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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000519_pilon:12545..16167+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_004716 ID=XLOC_004716|Name=XLOC_004716|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3623bp|location=Sequence derived from alignment at sc0000519_pilon:12545..16167+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTACGATTTCAAAATGTCAATGaatgagaaaagacaaaagGTGGA
AGACCTGTTTGATTTTGAAGGTTCTAAAGTTGGTAGAGGAACATATGGTC
ATGTTTATAAAGCAAAAGCAAAGGATCCGTGAGTATGAAATTTCCTTAAA
AGAGAAGATTCAACCCCATAATTTGATAAAAGGCATTGAgcaatgatatt
ttgtaatccttttttttgttcagtatCTTGTCAAAAAGTCAGACTATTAG
TTAAAATCATTCTTTTTGAAAGGGCTCTGCTTTTATTTGTGAGACAATAC
AGGACCCtttttttCATTACAGTaatgatgaaaaagaatatGCTCTGAAA
GAAATTGAAGGAACGGGAATTTCTATGTCTGCTTGTAGAGAAATAGCTGT
AAGTAATGCATGATTTTTTAGATAAAACGATTTTGGCAATCTTTCATTGA
AACAGTTGTAATGGATGTCTTGAATTGtacttttaatttttcgatttcag
cTTTTGCGAGAACTGAATCATGCAAATGTGATCACTCTCAGAAGAGTTTT
CTTATCACATTCTGACAGAAAAGTTTGGTTGTTGATTGACTATTCTGAGC
ACGACCTATGGgtttgtatttttaatgttattGAATGAAAATGACTAGtc
ctgaaattattttttaaaagggCTCCTCTAAAACCATTCTTTAGCTCTTT
TTCGATAAAGATTCAAGACTTTTTATTGACCCCATCAGAGGTCATTGGAA
CAAATTTATCTACCGTTTTATGCTATGCAATTTCTTAATATTCTAAACAA
CTTGACtcctcaaaatttcatattaatATTTCAGCACATAATTAAGTTTC
ACCGCAATGCTAAAGCACACAAGCGACAAGTCAATGTTCAGAAAAGTATG
GTCAAATCTTTGTTGTATCAAATCTTGAATGGTATACACTATTTACACGC
TAATTGGGTTTTGCACAGGGATCTGGTAAGTAAATTCCagctcaattaaa
aaaatccttaaagaatttatctgttttgaaattattaataCTATTCAaca
ttcttcttcttttcttttcttttgttttctcacTACTATGGCTTTGGACA
GTTAACTTTATGCTACCTACATTCATGGTCAAAACATATTGAGCTTTTAG
tgtattttgactttttttagaattttaagttCAGTCGAGAtccgagaatt
gctattttagcactctctttctttcatcgaatatttcgatttctTTAAGA
AACCTGCCAATATTTTGGTAATGGGTGATGGACCTGAACGTGGAACTGTC
AAAATTGGTAAAATACATTTTCTGACTGTTAATTTTCGACTACTTATTCC
ACTGTTTTGCACTTCaaccttcattttttaaatattcacaATGCATGCAA
accagtttttgaaaaattgttggttttttttttgaagcaacTAGTTTTAA
AGGCAGCCAGATGAAATTATATATGATAAATTACACTCAAATAAAGCGAC
TCGCTGCTAATAATCATTTACTTTAATTCACTTGTCATTAATTATTAATG
AAATTGATCTTTTTTCCTTGTGTTGTACAGCTGACATGGGTTTTGCTCGT
TTATTCCACTCACCCCTGAAAGCTCTAGCTGATTTGGATCCAGTTGTTGT
AACATTTTGGTATCGTGCACCAGAACTTCTTCTCGGTGCAAGGCATTATA
CCAAAGCTATAGGTGATTTATGTTGCTATTTTGCTAAAAATAAGATGTAT
AGAATGATTTTAAAACAAGTTTAACAAAGGTATAAAAATCTGTATCGTTT
TTAACCAACCCAAAATTATTTGATGCAGTTTTTTACAAATAATGTAATCT
AGCCAAGCTCAAACTGAtcatgtgaaaaaaaattcaaatggaTCTTAAAA
AGTTCTGGGAACCCATCATGTATTTCTCTTTattatttctctttctcttc
tgAAACCATAATTACCACTTTAAATTCTCCAGATATTTGGGCCATTGGTT
GTATATTTGCAGAGCTGTTAACTTCTGAACCTATTTTCCACTGTCGACAA
GAAGATATCAAAACGTCCACACCATATAATCATGACCAGTTAGATCGTAT
