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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000303_pilon:171489..177083+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_005042 ID=XLOC_005042|Name=XLOC_005042|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5595bp|location=Sequence derived from alignment at sc0000303_pilon:171489..177083+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTCCTGAACA
GAACagtgtaaaaatatataaaaaacgggttggaagaaatggttcaggct
ggaaaaagaatgtaagaaaaaattaattctctTAACTCTCCCTTTAAAAT
AAGAAGAATAACaaattttgagtagatttttAGGAGTTTTGGATTAAGAT
GGTAATACAATAATTATCAAGGAACAACTACTTTTCAGTGGAGTCAACTC
CAAACGAAATTTTCTTCCTAAGTCCTGGATGACAGCAAAGTTTCCCTTTT
TAGTTTTAGAGAATCtaacatatatatatattaaaCTCTTCAAATTTGTT
TTACATCCCGGATGGGTTTTTCTATTATTCTTCAGAAAACCAAATACATA
GCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAAAGTCAACACTTT
GTCCAAAAATGTACGTATTTCATGCCAATCTTGAATAGATTTACTGCGAT
TTCGTCACAATATTTGTCAATAATGCCGGCTGACAACTTGATGGCCTCGC
AGGATTTAAATGACTACTGATGactaacatttttgaaaagtataaaaaac
aaaatatacatCATTCTTATTTgattaaatattatttttaaggTCAAGGA
AAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTTCTCCTACACAACGC
ATGACAGGAAAATCACAGCCGAATGTAATTTTTGccttttatttattatt
taacttTCCTGCAAATTACTTATATTTACTGATTCAAATTTCCCGCGAgt
taattttgttttaatttcaaacttatttcacTTACTTTTCAAACAGTTAT
TTCAGTATcacttttaaaattaaaattgtttATTCTAGGCTCAGTCAAAG
GACTTGAAGCTTTTATAAACGATCCAGTCgtaattgaaaaattcaaaaag
gcTGTTTTGGCTATTCAAATCGACGAAGGTCAGTACTTTTGTAAGGGGAG
GGCTTCTTGAAGTTTCAGATTTCTCTCTTTTAAGGTTCGATAAGTTTGTT
AGCACGAAACTGGTACTAAAGCGTTGTGTTTATTTAAAATAATTGAGCAC
ATAAGATTTTTTCAGTTTCTAAATATtgtaaattaataaaaaaacttatt
ttctcTGTTAGACAACCTAAGTGTTGAAGAAGAAGACTGTGAAAAAGAAG
GGGTTGATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAAATGCCATA
AAGAAGAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGTGGTAAATT
TTGTGCAATATGCAAAATGGCCTGAACAACCCCCATTAAATTTCAATCCT
ATATTTATCTTTTCAACCTAGACTATACAAAGGCTGTACACTAacctttt
catttcaaaatattaatttcttttatttgataataaaatatatttatgaA
TCAAAAGGGTATGAAACGGTAAGTTGTTGCCCTCGTGGTCCTCCTAAACT
TAAAGTCTCAAACctatcttttttagaaaatctcttattcctaaaaattg
gaaatatagccttattgttgaaattttcactttcacctACCTGTGTCAAT
AGGTGTCAAAAAGTCACTTctatcaaatttaatttgtcaTCAATGCTTAT
AAATTAGTATTAAAAATTCCTTAAGGTAATGagttcaaagttcaaaattt
gaaaaaaactacccatgaaattcttttttgttatttcgTCTTTTAAATAG
GTTGTTCCTCTAAGCGGATGAAATGGTCTGATGACATTAAACCATCTTGG
TGGCCCTTGGATGTTGATTTCATATCACCTGACACCAAAGACAACAGACC
AACAGTTCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGACcagg
ttgaaaataaaatggtaTATGATTATATCTAATTTAGTTTCCAACATACT
ATATTCTAACATTAAGATATCCTGAAAGTAAATCTATTTGTGTAATTTGT
GTATatgaaacaaaatagaaatttaaCTCTTCTCAAAGGACTTGATGAGT
GAGGAGGATATGCCGAATGCCTCAACAATCGAATCGCTAACTGACTGGAG
TAAGTTACAATTAAAAACATGGCGCATATTGATGGATTGGTTGAGAAATC
GATGGCAGGAGCCAGTCCTCTGCCTTGCTACACAAAAGATTTCTTTAAGG
TAAGAAAGCTCTTGTTAAGGTTTATCGGCAGCTTTGAATCTGCTGATTTC
ATCACAAAATTGAAACTGAACTGAATTGTTTCTGAactgtttaaaaaatt
gttgtttgATCTAGTGGCTTCATaaaactttacttttttttaatttacag
taatatatttctcaggtctatcgacctctatgaaataatcatgcttaaca
ttttacaattttacagttgtaggcgcacggtgggcctcttaaccagtcgt
ctttaaaatttcattttcagtaacagGTTTGTTATAGATCTTCTTAAAGT
AGAGTtttgtccgaggacttcctctaaccttatatatccagttgccatcc
ttttgtaattctgttttctcctttgccttcctatgccactctttgatggt
ttcgcgttctttcttcgaaaaatcgtcggatactctaaattcgtctttct
ctaatttgtggactgatgccagaatatgacgtttctcttcttcgttcttt
agcacgactttcaagggtcgccatctttttgttttgaacatttcgtcctt
ccgagctcctattctttctgcgctgacgatgtttacctttaatcccattt
ggttttgtacaacttcttcaacataatccttatcacctacacgttgttct
tctaggtcttcatctttgttctctccgaggttgtgaacaatgatattgta
ctttgttaagtttaaccatcgttcttcttctttctcttctttgatgaaat
tcttgatctttacctcttgtttctttagctcatctttagtaatgctagcg
tatgtctgttgttgctttgattctatatcgtggtcttttttctttagctc
atctttagcgatgctagcgtatgtctgctgttgtttggatcctttaacga
catcatctttgtttacaagatcgtcgatcttcttctccagtctatccagt
ctagcgaaaacacattgctcatcttgatctttctctttacctccagtatt
tgttgccttgttattggtcgttctttgtttacttgttttgaacttctcta
ataatattggcgtgactgtgatgcatttcgcacattcgaatctccttgct
ttgtactgaaggcaaatctgtacttggtaggctggaagctccgaacaggc
ataatgaacaaatctttgacacttcctacactgcaagacatcgttatccc
gtattatttcatttataaagcattcatttggggtgcaggatccatatttt
gatgaaatttccgtgttaagattttcagaagttttcgccattttgttgca
TTGTCAAGAGCACAACCGCACAGATTTTATTTGAccgataaaaaaataaa
gataaaaaagataaaaaaattcactccattaagaattagtgaataaggag
AAAATAAATGTTCAATTTAATGTAAAGTGCATACACCATGGACTACCATC
AATTGGTCagttaaaagttgaaaatggcTAGTGAACAAGTTGAGCTGGTT
TTATCCACACCGAGTTTATTGCGAAATGTGAACCTCGACAGAAGGAGTTG
CGAATTCAATCAAAGACCTCACTACTGTATCAACAAATGTAACATTCACT
TGAAAAGACTGGAACAATTTCTAATTGGcttcaaaaatgaagtttacaAA
CAAGAAATCAATCTCAAAGAAGAACTAGCCGCAAGCGTGCAGAGCTTCAA
CGAAAGCGACAATGTCAATCATCAGATTCGCCTGGAACCCATTACCAGTG
GTGCGGAATTGGAGGTATTCACTGACgaatctcattcacttttctcGAGT
GAAGAAGGTGACAGATCAATCCTGTCAACGGAAATCAGTATGGACAATGC
GCATTCACAGATACCTCAACAACAAATCGCCATATTACAGAATGTCAAAG
