XLOC_005092 (mRNA) -

Overview
NameXLOC_005092
Unique NameXLOC_005092
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000404_pilon:214775..223711+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005092 ID=XLOC_005092|Name=XLOC_005092|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8937bp|location=Sequence derived from alignment at sc0000404_pilon:214775..223711+ (Clytia hemisphaerica_ch_hm2_pilon)
ATAAAGAAGATGGCATTGAAATTCATATTTATCGTATTTTGTTTAGTAAT ATGTTATGCATGTTCACAAAAAGGTAACACGACataaatttgctttttaa acTGACTTGCTTGTTTAAGAGTGTTTTACAACACCTGCGGATATGTTGGA TGTTGAATACTTTCATACTCTCTAGGGTATTAATTGCTCCCGAAGGGAGC CTATGTTGTTTCACGAGGCCGTGCTGGGGATCGAGCtggcgaaaaattgt tcaagaaaaaaaacggGACGATGTAACCTAGTGACTGCATCTACTAAAAG ATTGCCGTGTGGTGAGCTTTTAAGCTAGCTCGACCGCGCGAACAgatatt ttgcgtttttggcgctccaaagtcatagcttggaatacaacaacaccgcg tgaacagaaatttagcgtctttagcgctccaaagtcatagcttggaatac aacaacaaaaagcAACGAAGCAACTTGAGTGCAGTTGGTTTCAGGTTTCA GAAAGTAGAAGGTATAATCCCATATACTGTTCTGCAACTTTGTAAGTATa atactattttatcaaaagtaatgtttcagataggaaaagtaatgtttcag ataggatgtatgattgaaaattattctaaagaatttctttttgctttgta tcCTTGTTGTATAATCAGGCATCAGTTAATTTACTGTTACTTTTGGGTAA TTATTatcagaaattggaaaaaactttgcatACCACCATTAACGAAACTC CTGTTTATCTCCAggcaatgtcaattgaattcaattgatccaaattttcg taattgaagaactatcaaattttatcaaacagaatcaAACTATAATAGGT GTTTGGTTACTACTGAACCTGATCGAAGACGACCCTGTCGaaggaaagaa atatttctatccccagACAAACCAATTGCGCTGCCAGATAAGTGAACCAC GCGGCTGGATAAGTGAACGTGTTGTTATGAGTTAACGCACCGTCGACTAA GTTCGAATGAAAGCGGGCAGAATACGGCGGATGGCCATCCATATGGTGAA ATTGACGCCCATGTGTGATCGCCCAATTGTTTAAGTACGTCTCGCAGACC ACGCGTTCAGTCCGGGGAAAGTAATGTTAAAATATTCGGACACGCAACAA GAAAATCCCTGGAGTCggggaatcggcagggtcgttcGAACATTCAACTT TACCAGAATCTTTTAGTTTCgtgactgttcgatttggttgcgGTTGCGGT AATTAACACCTATCGTTTGATATGTTAGATTAGATTGGtacccgtgaaaa agggtaatttgCATCATTTGAGGGAAACTTTACATTGCCTCCAAACTGCA GACCTTTCTTGGTCTGCACTTTGTCTAAgctaaaatgtaaattaaatgtt tttgacttttgaattttttacaattttattaccagaaagctctactttag accttttttcaaagaggccaccttgtagaataattatgtagtccagcaga aaaacaatgataataaccatgcataattattacaatatacatgatacagt aattatgcatggctctatcattgtttttatggctggactacataattatt caacaggacgtcctctttgaaaaaagatctATTTGGAGGCGATACCAGTT