XLOC_004171 (mRNA) -

Overview
NameXLOC_004171
Unique NameXLOC_004171
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000376_pilon:209929..215195-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004171 ID=XLOC_004171|Name=XLOC_004171|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5267bp|location=Sequence derived from alignment at sc0000376_pilon:209929..215195- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGTTTGGTATAAGTTATCCGGTCTATTTCCTGCAGTTTTAATGCT ATTTATTACAATCACCACCGATTGTGCTCGCCCAGAAAAGAAAGATGTGA TTGTAGGTCTAATAAGTAAATGTATGCAACGACCAATCGGTCAAAGAATT GCGATGGGATTAGTGATGAGTAAAAAGATTGGTATCTTGGCTAGAACAGG ATTTATCGGCAGATACAAGGAGTTTGACGTTTGTGAAGATGAGCGAGATC TTGTAGAGACACTGAATAAACTTTTACTGGAACCAGAATGGATTCTTAAA GACGAGCGATTGAGAATAAAAGGAATCATTGCATTTATACCTGAAAACTT ACTGAAGTTGGCTGTGTCAATATTATCCTACACTGACATAAAGGTAGAGG AGCATTTTCTCTTTAATGCCATTTCATTCTTCTATTTGGGTCGCGTTTTC GACTTGGCAGCGTGGGTTACGGACGTATCCAAACGGTTGATTTTTGGCAT TATTCCTTCTCATCGGAGTGGTTCTTTTTTATGAAAATGCAGACTACTCA TTTATAACCATCGTTGCGTGACGTGTAACTGGACATTTTATCTTTTACGC TGAAGATTGTCACAAAAGTGGCATGAAACTGCCAGTAACAGAATAAACTA GTCATAGCTTTCACTAAATGCCCCCACAGAAAGGTCATGTCATGCAGTTA TAAAGCTTTTAATAAAAATAATCAGGAATAATTGATTGCATGATTTAATT ATTTATTAATTGATTGAAAAAAAATCATATTCCATTAACAAAATACTTGA AGAATTCATGCAGCTTGACAATTTAATGAAATTCAAGGAAAAGCTGGAAA AGCTTCTCAAAAACATATTTCGAAAATCATGGTATCATTATCTTACTGAC TTTCACATCTCCTTGTTTGTTTGTTTTTTCTTACAACAATATATGTCATG ATCATTCACTAAATAGACCTTTTCCGATAATGCTGCAGACATCTTAGATT GTAGGCAAAATATATAGCGGTGCGGTGAATAAATCAACAAGGTAACCAAT CAGAAATAGCTTGTTTATTTTTCATTGGCTGCTATATATTTCAACAACTC TCTATTGCTACTTTGCCTAATAAACAATAGTAAGATGATAAGATGATAAG ATGATACTGCGTATAAAATTTATCAAAAAGTTCTGCGCCATCTGAAATAG ACCAATCCTAGTTAAGGCCCGGGTTCCACTTGCGTACGCTGTGATTGCAG TCAAAAGAAAAATAAAGGAATGTCATTGTGGTCCATTCAGGCGTACAGTC GAAAAGTTGAAATGTGCCTAATTTTTTTTCAAGTGCATAGTACTTTTTCA TGATGCAATCTTTTCTCCAAGCTGAAAGGATTGAAGCCATTAAGATATGA TTGCAGAGCAGACAATGAAGAGACGGGCCTTCAGGAAACTAGACTTTTTG AGTTTTTAGCTATATACTCTCACTTTATGGTGTTCCTGTATGACTGTCTG TGTGCCTACTCTAACCACCGTTAAATACCTTAACTTGGAAAGCTAGAATT GGAGCATTTTCAACAAACCCCCAGAGCGTAAGTTATTTAGGCTATGGGGC CATCCATACACATACAGTACGTACGCAATGAAGGGGGAGAGGGGGGTTTA GCAAAAGCGTACATCTATTGTTTAAATGACATCATTTCTATTGTTCTCTG CGTACAAGGGGGGAGGGGGTATCAAATTTTTGGAAAATCTTTGCGTACGT ACTATTATATGAATGGACTATATGGACGGCCTCTATCACAACTGCATGAA