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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000245_pilon:345649..351146+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005126 ID=XLOC_005126|Name=XLOC_005126|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5498bp|location=Sequence derived from alignment at sc0000245_pilon:345649..351146+ (Clytia hemisphaerica_ch_hm2_pilon)
TtatattttttggggaaatgtATAGGGTAGGtttttttAAATTGCAGAAA
TAGTaaaaaaaGGTACCTAGAGTCTGTGTCAAAAAGATgtgcagtgtttt
tatttttgaccatgACTTCCCTAGCATTTTTCTTTGTCGCATAATAAAAA
GTATGGTATGTGCGGACGATAATAAGGGTCAGtaggggggggcgtacggg
tttgacggtgtgacggtattagcccttttttctgtcgttgtttcggtgtt
tgaagaaaaaagtgacggtatttcggtgtcaaacatgccatgcggtgaca
aaataaggattttaccaaattttgctgtcggtgttgacggtaatccaaga
aatatgcgtcggtatttcggtgtctgcgacccccgtacgcccccctctCA
GTACATTCCAAACAGAAAACGAGCGCATCCATGAAAAAACATCTGTCAGC
CCTgggtttacagaaaactcaaacccagTCCCTCAGTTCGCTGTTTTATG
ATTCTGACGATAGCGCTCACACGTAAGACGATTATctcacgtccatcagt
aaaatcaaaattgtGATTCAAGTTGCTCTATAGGTAGAAGCTGTAAATGG
TTCAAACTCTCGCTAATCATCAAAGtaaactctcgctaattcagttagac
acttactatttggcccctccactttcaaaattgattcgccggccctgtaa
TTTGAACTCGGACGGGCTGTCcaattagttcgaattaaagacattaaaga
aagatttgaacTAAAGAGAGGATTTTACGAGGGTTTCCCTTTGACGGAGG
AGAGGTTGACTAGCTATAGTGctttcccacaaaccaaattttttctttgt
tttatggttACGGAGGGGCTGACGGGACCTGAAAAATTCTGTTCGAATTG
TAGAAAGATTCCGTAGATTTTGGCTGCATTTCCTCGTCGACTCTTTACCT
AAAAatttccgattttcaaaaattctcttGGGCAACGAAATAGGTATATA
AcaacacatattttttataatttatatcTACAAAATAGATTTAGATCTGT
TACCATGACTACATCCAAAGAAGACAATAATAAACAAGCAATCATCTATT
TATCTTTGAATGAAGAACAACTCTTGGCAGAACAAGTTCAAAAACATCCT
ATCTTGTACAACAAATACACAAAAGGACATTTGAGAGACAAAGatgagtt
gaaaaatgaagcatgGGCGGACGTGGCTGACAATCTTCATTATGTTACAG
ATGGTAAGAAACTACGCAtttattagtgaggttaagggggtagtcatatg
agattttgaaaattggtgaaaatttatcaatttcgggatttagggctttt
taggatcctttatccttcctgaacataccctgaaaatttcaaggccgtag
cATAAATATCTGCCGAAATATTGGGTTTCTTATGAGCCCTGATATACAAT
TTTCTCCCTAGCAACGGGAAATCGCATCCGTTGCTAGGGCCTCATTTCCG
TATGGCTGCTCTAAACATAGCATCATGATATACCaaatgaaagctctttt
tacgccctttttgggcgtctaagtcaataccgccttttttccccgggatt
tcttaatatgacgtaattaaagatggtaaccgaagaagtggtattttcaa
aaacattcacattttggaggcagtcagctgtgtttttgacatggaaactg
agcttatgtattgttttggattgaattatgatattattaaatgtttcatt