TCCCTCCAGTGATTACCCTTTATCACGGTAATCAAACAGTCTGATTGACA TCACCTGgatatttattacaaattatctattggcagtttcttcttctcta ttcctatttcagctttatggttttgccttccagccttcttcattcaccat gacaaataccatattaaccattaaagtagttttacACGTTAGATGTTCTG TCAATTGCtttaaagccagattgacattataTGTTTTTACGAGATCTGAA TCGCTGCTTCAAATACACTGAGTTTGCACAAAGATAGCAGTTGTTCAACC AGTCATCAAACTTCAttttaatataacattttaatgagaagagagttttg acttcaaaagttgaacaagaattggaatgaattgtctgcgtttttaatgg agctgtgCCATGTTTTGTACAATGGGACACCAAAACAGCAACCATTTTAA CCGAACTTCCACagaatcatcttttttgtactgtcCAAGAAACCAGGAAA tctgtttgttgttgaagaggATGTGACGATAGAGAGAAAAAGCTGACCAG AAAGCAGTATGTCCCAAGTTATCTCAAGTAATCCcattttagagcagttg acggtacacaaACTTGACATTAACACTCCTTTAGTTGGAGAAATTCCTGA AGGATATTTCATGTTATGTTCCTGTTGTTTGGttgtattttgaatcattt tggttttggaatgcTTCTGTACCCACTATATTTTTTACGAAACAATATTA CATTACGATATAGACCAAAACTTAgctgaaaattatatcattgtcaaaat atagtcttggaaattataaattcatgttttgatatgttttttatttttat ttttgttgttgttttttcaaagaaaatgcttttgagaagaaagtCATTCT AAATATTTCCTGAAGATTATTCCAAGACCCTgcctataaaacatgaaaag cttTGTAATTTAAGCTTTATAAGGTATCTATTAAAGGGGGGCATGTTTAG TGCAAGCTATGGCTGAGAAAAATACTTTGCAATATCactgtatttctgac aaaaataaacacaacatttcgccttttctgaatttcaatcaatcactgtc aaatgcctgtcatcgggagcatcatagcgaaagctacttgctagtcTAGT CTATTACGCCGACATTAAGTATTTACGCCGTCTATTAAGGCGTagtggtg tagtggttatcgtgcttgacttctgtccaggaggctcgagttcgataccc accgtggcactacgattcacttggcaagtgaatgctccttcgcccgggtc aacccatgccatgtgaggggaattgggtaccataactctgatacaagagt atgggtagatatttcagacattgtggtgtgccgtgacactcaggaggttc tacacctgcgaggacatccgtttctccgtgtagttcgagtgtcgtggtat acatCATGGCTCtgcagctcgcatctgcagggttgcaatgtctgcttgcg ctgtgattcctactccatcgtgggtaggacccattccgatgcatcggagg gcatatctatcaATTACGCCGACATGGTTTCTACATAGTGCAAAGAAAGG CTTAAAGCGAATGGATTACCGTATAACtgaatatttatttaattttttcg attttatgaggggcgtttattcgagggggcgtttaaaagaagagggcgtt tattaaattatttgagtctaacgtcgaatatttagagcaaatctactttt gttttagttttataCCAGGATTTCAGTGCAAATTTCTTTGGGTCGGCGAC TAAAATTGCATCAAAACTGATCTGgttacaaaaaaaactaaaatcttcTT TAATCAAAACTTGTATCAAAGTATACTTGtatcaaaagtttctaataaac gcccctcccctaGAGGGGGCGTTCATttgaagggggcgtttatttgaggg agGCCGTTtgttaaataattttcctttaaggaggggcgtttattccaGGG GGcgttaaaaaaaaggggggTTTATTCGAAGTAGTACGGTATAGGAAGCG