CACTGTTGAACCGTTTAGATGAGCAATGTGTGAAAACTAAAGAACAATTA
CTGAAGGAGCGAGAACGCACTGGCAACCTTCAAGCTCAGATTGATGCGCA
TGCGTACAGGAGAATTCATGCTCTACCAATGGCTGTGCAAAGAGAACATG
AGAAGTGTGCTTATAATATTCAAGAATTGAAATGGCATTGTGCATACGAA
GGTCGAAGAATGTCAAGCGTCAAAGAGAAATATCGTATCGCCCAGAAAAC
CAACGAAAGAATATTGGaggaaatcaattttgtaaaggAAAGCAGCCCTT
TGATATCTGAGAAACAGCGAGAAGAAAAAGAATCGATGAAAGTGATCCAA
CAAAAACAGAACACAGCAGACATCGAACTCAAAGAGGCTAGAAATAACTT
AGATATGATCGAGCGACGTTTCGAACAAACAAAACGCCAAGCGGATCAAG
AAGAGAAATATCTGGCTCAACGATTGCTGGCACTGGCTAATGAGCAGATG
ACAGATTTACTAGAGCAACAATTTTCATACCTTTAAATTTATGCATTGCA
TATTACAGGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGA
GCCCGTCTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAATGTTCG
GAACTGTTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCT
GTCTATTGCTTGAAGAACTTTTCTGAACGTGTGAGTTTTCAAATTCCTTA
TATTTCTGTAAATCACATTCCCTGTATTCCATTTTTCTACCGGATTATTG
ACCGGGACTGCtctgaccgggtcactgatacaggggtgtatttaaacaat
cattcttcatcttttattttatttatttcgtAGTGTATAATGTGGAAAGA
TGATCGGTTAAAGAATGATAAGAAATATTCGATCttttttcgatcgtttt
ttattttaatgatgaTTGACTGTATTTGTTTTATCCAGATGACACAAGGT
AACTCAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATTC
AATGGCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTCATAAAT
TAGGTGAGATAAATTCaaatagaattttcactcaaatgTTATTGGACTAC
TCCTCTCGATGATTTTGTTTCTAAGATAAGATCCCTAATATAAGTGCAAC
GTTTATTTCGTTTCATGACAGAAAAGAAGACGCTTTACTGACGTTAATTC
ATAGAGCCTATTCGAAAATCCGGGTGTTTTGCATTACTTTTAAAAGcatt
tgataaaaatcattaaCGATTAGATCCAAATGAAAATGGACGGGTTATTC
ATTAGCACATTATTTATAACATTGCAggacaagacaagacaagacaagac
aagacaagacaagacaagacaagacaagacaagacaagacaagacaagac
aagacaagacaagacaagacaagacaaaaacataacacgacatga Coding sequence (CDS) from alignment at sc0000303_pilon:171489..177083+ >XLOC_005042 ID=XLOC_005042|Name=XLOC_005042|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2310bp|location=Sequence derived from alignment at sc0000303_pilon:171489..177083+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAAGCTCCTGAACA
GAACagtgtaaaaatatataaaaaacgggttggaagaaatggttcaggct
ggaaaaagaatATGGAAACCAACACCCTCAATGAAACCACGCCCAACCAA
GCTCCTGAACAGAACagtgtaaaaatatataaaaaacgggttggaagaaa
tggttcaggctggaaaaagaatAAAACCAAATACATAGCAGATGCCAATC
TAAGAAGAGCCAAAGAAATCTCGAAAGTCAACACTTTGTCCAAAAATAAA
ACCAAATACATAGCAGATGCCAATCTAAGAAGAGCCAAAGAAATCTCGAA
AGTCAACACTTTGTCCAAAAATgTCAAGGAAAGTGGAGTTTTAACGAAGA
TGCCGTTATGTTTCTTCTCCTACACAACGCATGACAGGAAAATCACAGCC