TTTTACTGTCATGGGATTCCCTTCAGGTTATTTGTATTTACTTGCCTTAA
ACTAGCctattttttcatattattttcaCAGGGTTTGGCTAGAAAATTTC
GGGGACTTCCTAGATTGCACCCAGAAATAGCATTTGTATAGTTTTGTTAC
TGGAAAAgtgtttatttttgaattttttttcttgttgacTAAGACCCATC
TAGCTGCTAGAACTTATAGATATTCTGATGGCGGATTGGGTTGTGTCCAG
GCTGTAAAAGAGCTGATTTTGGTTGAACCCACAATTCTCTGAAAACAAGG
GTTAGGGTTCAGGCCTTGCTTTAGCatgtcaaaagaaaatttctaccaGA
TTTctagttgatattgattagcttagagctaagtacacattgtactactt
tgcatcaactttaaagaaaagaaacataaacattacTCTAGAACAGTCCG
TTGaaacttttactttttattttagaaaaagattgGCCAGATATTGTTCG
TATGCCTGAATATCAAACGTTACTGAAAGATTTTCGACGTAATAATTACA
CTGCAAGTTCACTTGCAAAATATATGGATCGtcacaaagtgaaaaatgac
AGCAAAGCTTTTatacttttacaaaaattattaaCTATTGATCCAACAAA
GAGAATTACCTCAGAGGATGCACTTAATGATGAATACTTCAAAGAAGAGC
CGACGCCTACTAAAGATGTTTTTCATGGAATGACAATACCTTACCCAAAA
AGAGAGTTTATTACtgatgatgataatgataatAAATCGAATAAAAATAG
TCAGACAGCAAAAACAAGCACTGGTGGACAAACTTCGAATGCAAACAAGA
GGGCTCGTGTCATGGCACCTGGTCAATCTACGCAAGACTTTCAGGTAATT
TTTAGACCGAACTGGAAGTCcaataaattaaccgttgttcgttcgttcgt
tcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgt
tcgttcgttcgtctgtttccagcttttctcaagattggctcattagtttt
ttctgatttttggcacaatgatgcaaatgatgcccaaaatgtgacggagc
ccgattttcgaaaaaaaaaatttttcggccgaaaatgtaaatattgctgg
aaaaactgtttttttggcattttctcgagatttaacattagttttttctg
attttttgctcaaagatgcgtattaacaatgcccaaaacatggcattTTA
AATTTCTGTTTAAATAAAAGAACCACTGTTAATAAGCTAATCTCATTTTT
TGTTATAGAAACGATATTACcaacacccacagcacgcgcaacacaacatg
cagcaacacaaacaacaacacaacaaacagatgtcacaacagcaacaagg
acaaATGATGGGTCACAGTGGCTCCTCTGCCACTCTGCATTACACTTCCA
ACAATCAGCAGCCGCGATACTGA Coding sequence (CDS) from alignment at sc0000519_pilon:12545..16167+ >XLOC_004716 ID=XLOC_004716|Name=XLOC_004716|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2748bp|location=Sequence derived from alignment at sc0000519_pilon:12545..16167+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATTACGATTTCAAAATGTCAATGaatgagaaaagacaaaagGTGGA
AGACCTGTTTGATTTTGAAGGTTCTAAAGTTGGTAGAGGAACATATGGTC
ATGTTTATAAAGCAAAAGCAAAGGATCCATGGATTACGATTTCAAAATGT
CAATGaatgagaaaagacaaaagGTGGAAGACCTGTTTGATTTTGAAGGT
TCTAAAGTTGGTAGAGGAACATATGGTCATGTTTATAAAGCAAAAGCAAA
GGATCCTaatgatgaaaaagaatatGCTCTGAAAGAAATTGAAGGAACGG
GAATTTCTATGTCTGCTTGTAGAGAAATAGCTTaatgatgaaaaagaata
tGCTCTGAAAGAAATTGAAGGAACGGGAATTTCTATGTCTGCTTGTAGAG
AAATAGCTcTTTTGCGAGAACTGAATCATGCAAATGTGATCACTCTCAGA
AGAGTTTTCTTATCACATTCTGACAGAAAAGTTTGGTTGTTGATTGACTA
TTCTGAGCACGACCTATGGcTTTTGCGAGAACTGAATCATGCAAATGTGA
TCACTCTCAGAAGAGTTTTCTTATCACATTCTGACAGAAAAGTTTGGTTG
TTGATTGACTATTCTGAGCACGACCTATGGCACATAATTAAGTTTCACCG
CAATGCTAAAGCACACAAGCGACAAGTCAATGTTCAGAAAAGTATGGTCA