tcatttctcacatctgggaaagctttggaagcctatattttgagtgaaag
caacaatttgattctgcgaactgatgttttcgaacagtaaaacttgtaca
tcgaaaaaaaacttttcaaagtgatggactatagactttgaataaagttt
gaagCAAGGAGCCAAAcacattcaatgatgtatccattatgagtcttaaa
tccagtggaaatctagtctttGATGAATCATGGCACTCCATGGCGCCAGA
GGCGATCCTGGCTGGAAAATCGAGTAAAACTATGCATGATTGACGTTCAA
CCTGAAGACACGTTTCCCTaagatcaacactgaaattcaactgtaaacag
atttgagagagcacaaaggatgatatattttgttggcaatatgttttttg
atgagaaaatgcacttttattgacttaaagccatgtttacgcgttgtacg
cagagttgacgcaaaatacttggagattcccggagcacgtggaaggccat
ttttttcaaaaaacttggactattttagtatttccagtaccttttcaaca
ttaaaagttatgtgtcaatccattttggtcaaccacagtaaaaattttgt
aaaacggtctatgtatcgcagaaaaattgagaaaaacctcTATTTTCAAC
TTTGCGTCGTTTTCTCAAAACACGTTTTAGGGGGTTTTCGCGCACCTTGT
CagccttttctcaggattgagaaAAGCTATTGACTTAAAATTTTCAGGGT
AGTTTtccatagaccttttcgcctttgcgtccgccatattgaattgtatg
caaaaattatggtggccgaattgccgtggtgaaatttccttagaaagtat
gcaaaacatatgcaaaaagaaagtattaaataaaaacttacatgcataat
tggcattatattaaagtgtaatcttgtagaagaaagattaaatttgcttc
ttttgaaaactaaaaacaatatATTCACtccatctcttagaacaagcact
tcaaaaaaccataacattagacagaatctcaaactgaaaaatcacccgcg
aaggtaaaaaataatccttattcggctgacggtaaattattctcctggga
atagagccgccaaacgatcaaatcaaaacattgataacccctgagtgtga
cgtcataattactgctgcttcagtttgcgtgttttgaaagtttgatgtgt
gtactccgtcttcgtggaattttttaatggcatgaaaacagaatatgcaa
tgtctttaagaacaaattcctaaaaggcttttgttgttctgtaaatattt
cttttgcttttggattaagaaattccatcttttattgttctaatgattat
aaatttatttataagatgctttgttgtctttttaatctttgtgtaaactt
gcatatgttttgcatatattccaactaaatccaaccacggcttttcgTTC
CTAGtattttgcatacaattcaagatgggggatggaaaggcgaaaaggtc
tatttggcAAGCCCTCATGAAAAGCAGTTTTAACAaaatcattttgactt
taaaaaaaagtacaaagaggttccagaccccctttgaaattttgaaaaaa
ttttccactcattGGAGACCTATTCCCACCTTCACTTTCTAGAAAAAGGT
GACAAATATTTGTATAGCTTGTACCCCCctatattacccccgtctttgct
atttttagaaagggggggAATGAAGTTGTGCTACaATggtggaaagtttc
attgaaaaatatttactacttcacaagatataacaaaaagtttaaaaaat
gacatttcaaatttctcatatgactacccccttaagTATCGATAGATAAA
TTACGACGATGGACGAATTTTCTCTAGCCTTCATTCACGCCACGGCACTT
TTTTACAGGCTGACCGGAAAGCAAGCTAGACTTACCCCCACAATGAAATC
AACTTTGCATCCAGAACGAATTTCCGCTTGATTTTCCGTTCTAGAAGCAA
AGCAGATATAATACACCGGATAAGTCTAGCTTGCTTTTCGATCAGTCTGT
AAAAAAGTGCCGTGGCGTGAATGAAGGCTAGAGAAAATTCGTCCATCGTC