AAAGTGGAACGTGCGCATGCAAAGTTAAACGAATGTAAACAAACTTTTTT CAGGCTTTTGAAATAGATTTACCACACAAACAGTGAAAACACTCTAAGTG AGGTAAATCTATTTTGAAGACCAAAAAAAAAATATTGATATTGACATTCA ACCACTTTTGGATAGACCTTTTTTCAAAAAGGACGTCCTGTTGAATAATT ATGTAGTCCAGCCATAAAAACAATGATAGTGCACTGTATCAAGCAAATTG TAATAATTATGCATGCTTTTATCATTGTTTTTCTGCTGGACTACATAATT ATTCAACAGGGTGGCCTCTTTGAAAAAAGGTCTATTCAACTTTACTCACG TGCACATTCAACTTTTTTGTACTTTGCCGGTATCTTGTTTTACCAAGTTA AGAAGGACTTTCTCGTGTTACGACCATATGATGGTCTTTAAAGCTCAAGA AGCTCTATAAACAATAAAGCTAGTTATTAATATAATAACAGAACAAAAAT ATCAAATGTACATTTGAAAACTTGAGCAAACTTCTTTAAAGATTCCAGAA AAAGAATTGAAATCATTGCTGAAATAAACTTCTGACTAAATTACAGTATT TAGTATTCAGTTTGAAAGACAAGAAACAAAATTTGACATACAAAACACTT TTTCCAGTCAACGAATCAGCTCATCATCATAACCAGTCTGCCATTTTGTT TGTTTTGATTTGCACAAGTAATATTGTAATTCGTGTTATGGTGTAATCAC TATACTTTTTCTATAATTTGCATTTATACACTCGCTTCAGCTTTTCAATG CTAAATCGAAACTAATAAAATGTAATACGCAATAATGGTAATAGCATGTA ACGTAATATGAAAATATGTATAACATTTACCGCTGTATAATTTACCGCCA TATTTTTGCGGAACACTAAATTGGCCGGAAAGCCGATTACGACGCAAACA CAAAAACAAAAACAATTCGCAAAAAATCGAGATTCCAGTCCAATATATTG CGTGAAGCTATGAGTGCCTCCTCAGTCGCTGCGCTCCTTGCGGGGGCAAA AAGTGTCTTTTATTCCTGAGTGATTATTTTTTACGCTATTAATCTTTTAC GAGCCTGGTCCAGAATCACAGGCTCTATGACTCGATGACAAACTGAATTT TCAACTTTCTTTGCTTCTATTTTTTTCAGGTTTTTCCAATGTTTAAATTA TCAGATGACTATCGACGTTGGTCAGACAATTTCATTCATTTCGAACCAAT TGTTGCTATGATACCAGAAGATATTGTTGTTGATATCATCAAAAAATTCG ATTGGAAGCACGTGGCTATTGTTCAAATCAAAAGAAATTCTATCGAAGAC AAGGATAAGTTAAAAATGGATAGGATTCGAAGAGAGTTACCAAACCTTTG TTTTGATTACCAGAACCTAAATACGACGAGTGTAGCTATTGATGATGGCA TCAAAAGAAGGTTATTTGAGACATTGAAAAGAGACCAATCAGTAAAAGCT GTTATCATCAAGGGTATGTAAAATTTAAATCAAGTCACTGCTCTACACAC GTCATGCTATAACTTGACAGTACCGCCAAATCGTCAACCATTATCCTCAT TAGCCACTAGTAATCATCTTAGTAACCCCCTGTATCCATACAGCACCTTC GTTGACCATGTAAACTTTTTATTGATCAACTACTACTCTCATAAACAATC TTTTAACTGCGCGTACCCCGAAAAAAAAACAAAAAAACCATCTAGTACTC TCGGTAACCATCTAGTTCTAAAAATTCTTGACTCAACTTTCCATTTTCTT ACTAGGTGATCTAGCAGCTAAATTCATGTTAGACGCTGACAAATATGGTG TGAAAAAGTACTGGATCCTACTCTCACAATATCGAGAACCAGAAATAGCC CAAAATCACCCAGAATTCATTGGTATCGTCCGATCAATCAAGAATTATCG ATATCAGAAAATCGAGTACCATAACGACACGGTGTGCTCCCAACCAACTA AAATCATGGAGGTTTTCAGACACCAGGCAAAAAGTTGCTCCTCAACGGAA GTTTCTTCACAAAATTCCCGTTATCTTGTAGATGAAATTAAATACGCCTG GAGTATTTTGATACCAAACCGTTTAGTAGTTGTACGAACTATATTAGAAG ATGGTTTTTATAATTATATGGATGTTGTACAATTCTATAATAATAAAGTT