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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000300_pilon:300087..306872+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_003887 ID=XLOC_003887|Name=XLOC_003887|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6786bp|location=Sequence derived from alignment at sc0000300_pilon:300087..306872+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGCTCTCAAATTATCGGTATACTTCATATTGATGGTCTTGTCACT
ACATGGAGTTATTGGCCAAAATGACTGTCCGATAAAGAAATTGGAAGGGT
TGTATGGAACATTAAATGGTGGAGAACAATTCAAATGTGATATGGAAACC
TATGAAATTACGGTAATTTCTATTTTCTTGCATTTGTCATACAACTGTCT
ATCAACATTCCAATCATATTATATCAGTAGGTTCGCCTTGCAAATCCTGC
attaataacacgcatgcgtaattgcctttcttttaaaccacatgtagtta
attcccgtggggtggtacagtcactttcggtcggggtcgTGGAGGGAAac
atttgtcgttcttttttgtcattctttatgaaatttgtcgttttgtctat
ttttagtaatgcaggatttgttaCATAGACCCCCTCGTATGCATACCCTG
CGATCGTATCAAGGGGACTGATTTTTTACATTAGGGTTGAACATCTGTAT
CTTACATatttatatttcatatttaGTTTGAGAGAAACACAGCATTTGGA
AAAGCTTTAGAACCACTAGAATCAGCTGTCGTCTTGGAATGGCGTATATT
TCATGTTCCCGCAAATTTACCAGAGTGTGCCGCTGGTGCTGTAAGAGTTT
ATAAAGGGTACGAAATTtaattcttattttcttttttaaaattttaccac
TTATTGGGGCATAAAAGTACTGGctaaatttgtaaacaaaccgtatgcag
cgggatacaaaatcaaaacaaatgtcacatcttggactaaaaaaacaaat
atggctgattttgattgttttacaagtttgttttggacacgtgattttat
tcgTTCGTTcgcgtggttcgcgcaatgtttacattttactacttttatgt
ccctttaacacTTTCACTGCCGAACGCCCTTTTtataaaatcgaaaattt
gagCTCTTGGAAATTTATCGAAAGTTTTAGAGGACTTTCAGAGGCTCCTG
TTGCCCAAGTTTTGCTTCAAATGCCCtccaaaatggaaacaaatcGACGC
AGAATTTCATCTAAATTCCAAAATTGCAATAAAATAGCATAGAAAAGTTT
CTGTATTCAAAGTTATGGCCCTTTGAAGTACTACCGGTATTTTGAATGTg
ttaagggagtggtcagaaagtatctactagggtggattgaataatatttt
caaagattctAAAAAGAATTCATTTCAATTCCCGAATTTTATCTTTGAAT
CCCGAATTTCTATCTTTTCTTTAATTCCAGGTGTAAGAACAAGGTGGAGA
TCGCAGAATTTTGTTCGGGAAACATGATTTCAGAGCTTCCACATAATATA
TATGCATACACTGATTGTCTGACTGTTGAACTTGATCGTATGAATGCCAA
ACAGAAAGGTAGTTTCATAGCCAGGTGGTACCAACTAACCGATAAACAGG
CTGCACCAGTACCTGGCTGCTCAGGGTAGGTGCATCGAGTTTTATTTGCT
TCCCTAAGCGGCCggactccactttcgcgcgaaatgggcgacagtttttt
cctaaccttttttgcctgaagaaaagattacgtcataaaaagtttcgcgc
gaacaaaaaaaaagttgaaggaagttctactttttcatccgttacgtcaa
tttctaccaatggaattgcttcatttttcaaccgacgtcaaaaagttttc
gctcatgtcgcgcgaaagtggagaccggccttaagcgGCCGTAGGATAAA