GTGATTTATCTATCGATACTTAATCTCACTATTAACTATTCTTTAACTAC
GAATACCTTGAGGTATTTTTTAGAGATCCCATAAGTCATATAAGTTGGGC
TAAAACGATATCACGCGGGAAGAGTAAGTGTAGGAGTTAGTTAATGGTGG
GAAGAAATTTAATCGGTGGAAGGTCGAAAGCTCATCAGCTCCCTCTCATC
AACCTTttctcgttctcctacgcagctctaCAGCTTTACAAACGACCACC
ACccttatgttcccgccctctgacatgatttaTTATTAATAGATTAGTTT
GGTCTAAGATCCAAAGAGTAGAGACGAACGAGTTTAAAACATAAAGGGCG
GCTATGCagaaatcttcaacctttctcgaGCAATGAAAAGTGAGGCCTTA
AGATTAGCGCCGtcttaaaatgataaatatataACGCTTTCTTCGTTTTC
ACGcagcacatttttcaaaatttagcaatGGATTATTAAACTgacgtttg
tgtaaaaactacgcgtgTCATGTGTTtcgaatgggaaataagtggctgcA
TTTCCTTTAGCACCTtggggctttaaactcgatgTTAAAGACAACTCAAc
caatccttttttatttaACAATCTATattcacatccctgtctcactcACA
TACATCCCTGGATATCACTGGGATTACAATGGTTATTCTTTTGTTTGCTT
TTCCACAGGGTACGAGGGATACCAGTGTAGAGAGGGATTCTGGGTATGGG
CTTTCCGGTGCTACTTCGCTCCCTGACATTTAGAGAGACTCATTTTTGCT
AGAGTTatgtatattttcattttcattgttcaGCTACGCAGGCgcagaaa
ttattttttgtgctAAAGAAGAAGTTTCTACGCAAACGGCGTGAAGTGAA
GGATGCTTACAGAGGCGGATCACAAACAACTATCGCCAAAGCAGAGAAAG
CGTATCGTCAATATGAGTTCCTTCATTGGTTAAGCGAGTATCTTCAAGAG
CGTGAAACCAGGCGATGCAACACAACATCGTTTTCAAATTCATGGTCAAA
CGGAGCTGATAAAAAAGATACAATAAGCGATCATGATGAAGGTAGTTTGT
ATGGCCACGACATGGATGAAATACCAACTATGGTTCCCAAGAGATCCTTG
GCCACACCATCCTCTGAAATCTCCACAAATTCTGTCATGATTGACACTAA
GATAGGAGATTCATTGGATTCGTTTAAATCGTCCACTCAAACATCAACCA
GTCAACAAAAGCATGGTTCAATCTCACCTACCGGTTCTTATAAATATTTC
CAAATGTCTGAAATAAGAGAAGGGACGCAAAGGAGTGTAAAGAATACAGC
ACCTATTGATGCGGTCAAATTTCGGTCACAGGCAGACACAACGCGTCCAG
AGCTGTTAGGAGGTCCCTCTTCAACATCAGGAGCTCCACAAAAAATTCAC
AGTCCTGGCAACAAGCGAAAGTTAGATTCTCCCCAACAAGATAAAGACGA
AATCTTTTGTAAAGGACTTGTACTTGATTTGAAAGAACTTCCACTTTATG
AGCGCTTACATGCTAAACAAGAGATGCGGAATGTTctttttaaatatcaa
attgCCGTCatggaaaaacaacaaaatcaagAGGAAGATCAAAGATAA Coding sequence (CDS) from alignment at sc0000245_pilon:345649..351146+ >XLOC_005126 ID=XLOC_005126|Name=XLOC_005126|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0000245_pilon:345649..351146+ (Clytia hemisphaerica_ch_hm2_pilon)
TtatattttttggggaaatgtATAGGTtatattttttggggaaatgtATA
GGATTTAGATCTGTTACCATGACTACATCCAAAGAAGACAATAATAAACA
AGCAATCATCTATTTATCTTTGAATGAAGAACAACTCTTGGCAGAACAAG
TTCAAAAACATCCTATCTTGTACAACAAATACACAAAAGGACATTTGAGA
GACAAAGatgagttgaaaaatgaagcatgGGCGGACGTGGCTGACAATCT