CATTCCAAACAACGAGTTAAGAATCTGAAAATTACTCAAAAAGCTATCCA ACTTGGTACTGGTCAATGCCGAGAATGTAAAGAATGCAAGAATCAATGCT TGAAGACAGGACCTCGTGTTGTTGAGCCTGTTAATTATACCAAATCATTC GCTCTCGGGTGTTTGAAATGTAGACAGGGTTTAATATTCGATCCGGAATA TGGGACCTGTACCGAATGCCCTATCCACACTATGGCTAATAAAAATCAAA CTAAATGTTATGACCCTTACATCAAGGAAGATGTATTCTTAGCGTGTTAT ATCGTCAATGGTCTTGGATTACTCTTGTGTCTTTTTACAGCATTTGTCTA TTACAGACATAGAAATACACCTGTTGTTCGTTCAAGTGATTTCACGCTCA CAATCATCCAACTGTTGCTATGTGCCGCCATATTTGTTGCGTTACCAATA GTAACGTTAGCTCCGTTATCTTGGTTTGTTTGCACTGTCAGACCATGTGT TTTTGGGATCCTCCTGGTAGCGATCGTATCCATTGTGGTATGCAAAGCGG AGAAAATTTTGATCATATTTTATACGCGTCGGCGCTTAACACCAAAAGAT ATCAAAGATCTTTATATTCGTCAGCTATGTATCTTTTTATTCTTGCTCAT AATCGATATGATCATTTTACCGACAACTTTCCGACTACCATCGTCGGTTA AAACTCGCAAATTCCCGACTACGAGTGACGATACGTACTTGATACGATAT TGTAGTACCGATGATCGCTTCGATGTACAAATCGTGTATTGTATCGTGCT TTTATTATTAGCGATCGCGCAAGGATATCGCGGTCGAAAACTGCCAAGTA ATTATAATGAAGGCAACTCAATCATCGTAAGTGCGTCATCCACGATTTGC GCTTTCATTTTCAAAATCTGGATAACAAACACACCACGACACCGATTCGA AAGAACATCTACAGTATGGTTATCTTTGAGTGTCAGTGTTCTATTATTAA TTTTTACCTCTTTACGGACCAAAGGTATACATTATTTTACTTTTACCGCA TAAAAACACTAAGAAACATATTATGAATCGAATGTTATCTGACAGTTCTA TGAAAAGATCTGAAGTAGCGTTTTCTTTTCGTAAACGACAAAGCAAGAAA CAATTACTGGATCCTTCTGATATCAGATTTCTCCCTAAAAACAATAATGA TGACGGGGGTAGTGATGTTGATGGTAATGAGGATGAAATGATTGAGATGA ACGACCTGTCAACGTGA

Coding sequence (CDS) from alignment at sc0000376_pilon:209929..215195-

>XLOC_004171 ID=XLOC_004171|Name=XLOC_004171|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4778bp|location=Sequence derived from alignment at sc0000376_pilon:209929..215195- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTTGTTTGGTATAAGTTATCCGGTCTATTTCCTGCAGTTTTAATGCT
ATTTATTACAATCACCACCGATTGTGCTCGCCCAGAAAAGAAAGATGTGA
TTGTAGGTCTAATAAGTAAATGTATGCAACGACCAATCGGTCAAAGAATT
GCGATGGGATTAGTGATGAGTAAAAAGATTGGTATCTTGGCTAGAACAGG
ATTTATCGGCAGATACAAGGAGTTTGACGTTTGTGAAGATGAGCGAGATC
TTGTAGAGACACTGAATAAACTTTTACTGGAACCAGAATGGATTCTTAAA
GACGAGCGATTGAGAATAAAAGGAATCATTGCATTTATACCTGAAAACTT
ACTGAAGTTGGCTGTGTCAATATTATCCTACACTGACATAAAGATGTTTG
TTTGGTATAAGTTATCCGGTCTATTTCCTGCAGTTTTAATGCTATTTATT
ACAATCACCACCGATTGTGCTCGCCCAGAAAAGAAAGATGTGATTGTAGG
TCTAATAAGTAAATGTATGCAACGACCAATCGGTCAAAGAATTGCGATGG
GATTAGTGATGAGTAAAAAGATTGGTATCTTGGCTAGAACAGGATTTATC
GGCAGATACAAGGAGTTTGACGTTTGTGAAGATGAGCGAGATCTTGTAGA
