagcattat tattatatttcatatcaggacaatgTCTTCCTATTGTTGTATTATGCTGA CattagcaaaaaaatgtttttatcttcctctttctgataAATTGATAGGT TTATTGACTTCggtgaatattttgattttgctttACACCGGGTTCCATTT TAAAAGATGCTTTTTCTTAAGCGGCTAACAGTTGCTACTAGTAGAACACT TTCAAAGTATTGATtgaaatttgagatatttttcacaaattttgaatTGT AAATATACTCACTACATAACTTTGGATTTCAGATTTCTGTTCGAAAGTCG GATGGTTTTGAAGACGAGTTACCTGGCTATCCAAAAGATGCCAACCTCAC TCAATACGATCTCAAAATGAAAGACCTTCCGAAGAATTCCAATTATACAA ACATGAGATACGCTGTAGAAACCGTCATGTTCTCAATAAACAACCAAGAC GTTAAATCATCACCTTTCGAATTGGCCAAAAGCATCGACGATGAACACTC ACCGGGCGTTTTTGAAACATGGGCGGCCACCCTTCAACAAGATCAGCCCG CCCAAATGACGCCATGTCAGAGTTTTATTTCG

Coding sequence (CDS) from alignment at sc0000245_pilon:273578..277009+

>XLOC_005129 ID=XLOC_005129|Name=XLOC_005129|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1710bp|location=Sequence derived from alignment at sc0000245_pilon:273578..277009+ (Clytia hemisphaerica_ch_hm2_pilon)
atgtatcaaaaatatttgatcaATATTGGCTCAATACTGCTCTTGATTTT
ATCATTCACCTTcgcaaaaaaatatgaagtTACAAGAACTatgtatcaaa
aatatttgatcaATATTGGCTCAATACTGCTCTTGATTTTATCATTCACC
TTcgcaaaaaaatatgaagtTACAAGAACTATTGAGCAAAAACACTTAAA
TGTAAAATGCAAGGACAGGACTTACACCATAGCTCACTTCACTGCGACTC
GGGAAGGCAAAGGTTATGAGCATGATGTCATCCATTACATTGTATCAGCC
AAACACAGACCTACTGTTATCATCAGGCACGTTTTCAAGGATGTCTCTTT
CAAGATTGATAACATCACTTTTTGTAATCAAACAGGACAAAGTGTCATTT
TCTCAGACAACAAAAATAATCCACAATACTCAGGCCTGGTGATTGCTAAC
ATCTTTCCTTATAATGATGGTGGTGACATTATCAATCTACCATCACATTC
AAGCCACATTGACTACGATAAAAACGCTTTGGATAACATTGAGTGGAAAA
TTGATGGCCAAAACTTATCTGGTGATACCGTGACTTTTACTGGCACTTCA
AATGGAATGAATGATGATTACAATAAGACTAGTTTACACTTCAAAATTGA
GCAAAAACACTTAAATGTAAAATGCAAGGACAGGACTTACACCATAGCTC
ACTTCACTGCGACTCGGGAAGGCAAAGGTTATGAGCATGATGTCATCCAT
TACATTGTATCAGCCAAACACAGACCTACTGTTATCATCAGGCACGTTTT
CAAGGATGTCTCTTTCAAGATTGATAACATCACTTTTTGTAATCAAACAG
GACAAAGTGTCATTTTCTCAGACAACAAAAATAATCCACAATACTCAGGC
CTGGTGATTGCTAACATCTTTCCTTATAATGATGGTGGTGACATTATCAA
TCTACCATCACATTCAAGCCACATTGACTACGATAAAAACGCTTTGGATA
ACATTGAGTGGAAAATTGATGGCCAAAACTTATCTGGTGATACCGTGACT
TTTACTGGCACTTCAAATGGAATGAATGATGATTACAATAAGACTAGTTT
ACACTTCAAAATTTCTGTTCGAAAGTCGGATGGTTTTGAAGACGAGTTAC
CTGGCTATCCAAAAGATGCCAACCTCACTCAATACGATCTCAAAATGAAA
GACCTTCCGAAGAATTCCAATTATACAAACATGAGATACGCTGTAGAAAC
CGTCATGTTCTCAATAAACAACCAAGACGTTAAATCATCACCTTTCGAAT
TGGCCAAAAGCATCGACGATGAACACTCACCGGGCGTTTTTGAAACATGG
GCGGCCACCCTTCAACAAGATCAGCCCGCCCAAATGACGCCATGTCAGAG
TTTTATTTCGATTTCTGTTCGAAAGTCGGATGGTTTTGAAGACGAGTTAC
CTGGCTATCCAAAAGATGCCAACCTCACTCAATACGATCTCAAAATGAAA
GACCTTCCGAAGAATTCCAATTATACAAACATGAGATACGCTGTAGAAAC
CGTCATGTTCTCAATAAACAACCAAGACGTTAAATCATCACCTTTCGAAT
TGGCCAAAAGCATCGACGATGAACACTCACCGGGCGTTTTTGAAACATGG
GCGGCCACCCTTCAACAAGATCAGCCCGCCCAAATGACGCCATGTCAGAG
TTTTATTTCG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_005129XLOC_005129-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000245_pilongenomesc0000245_pilon:273578..277009 +
Properties
Property NameValue
Aaloc556-855:3133
Aaloc91-555:771
Aaloc1-90:1