AATAGAGCATCCCCAATCCCCCAACAAATATATTGAGACAGAAgaatttc
taaacatttttgcaaGATAAAAATCCGTCCCCCGGACCCCAATATCAGTG
TTGAGTCCGGAAATGGCCGAGAACTCAACGCTGACAGTGGGGGAAAGGGG
GACTATGTGAAATGTCTCAGATATAAATTAGGGGATTGCagctacggtgt
gcaaggttgtGGATTCAATGCCCAGCCGGGACATACCAAAGAGACTtcaa
tggtacttgatgcctctctgcttgatgcttagAAATTTTAGAGCAGGAtc
aaatgggccattccattttatatccattagacgaacatttccagagggtc
ttccgaaaaaaattccaggggtgtttttttcatttttctaagggGATAAt
gagttattctaaaatttccaggggccaaaagactaattttagttcgtcca
tccTCGCTTTAaggtttaaaaatattctttccaagggaatttttgcaaat
tttgccattttccagggggatccacatattttcaataatttctttttgac
ttgaaaaggttcatcCACCCTTCCCGTATGGTTTAAATGGAACAGCCTAA
TGTAAGTGGAGAAAGCCAGGAAAagggaaaaagaaaaggaaaccTTCGGG
TCACCCTCTTGTCTTATGACAAGACCAGTTCTATTATGTGAGAACAAATT
ACTCTTATTATTGAGAAAAAGCTGTTACTTATTATCGAGAGTTCTTATTA
TTATAATAGAACTATAAAAGAAGCGCGTGGAATCGCAGGAACACTAAAAT
GGCCCAAAACAACAACCACTGATTGTGAGTTTCAACTTGAAAGTGAGGCT
ACAAATGGTTACGTCATTCATATTATGGACATTGCAGAAGGAGGAACAAC
TTGTGAAAGTTTGGATCAAAGAATCAAAGTAAAAGGTATTCTAAGATTTT
ATAAAACACGTGGTATAAACAAATTAAGCACTCTCGACCCCAGGCCTTAC
CTGACCCCCTTACTCTATTAATGATTCTCATGGATCAGCTCAAATCTCGG
ATTTCAGGAGTTTGACCATTAGATATCAATCTGCcagtagcaaaataaaa
aagtgtcttttcttcttGACTGatattaatttttaaagttttcaagCCCC
TTTTAAATGTTTGAGCATAATTTGAATATAATTAAAGGGCTCTTGAACAC
AGAAAAGGCTTGTGTTCTCCCAACCTTGTACGTCTTCATATAATCAtatg
atttataaattttttgttcgttGAAAATCGATTCTAAAGTAATCTTATCT
TGTATCTTCCGATTTCATAAACCAATACAATGGGTGAGAATTCACCTGAG
GAAAATCTCCCGTTTGGGAATTCGCTAGGGGTTACCCTCTCTACCAGTTG
GGATTCACTCGGTAGGAATTCACCGGGGCAGGGGAATGCCAATCATATGA
TGTTAGTCTCCTGGATCATTACTTTAAGTGTCAGTCTAGGTAACATACAA
ACCAAATTCATCGTTGAAAGTAAACTCAGCCACAAcaaaaatctcgaaat
tttaaataaaatggtGCCTTACTCTTTCTTGTTTTAGATGCGGACGAATT
TTCAAAAGGGAAGTATCTTTGTTCACCAAAAAGAGTTGATACACGTTATT
TCAAACCGAATATCGAAATGAAATACATTCAAGGAGCCGATTTGAACTGG
AATAAACGAGGTTTCGTGATGGGTTGGGTTTCTTTTAAAGACCCATACCA
TGGTAAGTTTTGTTAACCGTTtcggggaaatcggggaaacgcGCATCGGT
TTCGATATGGTTTGGGTTTCTTTTAAAGACCCATATCATGGTAAGttttt
ttAATCGTTtcggggaaatcggggaaacgcGCATCGGTTTCGATATGGGT
TGGGTTTCTTTTAAAGACCCATATCATGGTAAGTGTTGTTAACCGTTTtg
ggaaaatcggggaaacgcGCATCGGTTTCGATATGGGTTGGGTTTCTTTT
AAAGACCCATATCATAGTAAGAGTTGTTAACCGTTtcggggaaatcgggg
aaacgcGCATCAATTTCGATATGGGTTGGGTTTCTTTTAAAGACTCATAC
CATGGTAAGTGTTGTTAACCGTTTtgggaaaatcggggaaacgcGCATCG
GTTTCGATATGGGTTGGGTTTCTTTTAAAGACTCATACCATGGTAAGTGT