GACACTGAATAAACTTTTACTGGAACCAGAATGGATTCTTAAAGACGAGC
GATTGAGAATAAAAGGAATCATTGCATTTATACCTGAAAACTTACTGAAG
TTGGCTGTGTCAATATTATCCTACACTGACATAAAGGTTTTTCCAATGTT
TAAATTATCAGATGACTATCGACGTTGGTCAGACAATTTCATTCATTTCG
AACCAATTGTTGCTATGATACCAGAAGATATTGTTGTTGATATCATCAAA
AAATTCGATTGGAAGCACGTGGCTATTGTTCAAATCAAAAGAAATTCTAT
CGAAGACAAGGATAAGTTAAAAATGGATAGGATTCGAAGAGAGTTACCAA
ACCTTTGTTTTGATTACCAGAACCTAAATACGACGAGTGTAGCTATTGAT
GATGGCATCAAAAGAAGGTTATTTGAGACATTGAAAAGAGACCAATCAGT
AAAAGCTGTTATCATCAAGGGTTTTTCCAATGTTTAAATTATCAGATGAC
TATCGACGTTGGTCAGACAATTTCATTCATTTCGAACCAATTGTTGCTAT
GATACCAGAAGATATTGTTGTTGATATCATCAAAAAATTCGATTGGAAGC
ACGTGGCTATTGTTCAAATCAAAAGAAATTCTATCGAAGACAAGGATAAG
TTAAAAATGGATAGGATTCGAAGAGAGTTACCAAACCTTTGTTTTGATTA
CCAGAACCTAAATACGACGAGTGTAGCTATTGATGATGGCATCAAAAGAA
GGTTATTTGAGACATTGAAAAGAGACCAATCAGTAAAAGCTGTTATCATC
AAGGGTGATCTAGCAGCTAAATTCATGTTAGACGCTGACAAATATGGTGT
GAAAAAGTACTGGATCCTACTCTCACAATATCGAGAACCAGAAATAGCCC
AAAATCACCCAGAATTCATTGGTATCGTCCGATCAATCAAGAATTATCGA
TATCAGAAAATCGAGTACCATAACGACACGGTGTGCTCCCAACCAACTAA
AATCATGGAGGTTTTCAGACACCAGGCAAAAAGTTGCTCCTCAACGGAAG
TTTCTTCACAAAATTCCCGTTATCTTGTAGATGAAATTAAATACGCCTGG
AGTATTTTGATACCAAACCGTTTAGTAGTTGTACGAACTATATTAGAAGA
TGGTTTTTATAATTATATGGATGTTGTACAATTCTATAATAATAAAGTTC
ATTCCAAACAACGAGTTAAGAATCTGAAAATTACTCAAAAAGCTATCCAA
CTTGGTACTGGTCAATGCCGAGAATGTAAAGAATGCAAGAATCAATGCTT
GAAGACAGGACCTCGTGTTGTTGAGCCTGTTAATTATACCAAATCATTCG
CTCTCGGGTGTTTGAAATGTAGACAGGGTTTAATATTCGATCCGGAATAT
GGGACCTGTACCGAATGCCCTATCCACACTATGGCTAATAAAAATCAAAC
TAAATGTTATGACCCTTACATCAAGGAAGATGTATTCTTAGCGTGTTATA
TCGTCAATGGTCTTGGATTACTCTTGTGTCTTTTTACAGCATTTGTCTAT
TACAGACATAGAAATACACCTGTTGTTCGTTCAAGTGATTTCACGCTCAC
AATCATCCAACTGTTGCTATGTGCCGCCATATTTGTTGCGTTACCAATAG
TAACGTTAGCTCCGTTATCTTGGTTTGTTTGCACTGTCAGACCATGTGTT
TTTGGGATCCTCCTGGTAGCGATCGTATCCATTGTGGTATGCAAAGCGGA
GAAAATTTTGATCATATTTTATACGCGTCGGCGCTTAACACCAAAAGATA
TCAAAGATCTTTATATTCGTCAGCTATGTATCTTTTTATTCTTGCTCATA
ATCGATATGATCATTTTACCGACAACTTTCCGACTACCATCGTCGGTTAA
AACTCGCAAATTCCCGACTACGAGTGACGATACGTACTTGATACGATATT
GTAGTACCGATGATCGCTTCGATGTACAAATCGTGTATTGTATCGTGCTT
TTATTATTAGCGATCGCGCAAGGATATCGCGGTCGAAAACTGCCAAGTAA
TTATAATGAAGGCAACTCAATCATCGTAAGTGCGTCATCCACGATTTGCG
CTTTCATTTTCAAAATCTGGATAACAAACACACCACGACACCGATTCGAA
AGAACATCTACAGTATGGTTATCTTTGAGTGTCAGTGTTCTATTATTAAT