AAACAATGAATGGATTATAGGAATCGAAACCTAGGATGACTTTTGACCCT TATTTAGCTTCTTGCTCAACTATCATTGATTTCCATTTTAAGTAGATGAA CTTATTGATATTTAAAATCCTGATCGGAATTGTATCGGGGAATTCCGTTG AACGGGAAATATCGGGAAACTAATTATCACGTGTGAGTGTATTCATATGA TATTGCGCTCTCATGAGTCTTTTGATAGATCGTTGACAGgattttcatta ggtcaaacAAAACTATTGATAAACGATGTGGGTGTTGGGTGCTGATAGCA CGATACTGGCATACTTagcctgataacagctgttcataattttcttacgc gcatggtaaacctctgaaggcgcttgaaaattatacatctgaggaaaata gtcctcccgcgcaaaattttacaacaagaatcttgttgtgcacttgaaag tcaaaaactgatacggcgcccctattcataaacacaatcacgcaactttg ttgtcatccccagtccttttagacgaacgcggtaattacgatttcgagat tgcatattcgtcagattgttatctttttacccatccctttagagcttcag cgtggtgtgcagaaaacaatcacaatctgatctcaggttaggcATACTGG GATTATAAAAATCTAACATCTATTAGGGCTGCAAACTACTTTTAATTACC GTGAAaaagccccgggggggggtactaggtttgcgaggtgacgggtatgt ccgagccgaaaatcgaaaatcgaccctttgagagacaaaattttggtgat tttgggaccctttgagagactttttcctaaattttggtccattttttcca aattttggtttgattttcaccaaattttgctcaaaacttttggaaatcgt gaccctttgagagagaaatttttgattttcgtgattttgggaccctttca gagactaacttttgaatttgtacccctttgagagacttttgaggaatgag aaaaggtacccttatggctcgcacatacccggcacccattttgcctaagt aacccccccggggaaaaagcacaggtcgaaatcatatatcgacgctgtgc cgacgaatcgagattctattcagcacgcaatcaacgaagacaaaagtgac catgacgaccatccaagatcttagatgaagttcaaagttgatatttctat tcccgtcgttgaaaacacaactttttaaaaagagtcagtgatagagaatc ataacataaagtctgtctattatttcgattcaattaaagtgacatttccg taattaatagtttagtaattactgttatacatttggggatcatgtaaaag atttctttcgaaagaaactcacttcaattacacttggaggtttctgggga attcgtaaatagtaaactgcatactgatacagtctgctagacattgataa ggtaatatttgctcttaatctttgattctttctacagtgattagattgac acatgcgcgatagaatttatattattggtcttcagaggttaatatattct ttgaaaacttaacctctgatactcagggtaacttTTAATATATCCAGTTG AATGAGTATGAATATCATTACAAATAGTGgcgcaagtggctctgggtacg tgATTGGGGTGAACTTTTTTAAGTCCTACTAACTTTGAATCTTTGCAGAT CTTTGTGCaaaacttaacttttttttcgatcaaactttcaaaaaccaGCT CTCTTTCccttagacgatcctatcgtctacacattaTCACTAAAAAAGGA ATAATTCAGGAGGCGGGATGAATTTGAAAACGGAGTTTAGTTCGatgcgg agatgtttacagtgtatAGTGTAATGTATGTACaattttgttccaaactc taccgccactatcTTTtaccgtaaaccgccctgacgccctttctctgcgc atatatattttcccgcgtttacttaccctctaaacggacgatagcgtTTA TCTTTCCCTCGAAGTTTTAGGATGCAAGTATTCAGGTTTAAGATACTCTT GATACTATAAAAGTGAAACTACTAATGATTCGTGTCACATTCTTCTGGTA