TGTTAACCGTTtcggggaaatcggggaaacgcGCATCAGTTTCGATATGG
GTTGGGTTTCTTTACCCATATCATAAGAATGATCgggaaaatattgagaa
aatctTCAGCTTTGAGCTCACAAAATATTGTGAGGCATAAAGGAACTGAA
ATTTGCAAAATATATCAGAGGTTTAATTACGTTTAACTTTAATTAGTCGA
TTTTAAAATTCGAAATATTCTTCTAATAAACCTTTCCTTCGCTTTCTGTT
TATTCTAGAGGAACCATCGTCAGGGGTGTCGGGTGGTGTGATTGCAGCCG
CCATCATAATTCCATTGGTTCTGCTCATCTTAGTTGTGTTTCTGGTCATT
TTCATTCTCAAAAGAAGGCGTGGCTTCGTTTTCCACAACCAAGGTACAGA
CAAATATCCATTTTGACGTTGGTCTTACATataataatgaaatttttacc
AACGATGCCTGtcctacacaatagacagaacACGGTCTTTCTGTtttatg
accccccccccagtggtagctctgatcacgatatcacgcaattgtTTGTC
TCTTTTgtcacgcaaatcagcaaaacaGGACAAATACGCATCTCTTTTAA
AAAGTCGAAATCACGTATcgcggctcaaaaatctttcaaatcacgatcac
gttttgacctctcatcacgaaatcatgaagaaaaaatttccaaatcacgt
aatcacgttGCGAAAAAGTCCTTATCACGTCATAACGAAAACCGCTTGGG
AGCCTCTTTTATGGATTCCAATTTGCGAGTAAAAATTACTTAAAATGACT
ATAACTTGCTTTAACCTCTATCAGATAGTGACAACAGTGTCCGCAGTGTT
TAAAAATTAGTTCAAAGTTTTAAGAATCTTGTTCAAAGCTCCATTGGATG
GACACAAGAATTTCTATGGCcactgttgtttttttcatcttaGGACCAAG
ATTTAAACCGGCTGCAACACAACCCCCATCTGGTGATCCAGAAGCTGTTG
CTTATAATCCACAAAATGGTGAGTCTcatttctcatttttatttgaaaat
cgatCCGTTATAAAGTCTTGCATGTTAGAAGACTAACtcaatccccgcga
aagtttatcctattaataattgttacgggatgaTAATTTCAGTTTGATTT
TGTCCCTTCCATTATTTTTGGCCTATATTTTAACATGTCTGAGATTTCCC
AGctgcacacaacgttgtttcaacggcCATCttatgttcacaacgtccat
ataacgctagataaacgttaaaacaacgttgtgtgccatgcTGGGAAGTC
TAACTAAGTTTATGTCGGATGGTAGGCTGCACTCAAACCCTCTGATAAct
ttttgatataggggatacGTATCATATATGAAATTTCTGTCCGAGAGCTA
CCCCAAAGGGTCTGTTTCAATCTATAGCCACTTAAtaacttttcctttgt
ttttcgAGTATAGGCACAAATGAACTCCGCCTGGTCGGTAAAATATACcc
ctcaaaaacacaaagacgggcATAACTCTAGGAAAGGAATTTCAAAATAC
ATGATACGCATCTCTTATATCAAGATTAATTGCAGCCTAGTCGGACACAT
CAAATTTTGTAGGAAAGGTTGCATTAAAGCGAAGCTTGTTCCTCAATATt
gtaataaaaatgtaaaagtgtaagaaagaaaaatacacacatcaaaattt
ggtaaaaacagATTATTTTGAATCAGCTAGCCTCAAAAAATATTATCGCG
AGATTTTTTCTCGGTGTGGGATCGTGGACACACTCACTTTATGAGTTTGT
GTGGTATTGatccatattttcaagattaattttcaaatttatttttattt
ctaacaTTCATAGAGCAATGACCGGTTAGCGAGTGCTGTTCTGGGAAATA
TTGCCCGTGAGAAGTCGTTGCTTTGTTTGAGGGCAACATTTcacagtaca
gcccgaaaaaaccggtcattgTTGTATTTATTAACCGTTTCCTTCGGCTT
CGACtgattttttgagctttttccaagaaaaatagcaaaaaaaacaagcg
aaaagagatcaaaaattgttttaatttctgacgtcgaaaatgaaaaatgt
gacAACTGATGCCAACGcagtgttcattttcctttgaaaaaactgaCGTT