TCATTATGTTACAGATGATTTAGATCTGTTACCATGACTACATCCAAAGA
AGACAATAATAAACAAGCAATCATCTATTTATCTTTGAATGAAGAACAAC
TCTTGGCAGAACAAGTTCAAAAACATCCTATCTTGTACAACAAATACACA
AAAGGACATTTGAGAGACAAAGatgagttgaaaaatgaagcatgGGCGGA
CGTGGCTGACAATCTTCATTATGTTACAGATGCTACGCAGGCgcagaaat
tattttttgtgctAAAGAAGAAGTTTCTACGCAAACGGCGTGAAGTGAAG
GATGCTTACAGAGGCGGATCACAAACAACTATCGCCAAAGCAGAGAAAGC
GTATCGTCAATATGAGTTCCTTCATTGGTTAAGCGAGTATCTTCAAGAGC
GTGAAACCAGGCGATGCAACACAACATCGTTTTCAAATTCATGGTCAAAC
GGAGCTGATAAAAAAGATACAATAAGCGATCATGATGAAGGTAGTTTGTA
TGGCCACGACATGGATGAAATACCAACTATGGTTCCCAAGAGATCCTTGG
CCACACCATCCTCTGAAATCTCCACAAATTCTGTCATGATTGACACTAAG
ATAGGAGATTCATTGGATTCGTTTAAATCGTCCACTCAAACATCAACCAG
TCAACAAAAGCATGGTTCAATCTCACCTACCGGTTCTTATAAATATTTCC
AAATGTCTGAAATAAGAGAAGGGACGCAAAGGAGTGTAAAGAATACAGCA
CCTATTGATGCGGTCAAATTTCGGTCACAGGCAGACACAACGCGTCCAGA
GCTGTTAGGAGGTCCCTCTTCAACATCAGGAGCTCCACAAAAAATTCACA
GTCCTGGCAACAAGCGAAAGTTAGATTCTCCCCAACAAGATAAAGACGAA
ATCTTTTGTAAAGGACTTGTACTTGATTTGAAAGAACTTCCACTTTATGA
GCGCTTACATGCTAAACAAGAGATGCGGAATGTTctttttaaatatcaaa
ttgCCGTCatggaaaaacaacaaaatcaagAGGAAGATCAAAGATAACTA
CGCAGGCgcagaaattattttttgtgctAAAGAAGAAGTTTCTACGCAAA
CGGCGTGAAGTGAAGGATGCTTACAGAGGCGGATCACAAACAACTATCGC
CAAAGCAGAGAAAGCGTATCGTCAATATGAGTTCCTTCATTGGTTAAGCG
AGTATCTTCAAGAGCGTGAAACCAGGCGATGCAACACAACATCGTTTTCA
AATTCATGGTCAAACGGAGCTGATAAAAAAGATACAATAAGCGATCATGA
TGAAGGTAGTTTGTATGGCCACGACATGGATGAAATACCAACTATGGTTC
CCAAGAGATCCTTGGCCACACCATCCTCTGAAATCTCCACAAATTCTGTC
ATGATTGACACTAAGATAGGAGATTCATTGGATTCGTTTAAATCGTCCAC
TCAAACATCAACCAGTCAACAAAAGCATGGTTCAATCTCACCTACCGGTT
CTTATAAATATTTCCAAATGTCTGAAATAAGAGAAGGGACGCAAAGGAGT
GTAAAGAATACAGCACCTATTGATGCGGTCAAATTTCGGTCACAGGCAGA
CACAACGCGTCCAGAGCTGTTAGGAGGTCCCTCTTCAACATCAGGAGCTC
CACAAAAAATTCACAGTCCTGGCAACAAGCGAAAGTTAGATTCTCCCCAA
CAAGATAAAGACGAAATCTTTTGTAAAGGACTTGTACTTGATTTGAAAGA
ACTTCCACTTTATGAGCGCTTACATGCTAAACAAGAGATGCGGAATGTTc
tttttaaatatcaaattgCCGTCatggaaaaacaacaaaatcaagAGGAA
GATCAAAGATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000245_pilon | genome | sc0000245_pilon:345649..351146 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 244-1056:4686 |
| Aaloc | 28-240:1040 |
| Aaloc | 1-24:1 |
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