TTTCCAAACTTTCTTAAAAACCCAACAAAAACGACTACttttaaagtgtt tttttgAGCGAGATTCCTTGGCggatggcacacaacgttgtttcaacgtt catctaacgttatatggacgttgtgaacgttagataaacctTGAAACAAC CCCAGCTTGGTTGTCGGTCTATGTTTACGAAGACGTAAATCGCCTACCTG TGGTTCGCTTCTCGGCTTCCTGTGGTTTTTATAATGTCGAGTTGAATTTG TGACCATcgcttttaattatttttctgttTACTGCGCATCTGAAATTTTT ACATAATCAGCGTCTTTCGGTTTTTCGAAAAGAagcaatagcgctccgca acgcatacgtcataattattacttttctctttttttgacatttgtacgag ttgcaatcccacaattcaacaattcaatgcggctcaattaaagatacgtg caagctgttatatatcttttgtcaaacgatgcaattaacgtgcaaaagag attaatgcaaaggttgatgggattggaactcgtacaaacacatcgagagt aatgatcatgtcaaaaataaaatatatttttagattcagcgcggtgcgct attcaAGCGATTCTATCAAAAGGGAAAACTTAGATttaaatcaaagattt tgatgaatacacgtttttatataagaacatagggaGCCTTCGGATAAGTG TTCCGGTTTCATATCAGAGCaattttcaactaaaaataagaaaaagcaCT TAAAAACTTTCGTGCTCTTATTTAGCTCTCTGCTCAACCATCATTGATTT CCATTTTAAGTAGATGAACACATTGATATTTCAGATCCTTATCGGAATCT TATCGGGGAATTCCGTTAAACGGGAAATATCGGGAAACTAATTATCACGT GTGAGTGTATTCAAATTATATTACGCCCTCCTTTGACGGATCGGtgatta gattttcatttaggtCAAATAATACCTTTGATAAACGAAATCCTGAACAG AATTGTATCGGGGAATTCCGTTAAACGGATTACTATCGGGAAACTAATTA TCAGATGTATTTCTCGGAAGCTGAATTTGACAGCTTAGCGGTGTATATTG AATTTACGAGAACTTTATAATGAAATAATGATTTGTTTAGCATTATTTTG ATAGATTGTGTTTTGTTCTGCAGCAACTTTGGGTCCAGTCTCTTTTTTGA TTGACCCTTGCATTGACTGGGTAGAATTATGCAATATTTTTCGCAAGTGA AAATTAGAGCCAAAGCATAAGCAAATAACACCTACATATAAAAACCGTAA TAATATTCGTCCTGGGATCGAGTGGGGTTCtttttttGCATCTTTTTCTG GTATTGGGTTAAATTGCTTTTAAGAATCGAATCTTAAATCTGCCAAACGA CAGGTTTGCTCTCGAATAAACTCACAACAgcgtttttttttgttctttat gTTACAGTTGCTGATAAACCGCGAGGCTCGACAGACAATAACAGTCTTAC TACAACACAAAAacaactcgaaaaattatcgacAACGCTTTCGGTTGCCG GTAAAATCAACACGCTCAACAAAAATGAAGTATCTCCTACGGTACAAACA ACAGACAAGAGACAACAAGATGAAAAAGATCGCGTCCGTTACGAGAAATG GAAGAAACGGCGTCAGTGGCAACGTAATAAGGCTTGGAAACGTGGACAAC GTGAACGACAACGTAAGGAAAGGGAGAAACGGAGAGAACGCCAGcgacac gacgatgatgacgacgacgacgacgaggatggtatatatttttatttttc attctttctcCAACCTATTGAAATAGTGATGAATCTCTTGAATTTGAAAT GAAGCCAATTATTCTTCATTTCacttaaaaattaaagaaaaattcataTT GTAATGATTAGTTCAGTAttttttttACTAGATTGCATTTTGTTCTGGGA ATTTTCTTAAGCTGAACACGAGGATATGCGTGCTCTTCATCttcaattct ttaaaattaaatagCAATATGATTGAGACATGCGGAATAAAATTATAATA