ACAATGAATTTTCTTAGCGACGCGCATCTgtgcagtgtaggcccgtcgtc
atgcaaaaagaaccaattgtATTGCGCAAAAggccgtgtagcccgcttcg
agaaagtaaccggttaacaatactCTAGACACATTTTCGAGTAAGCCTCT
TCAGATATCGTCATATGAAtataatgaattattttttgctcATCACAGGT
ACAACTACATCTATTATGAAAGAAAAACCGTACCCAACACAACAGAATGC
ACCAACGCCATCCGCCCCTCCTTTCCCTTCAAAAACAGAAACGCCCCTCA
ACCCGAACGTGCAAATCATTGATCCAAATCAGAAAGAAACAACTTCACCT
CAAGAAGTGATCGACGATCAGAAACCTTCAGGCTCTGGTCAGAAGCCTCA
TAAAAAGAAGAGACGAAAGCATAAAAAGGAGAGCGGAAATGCAGAGGGCG
GGTCAGAAGAAAAGGGTGCTGATTCAGGGCGTAAAAAGAAACGTAGAAGA
CGCCCGAAAGATAAAAAACCTGTAGAGACAAATGATCTGACTGGAGAACA
ATCGACTGATCCAAACGCGAAACTCGTGAACAATGAAGATGCAACGCCCT
CTCCACCACCCTCTCCACCACCCTTGGTGCCCAAGCAGGAGACAGAAATA
GAAACTGATTCTAATAAGCCATTGCTTTCTGAGTAA Coding sequence (CDS) from alignment at sc0000300_pilon:300087..306872+ >XLOC_003887 ID=XLOC_003887|Name=XLOC_003887|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3054bp|location=Sequence derived from alignment at sc0000300_pilon:300087..306872+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGCTCTCAAATTATCGGTATACTTCATATTGATGGTCTTGTCACT
ACATGGAGTTATTGGCCAAAATGACTGTCCGATAAAGAAATTGGAAGGGT
TGTATGGAACATTAAATGGTGGAGAACAATTCAAATGTGATATGGAAACC
TATGAAATTACGATGGTTGCTCTCAAATTATCGGTATACTTCATATTGAT
GGTCTTGTCACTACATGGAGTTATTGGCCAAAATGACTGTCCGATAAAGA
AATTGGAAGGGTTGTATGGAACATTAAATGGTGGAGAACAATTCAAATGT
GATATGGAAACCTATGAAATTACGTTTGAGAGAAACACAGCATTTGGAAA
AGCTTTAGAACCACTAGAATCAGCTGTCGTCTTGGAATGGCGTATATTTC
ATGTTCCCGCAAATTTACCAGAGTGTGCCGCTGGTGCTGTAAGAGTTTAT
AAAGGTTTGAGAGAAACACAGCATTTGGAAAAGCTTTAGAACCACTAGAA
TCAGCTGTCGTCTTGGAATGGCGTATATTTCATGTTCCCGCAAATTTACC
AGAGTGTGCCGCTGGTGCTGTAAGAGTTTATAAAGGGTGTAAGAACAAGG
TGGAGATCGCAGAATTTTGTTCGGGAAACATGATTTCAGAGCTTCCACAT
AATATATATGCATACACTGATTGTCTGACTGTTGAACTTGATCGTATGAA
TGCCAAACAGAAAGGTAGTTTCATAGCCAGGTGGTACCAACTAACCGATA
AACAGGCTGCACCAGTACCTGGCTGCTCAGGGTGTAAGAACAAGGTGGAG
ATCGCAGAATTTTGTTCGGGAAACATGATTTCAGAGCTTCCACATAATAT
ATATGCATACACTGATTGTCTGACTGTTGAACTTGATCGTATGAATGCCA
AACAGAAAGGTAGTTTCATAGCCAGGTGGTACCAACTAACCGATAAACAG
GCTGCACCAGTACCTGGCTGCTCAGGAACTATAAAAGAAGCGCGTGGAAT
CGCAGGAACACTAAAATGGCCCAAAACAACAACCACTGATTGTGAGTTTC
AACTTGAAAGTGAGGCTACAAATGGTTACGTCATTCATATTATGGACATT
GCAGAAGGAGGAACAACTTGTGAAAGTTTGGATCAAAGAATCAAAGTAAA
AGAACTATAAAAGAAGCGCGTGGAATCGCAGGAACACTAAAATGGCCCAA