GAATgTCAAGGAAAGTGGAGTTTTAACGAAGATGCCGTTATGTTTCTTCT
CCTACACAACGCATGACAGGAAAATCACAGCCGAATGCTCAGTCAAAGGA
CTTGAAGCTTTTATAAACGATCCAGTCgtaattgaaaaattcaaaaaggc
TGTTTTGGCTATTCAAATCGACGAAGGCTCAGTCAAAGGACTTGAAGCTT
TTATAAACGATCCAGTCgtaattgaaaaattcaaaaaggcTGTTTTGGCT
ATTCAAATCGACGAAGACAACCTAAGTGTTGAAGAAGAAGACTGTGAAAA
AGAAGGGGTTGATTTCTTCGACTTCCCTTTGAGCTTTCCAAGTCAAAATG
CCATAAAGAAGAGGAAGCTTGTCAACGACTTGGTCAAGTTTGATAGTGAC
AACCTAAGTGTTGAAGAAGAAGACTGTGAAAAAGAAGGGGTTGATTTCTT
CGACTTCCCTTTGAGCTTTCCAAGTCAAAATGCCATAAAGAAGAGGAAGC
TTGTCAACGACTTGGTCAAGTTTGATAGTGGTTGTTCCTCTAAGCGGATG
AAATGGTCTGATGACATTAAACCATCTTGGTGGCCCTTGGATGTTGATTT
CATATCACCTGACACCAAAGACAACAGACCAACAGTTCAAACCCTGGATA
AGATTTTGCATGCATTTCATGATGACcaggttgaaaataaaatgGTTGTT
CCTCTAAGCGGATGAAATGGTCTGATGACATTAAACCATCTTGGTGGCCC
TTGGATGTTGATTTCATATCACCTGACACCAAAGACAACAGACCAACAGT
TCAAACCCTGGATAAGATTTTGCATGCATTTCATGATGACcaggttgaaa
ataaaatgGACTTGATGAGTGAGGAGGATATGCCGAATGCCTCAACAATC
GAATCGCTAACTGACTGGAGTAAGTTACAATTAAAAACATGGCGCATATT
GATGGATTGGTTGAGAAATCGATGGCAGGAGCCAGTCCTCTGCCTTGCTA
CACAAAAGATTTCTTTAAGGACTTGATGAGTGAGGAGGATATGCCGAATG
CCTCAACAATCGAATCGCTAACTGACTGGAGTAAGTTACAATTAAAAACA
TGGCGCATATTGATGGATTGGTTGAGAAATCGATGGCAGGAGCCAGTCCT
CTGCCTTGCTACACAAAAGATTTCTTTAAGGAACAGAAGTATTGTGGCTG
ATAAAGGTTTTTCCGGAAGAGAGCCCGTCTTTCACCCGGATCTTGCAAAG
TGTTTGTCTTGGTTAATGTTCGGAACTGTTGACAGAGAAGAACTTGTTAT
TAGAATCGCTATTATCGCATCTGTCTATTGCTTGAAGAACTTTTCTGAAC
GTGAACAGAAGTATTGTGGCTGATAAAGGTTTTTCCGGAAGAGAGCCCGT
CTTTCACCCGGATCTTGCAAAGTGTTTGTCTTGGTTAATGTTCGGAACTG
TTGACAGAGAAGAACTTGTTATTAGAATCGCTATTATCGCATCTGTCTAT
TGCTTGAAGAACTTTTCTGAACGTATGACACAAGGTAACTCAGATCATAG
TGCGTCACACTATAAAAGATTGTTTAAAAGCGATTCAATGGCGTCACTAC
AGCAGAAGCTCGTTGATGATTCATTGGCTCATAAATTAGATGACACAAGG
TAACTCAGATCATAGTGCGTCACACTATAAAAGATTGTTTAAAAGCGATT
CAATGGCGTCACTACAGCAGAAGCTCGTTGATGATTCATTGGCTCATAAA
TTAGgacaagacaagacaagacaagacaagacaagacaaaaacataacac
gacatgagacaagacaagacaagacaagacaagacaagacaaaaacataa
cacgacatga
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000303_pilon | genome | sc0000303_pilon:171489..177083 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1105-1155:5545 |
| Aaloc | 988-1101:5089 |
| Aaloc | 817-987:4660 |
| Aaloc | 655-813:2039 |
| Aaloc | 493-654:1753 |
| Aaloc | 361-489:1164 |
| Aaloc | 271-357:891 |
| Aaloc | 187-267:643 |
| Aaloc | 112-186:386 |
| Aaloc | 1-111:1 |
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