CTCCGTCACCACAGGTTGATATTCAAAGAAACTTAAATTGTGGTTTGACT ATCTATCTGCTTTCTTTTACATCCATTGATTCTATGGATGTCACATTCGA TCAAATATTCCAGAGAATAATTTTCTACTtgggaatatatttttttctag aatagTCATTTTTTGTATGTTTAAGATTACAAGATTACTTCTCCTATTAA TTTTAAATACCGTCTACCTTATCTTAGATCACAACAAACCAAACGTTATC TACATCACCTCTACAATAGCTGCCATCTTTATTGTTTGTTTCGTTGCCTT GGTGACCTGGCATTTAAAAGAGACTGATCGATTATGTTTCAAACAAAACG AAAATCAACGCCGAAACACGAACAGCAGTCAAAGAGCATTCGCTAGGAGA TCCAAAATGAATTCTTCGATTGCTAAACCATTTCCTAAACCTTATCCAGG AGAAAAGTTTACTAATGGTGTTTTATCCAAGAATTTCATTAATTCTGTAG TGATTGAAAACATTTCTGTCTCTTACAGCTCACCGTCAAATAAAGAAgct caaaatgaaacaaaacttgAGGAGTTTCAGAAGCAAGATTCTATGCTATC TACTGAAAAATCTACATCTGATGTATTGGAAAAAACGGTTTCTGACACTT TAAGTGAGACGCTGACATCTTTGCAAATTCCTGCCAACAAAAGTAACAGC CCAAGCCAACATTCTTTATCACACCCAGGGTCGTCATATTTACGTCATAG TGACTTCATCATCGGTGACGTAatgaatgacgtcattgttgatATAAAGC AATTGTATCAACAATGTGAACATTCTAAAGATGAAATTTGTTCAACGAAT AAAGGCGCTATTGAAAGTTCAGACAATGCCGTAAATGAGAATTCTGACCT CGTAAACAAAAATTCCATTAAAAGTAGCGTAACAAGAGACTCAGAACTCT CAATCAAAGACTTCATTACCGAGAATAAATGTAATGACGATCTTGAAGAA CATATTAATAATGGagacttaaaaattgaaattgaagtcGCTTCAAATGT TGATGAGAAACAAACAGCGGTTGTAATTACGGCTTAA

Coding sequence (CDS) from alignment at sc0000404_pilon:214775..223711+

>XLOC_005092 ID=XLOC_005092|Name=XLOC_005092|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2514bp|location=Sequence derived from alignment at sc0000404_pilon:214775..223711+ (Clytia hemisphaerica_ch_hm2_pilon)
ATAAAGAAGATGGCATTGAAATTCATATTTATCGTATTTTGTTTAGTAAT
ATGTTATGCATGTTCACAAAAAGATAAAGAAGATGGCATTGAAATTCATA
TTTATCGTATTTTGTTTAGTAATATGTTATGCATGTTCACAAAAAGTTGC
TGATAAACCGCGAGGCTCGACAGACAATAACAGTCTTACTACAACACAAA
AacaactcgaaaaattatcgacAACGCTTTCGGTTGCCGGTAAAATCAAC
ACGCTCAACAAAAATGAAGTATCTCCTACGGTACAAACAACAGACAAGAG
ACAACAAGATGAAAAAGATCGCGTCCGTTACGAGAAATGGAAGAAACGGC
GTCAGTGGCAACGTAATAAGGCTTGGAAACGTGGACAACGTGAACGACAA
CGTAAGGAAAGGGAGAAACGGAGAGAACGCCAGcgacacgacgatgatga
cgacgacgacgacgaggatgTTGCTGATAAACCGCGAGGCTCGACAGACA
ATAACAGTCTTACTACAACACAAAAacaactcgaaaaattatcgacAACG
CTTTCGGTTGCCGGTAAAATCAACACGCTCAACAAAAATGAAGTATCTCC
TACGGTACAAACAACAGACAAGAGACAACAAGATGAAAAAGATCGCGTCC
GTTACGAGAAATGGAAGAAACGGCGTCAGTGGCAACGTAATAAGGCTTGG