AACAACAACCACTGATTGTGAGTTTCAACTTGAAAGTGAGGCTACAAATG
GTTACGTCATTCATATTATGGACATTGCAGAAGGAGGAACAACTTGTGAA
AGTTTGGATCAAAGAATCAAAGTAAAAGATGCGGACGAATTTTCAAAAGG
GAAGTATCTTTGTTCACCAAAAAGAGTTGATACACGTTATTTCAAACCGA
ATATCGAAATGAAATACATTCAAGGAGCCGATTTGAACTGGAATAAACGA
GGTTTCGTGATGGGTTGGGTTTCTTTTAAAGACCCATACCATGATGCGGA
CGAATTTTCAAAAGGGAAGTATCTTTGTTCACCAAAAAGAGTTGATACAC
GTTATTTCAAACCGAATATCGAAATGAAATACATTCAAGGAGCCGATTTG
AACTGGAATAAACGAGGTTTCGTGATGGGTTGGGTTTCTTTTAAAGACCC
ATACCATGAGGAACCATCGTCAGGGGTGTCGGGTGGTGTGATTGCAGCCG
CCATCATAATTCCATTGGTTCTGCTCATCTTAGTTGTGTTTCTGGTCATT
TTCATTCTCAAAAGAAGGCGTGGCTTCGTTTTCCACAACCAAGAGGAACC
ATCGTCAGGGGTGTCGGGTGGTGTGATTGCAGCCGCCATCATAATTCCAT
TGGTTCTGCTCATCTTAGTTGTGTTTCTGGTCATTTTCATTCTCAAAAGA
AGGCGTGGCTTCGTTTTCCACAACCAAGGACCAAGATTTAAACCGGCTGC
AACACAACCCCCATCTGGTGATCCAGAAGCTGTTGCTTATAATCCACAAA
ATGGACCAAGATTTAAACCGGCTGCAACACAACCCCCATCTGGTGATCCA
GAAGCTGTTGCTTATAATCCACAAAATGGTACAACTACATCTATTATGAA
AGAAAAACCGTACCCAACACAACAGAATGCACCAACGCCATCCGCCCCTC
CTTTCCCTTCAAAAACAGAAACGCCCCTCAACCCGAACGTGCAAATCATT
GATCCAAATCAGAAAGAAACAACTTCACCTCAAGAAGTGATCGACGATCA
GAAACCTTCAGGCTCTGGTCAGAAGCCTCATAAAAAGAAGAGACGAAAGC
ATAAAAAGGAGAGCGGAAATGCAGAGGGCGGGTCAGAAGAAAAGGGTGCT
GATTCAGGGCGTAAAAAGAAACGTAGAAGACGCCCGAAAGATAAAAAACC
TGTAGAGACAAATGATCTGACTGGAGAACAATCGACTGATCCAAACGCGA
AACTCGTGAACAATGAAGATGCAACGCCCTCTCCACCACCCTCTCCACCA
CCCTTGGTGCCCAAGCAGGAGACAGAAATAGAAACTGATTCTAATAAGCC
ATTGCTTTCTGAGTAAGTACAACTACATCTATTATGAAAGAAAAACCGTA
CCCAACACAACAGAATGCACCAACGCCATCCGCCCCTCCTTTCCCTTCAA
AAACAGAAACGCCCCTCAACCCGAACGTGCAAATCATTGATCCAAATCAG
AAAGAAACAACTTCACCTCAAGAAGTGATCGACGATCAGAAACCTTCAGG
CTCTGGTCAGAAGCCTCATAAAAAGAAGAGACGAAAGCATAAAAAGGAGA
GCGGAAATGCAGAGGGCGGGTCAGAAGAAAAGGGTGCTGATTCAGGGCGT
AAAAAGAAACGTAGAAGACGCCCGAAAGATAAAAAACCTGTAGAGACAAA
TGATCTGACTGGAGAACAATCGACTGATCCAAACGCGAAACTCGTGAACA
ATGAAGATGCAACGCCCTCTCCACCACCCTCTCCACCACCCTTGGTGCCC
AAGCAGGAGACAGAAATAGAAACTGATTCTAATAAGCCATTGCTTTCTGA
GTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000300_pilon | genome | sc0000300_pilon:300087..306872 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1042-1527:6301 |
| Aaloc | 967-1038:4896 |
| Aaloc | 832-963:4211 |
| Aaloc | 667-828:3340 |
| Aaloc | 490-663:2511 |
| Aaloc | 295-486:1282 |
| Aaloc | 163-291:527 |
| Aaloc | 1-162:1 |
|