TTTTACCTCTTTACGGACCAAAGGTATACATTATTTTACTTTTACCGCAT
AAAAACACTAAGAAACATATTATGAATCGAATGTTATCTGACAGTTCTAT
GAAAAGATCTGAAGTAGCGTTTTCTTTTCGTAAACGACAAAGCAAGAAAC
AATTACTGGATCCTTCTGATATCAGATTTCTCCCTAAAAACAATAATGAT
GACGGGGGTAGTGATGTTGATGGTAATGAGGATGAAATGATTGAGATGAA
CGACCTGTCAACGTGAGTGATCTAGCAGCTAAATTCATGTTAGACGCTGA
CAAATATGGTGTGAAAAAGTACTGGATCCTACTCTCACAATATCGAGAAC
CAGAAATAGCCCAAAATCACCCAGAATTCATTGGTATCGTCCGATCAATC
AAGAATTATCGATATCAGAAAATCGAGTACCATAACGACACGGTGTGCTC
CCAACCAACTAAAATCATGGAGGTTTTCAGACACCAGGCAAAAAGTTGCT
CCTCAACGGAAGTTTCTTCACAAAATTCCCGTTATCTTGTAGATGAAATT
AAATACGCCTGGAGTATTTTGATACCAAACCGTTTAGTAGTTGTACGAAC
TATATTAGAAGATGGTTTTTATAATTATATGGATGTTGTACAATTCTATA
ATAATAAAGTTCATTCCAAACAACGAGTTAAGAATCTGAAAATTACTCAA
AAAGCTATCCAACTTGGTACTGGTCAATGCCGAGAATGTAAAGAATGCAA
GAATCAATGCTTGAAGACAGGACCTCGTGTTGTTGAGCCTGTTAATTATA
CCAAATCATTCGCTCTCGGGTGTTTGAAATGTAGACAGGGTTTAATATTC
GATCCGGAATATGGGACCTGTACCGAATGCCCTATCCACACTATGGCTAA
TAAAAATCAAACTAAATGTTATGACCCTTACATCAAGGAAGATGTATTCT
TAGCGTGTTATATCGTCAATGGTCTTGGATTACTCTTGTGTCTTTTTACA
GCATTTGTCTATTACAGACATAGAAATACACCTGTTGTTCGTTCAAGTGA
TTTCACGCTCACAATCATCCAACTGTTGCTATGTGCCGCCATATTTGTTG
CGTTACCAATAGTAACGTTAGCTCCGTTATCTTGGTTTGTTTGCACTGTC
AGACCATGTGTTTTTGGGATCCTCCTGGTAGCGATCGTATCCATTGTGGT
ATGCAAAGCGGAGAAAATTTTGATCATATTTTATACGCGTCGGCGCTTAA
CACCAAAAGATATCAAAGATCTTTATATTCGTCAGCTATGTATCTTTTTA
TTCTTGCTCATAATCGATATGATCATTTTACCGACAACTTTCCGACTACC
ATCGTCGGTTAAAACTCGCAAATTCCCGACTACGAGTGACGATACGTACT
TGATACGATATTGTAGTACCGATGATCGCTTCGATGTACAAATCGTGTAT
TGTATCGTGCTTTTATTATTAGCGATCGCGCAAGGATATCGCGGTCGAAA
ACTGCCAAGTAATTATAATGAAGGCAACTCAATCATCGTAAGTGCGTCAT
CCACGATTTGCGCTTTCATTTTCAAAATCTGGATAACAAACACACCACGA
CACCGATTCGAAAGAACATCTACAGTATGGTTATCTTTGAGTGTCAGTGT
TCTATTATTAATTTTTACCTCTTTACGGACCAAAGGTATACATTATTTTA
CTTTTACCGCATAAAAACACTAAGAAACATATTATGAATCGAATGTTATC
TGACAGTTCTATGAAAAGATCTGAAGTAGCGTTTTCTTTTCGTAAACGAC
AAAGCAAGAAACAATTACTGGATCCTTCTGATATCAGATTTCTCCCTAAA
AACAATAATGATGACGGGGGTAGTGATGTTGATGGTAATGAGGATGAAAT
GATTGAGATGAACGACCTGTCAACGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_004171XLOC_004171-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376_pilongenomesc0000376_pilon:209929..215195 -
Properties
Property NameValue
Aaloc2125-2388:265
Aaloc730-2124:1661
Aaloc394-726:2289
Aaloc1-393:5268