AAACGTGGACAACGTGAACGACAACGTAAGGAAAGGGAGAAACGGAGAGA
ACGCCAGcgacacgacgatgatgacgacgacgacgacgaggatgATCACA
ACAAACCAAACGTTATCTACATCACCTCTACAATAGCTGCCATCTTTATT
GTTTGTTTCGTTGCCTTGGTGACCTGGCATTTAAAAGAGACTGATCGATT
ATGTTTCAAACAAAACGAAAATCAACGCCGAAACACGAACAGCAGTCAAA
GAGCATTCGCTAGGAGATCCAAAATGAATTCTTCGATTGCTAAACCATTT
CCTAAACCTTATCCAGGAGAAAAGTTTACTAATGGTGTTTTATCCAAGAA
TTTCATTAATTCTGTAGTGATTGAAAACATTTCTGTCTCTTACAGCTCAC
CGTCAAATAAAGAAgctcaaaatgaaacaaaacttgAGGAGTTTCAGAAG
CAAGATTCTATGCTATCTACTGAAAAATCTACATCTGATGTATTGGAAAA
AACGGTTTCTGACACTTTAAGTGAGACGCTGACATCTTTGCAAATTCCTG
CCAACAAAAGTAACAGCCCAAGCCAACATTCTTTATCACACCCAGGGTCG
TCATATTTACGTCATAGTGACTTCATCATCGGTGACGTAatgaatgacgt
cattgttgatATAAAGCAATTGTATCAACAATGTGAACATTCTAAAGATG
AAATTTGTTCAACGAATAAAGGCGCTATTGAAAGTTCAGACAATGCCGTA
AATGAGAATTCTGACCTCGTAAACAAAAATTCCATTAAAAGTAGCGTAAC
AAGAGACTCAGAACTCTCAATCAAAGACTTCATTACCGAGAATAAATGTA
ATGACGATCTTGAAGAACATATTAATAATGGagacttaaaaattgaaatt
gaagtcGCTTCAAATGTTGATGAGAAACAAACAGCGGTTGTAATTACGGC
TTAAATCACAACAAACCAAACGTTATCTACATCACCTCTACAATAGCTGC
CATCTTTATTGTTTGTTTCGTTGCCTTGGTGACCTGGCATTTAAAAGAGA
CTGATCGATTATGTTTCAAACAAAACGAAAATCAACGCCGAAACACGAAC
AGCAGTCAAAGAGCATTCGCTAGGAGATCCAAAATGAATTCTTCGATTGC
TAAACCATTTCCTAAACCTTATCCAGGAGAAAAGTTTACTAATGGTGTTT
TATCCAAGAATTTCATTAATTCTGTAGTGATTGAAAACATTTCTGTCTCT
TACAGCTCACCGTCAAATAAAGAAgctcaaaatgaaacaaaacttgAGGA
GTTTCAGAAGCAAGATTCTATGCTATCTACTGAAAAATCTACATCTGATG
TATTGGAAAAAACGGTTTCTGACACTTTAAGTGAGACGCTGACATCTTTG
CAAATTCCTGCCAACAAAAGTAACAGCCCAAGCCAACATTCTTTATCACA
CCCAGGGTCGTCATATTTACGTCATAGTGACTTCATCATCGGTGACGTAa
tgaatgacgtcattgttgatATAAAGCAATTGTATCAACAATGTGAACAT
TCTAAAGATGAAATTTGTTCAACGAATAAAGGCGCTATTGAAAGTTCAGA
CAATGCCGTAAATGAGAATTCTGACCTCGTAAACAAAAATTCCATTAAAA
GTAGCGTAACAAGAGACTCAGAACTCTCAATCAAAGACTTCATTACCGAG
AATAAATGTAATGACGATCTTGAAGAACATATTAATAATGGagacttaaa
aattgaaattgaagtcGCTTCAAATGTTGATGAGAAACAAACAGCGGTTG
TAATTACGGCTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_005092XLOC_005092-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000404_pilongenomesc0000404_pilon:214775..223711 +
Properties
Property NameValue
Aaloc400-1257:8080
Aaloc76-396:7260
Aaloc1-72:1