AATCTTTGTTGTATCAAATCTTGAATGGTATACACTATTTACACGCTAAT
TGGGTTTTGCACAGGGATCTGCACATAATTAAGTTTCACCGCAATGCTAA
AGCACACAAGCGACAAGTCAATGTTCAGAAAAGTATGGTCAAATCTTTGT
TGTATCAAATCTTGAATGGTATACACTATTTACACGCTAATTGGGTTTTG
CACAGGGATCTGAAACCTGCCAATATTTTGGTAATGGGTGATGGACCTGA
ACGTGGAACTGTCAAAATTGAAACCTGCCAATATTTTGGTAATGGGTGAT
GGACCTGAACGTGGAACTGTCAAAATTGCTGACATGGGTTTTGCTCGTTT
ATTCCACTCACCCCTGAAAGCTCTAGCTGATTTGGATCCAGTTGTTGTAA
CATTTTGGTATCGTGCACCAGAACTTCTTCTCGGTGCAAGGCATTATACC
AAAGCTATAGCTGACATGGGTTTTGCTCGTTTATTCCACTCACCCCTGAA
AGCTCTAGCTGATTTGGATCCAGTTGTTGTAACATTTTGGTATCGTGCAC
CAGAACTTCTTCTCGGTGCAAGGCATTATACCAAAGCTATAGATATTTGG
GCCATTGGTTGTATATTTGCAGAGCTGTTAACTTCTGAACCTATTTTCCA
CTGTCGACAAGAAGATATCAAAACGTCCACACCATATAATCATGACCAGT
TAGATCGTATTTTTACTGTCATGGGATTCCCTTCAGATATTTGGGCCATT
GGTTGTATATTTGCAGAGCTGTTAACTTCTGAACCTATTTTCCACTGTCG
ACAAGAAGATATCAAAACGTCCACACCATATAATCATGACCAGTTAGATC
GTATTTTTACTGTCATGGGATTCCCTTCAGaaaaagattgGCCAGATATT
GTTCGTATGCCTGAATATCAAACGTTACTGAAAGATTTTCGACGTAATAA
TTACACTGCAAGTTCACTTGCAAAATATATGGATCGtcacaaagtgaaaa
atgacAGCAAAGCTTTTatacttttacaaaaattattaaCTATTGATCCA
ACAAAGAGAATTACCTCAGAGGATGCACTTAATGATGAATACTTCAAAGA
AGAGCCGACGCCTACTAAAGATGTTTTTCATGGAATGACAATACCTTACC
CAAAAAGAGAGTTTATTACtgatgatgataatgataatAAATCGAATAAA
AATAGTCAGACAGCAAAAACAAGCACTGGTGGACAAACTTCGAATGCAAA
CAAGAGGGCTCGTGTCATGGCACCTGGTCAATCTACGCAAGACTTTCAGa
aaaagattgGCCAGATATTGTTCGTATGCCTGAATATCAAACGTTACTGA
AAGATTTTCGACGTAATAATTACACTGCAAGTTCACTTGCAAAATATATG
GATCGtcacaaagtgaaaaatgacAGCAAAGCTTTTatacttttacaaaa
attattaaCTATTGATCCAACAAAGAGAATTACCTCAGAGGATGCACTTA
ATGATGAATACTTCAAAGAAGAGCCGACGCCTACTAAAGATGTTTTTCAT
GGAATGACAATACCTTACCCAAAAAGAGAGTTTATTACtgatgatgataa
tgataatAAATCGAATAAAAATAGTCAGACAGCAAAAACAAGCACTGGTG
GACAAACTTCGAATGCAAACAAGAGGGCTCGTGTCATGGCACCTGGTCAA
TCTACGCAAGACTTTCAGAAACGATATTACcaacacccacagcacgcgca
acacaacatgcagcaacacaaacaacaacacaacaaacagatgtcacaac
agcaacaaggacaaATGATGGGTCACAGTGGCTCCTCTGCCACTCTGCAT
TACACTTCCAACAATCAGCAGCCGCGATACTGAAAACGATATTACcaaca
cccacagcacgcgcaacacaacatgcagcaacacaaacaacaacacaaca
aacagatgtcacaacagcaacaaggacaaATGATGGGTCACAGTGGCTCC
TCTGCCACTCTGCATTACACTTCCAACAATCAGCAGCCGCGATACTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000519_pilon | genome | sc0000519_pilon:12545..16167 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1294-1380:3537 |
| Aaloc | 1210-1287:3459 |
| Aaloc | 793-1209:2578 |
| Aaloc | 649-789:1985 |
| Aaloc | 517-645:1583 |
| Aaloc | 457-513:1250 |
| Aaloc | 316-456:835 |
| Aaloc | 205-315:501 |
| Aaloc | 130-204:324 |
| Aaloc | 1-126:1 |
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