XLOC_003860 (mRNA) -

Overview
NameXLOC_003860
Unique NameXLOC_003860
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000300_pilon:395071..402276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003860 ID=XLOC_003860|Name=XLOC_003860|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7206bp|location=Sequence derived from alignment at sc0000300_pilon:395071..402276- (Clytia hemisphaerica_ch_hm2_pilon)
ATAGCAGAACAAGAGCTATTACGGCTTCAACAAGAGTATCGCATCATGGA
AGGTGACCGCAAGGCATATAGCGAAGAATCACAAAACATCATACGTAAAC
AAAGAGCAGCCATTGCATCACTTCAAGCTGAAAACGAAGAGTTAATGAAA
GATAGTAAGCTAGCTGGTAGCCAACAAAATGAAAATAAGGTATTCTTTCA
AGTTTTAAATGAATAGATAGGGATAATATTTTAGATAGCCAAGTAGATCT
AGGTATTTTAGACACTCATTCAATTGTTTATACAGGGTTCATTGTCATTG
CAGGCGCCAGGGTTAATTATTGAAATAAAAAAAATTAAGTTTATTCATAA
GATTGCAAAATCTTGAGAATTGTTTTGCTCTCAGCTTCATTTTTAAGAAA
GCACCTTTTTGAGAAATAAGCTGTCAATTGACATTTAAATACATCCAGGT
ATATCTATCATCTTCTGTATTTTTCAAAAGGAGCATGACTTCAAGCAATA
TTCCCATAGTTTTTTCTAAGGAACATTACTTATTTTTATCAATTTTACTC
ATTTTCTAATTTTCTCATTTTTTGTAGGACACAGTAAATGTTGATCACCT
TAATAAGCTTCTTGTAGATGAAGGTTAGATCTTAGATATTTTTTGTGTGT
TTAATCCAATGCTAGTAGAGGAAGTCTTTAATTTTTCTTTTTTTAATAAT
TCAAGAGAACTTTATTTTAGCAACTGGTTCACTTTAAAAAGCGCACAAAC
TTTCGCAGTTTTTCAAACTTTTCTATTTTGTCAAGAATTTTTTTGATATT
TATTATAATCGCAAATATGACCAGAATTCCTGAATCGCAAAAGTTTCTTC
TGCTCGCGAAAGCTTGTAAGCTTAAAAAAATCAAACATTATCAGAGAACT
TTTCATATGGCAAAAATGGCAAAACTTGATGTTTTCTCTTACAGTGATTG
CTAAAGTTATATCATTTTCACTCTAGGTGACATGAAGGGGCACTTACAAA
AAGTTCAAGACATGATAACATCATATGATATCAAAGTAAGAATTACTAGC
ATACGAGTTTCACTTTTATAAATCGAAACTGATGCAACAAAACAGTTTAA
ATTCATAAACGCAAGACAATTTTGGGACTATCTAAAAAGACAATTTTCCT
GGCTGCTGTTACCTCACCAAAAAGGCCGTTTTATTAGATATTGTGTTGAT
ACGGCCAAGAAACTTTAATTGAATGTGCAAATGACCAAAATATATGCCAG
AAACATTTTACAAGTCAAGCCAATCTTTTTTATGTATTGCCTAGATTAAA
CAAACTGAAAAGAAGATTTCTCAACAAAGGAAAAGTATGGGCGGGTAAGA
GAAATTACATACTCATACAAACGAATTCATTGAAACATTGACTCGAAAAG
GTCAATGTTTAGTATCAGATCTTAATTTAAGCAGATGAATATTCATGCTC
ATTTTTATTTTTGTTGTTGTATAAGTTTATTCACTTAGGCCGGAGACTTG
CAGAAAGAGTAAAGTTCATGTCGCTGTTTATGTTTATGCTAAAGGATTTG
ATTTCTTCTGTAAGGTTAAACATATGAATATAGAAACTTGATTGTGAGAG
TTGGTTGTTAAACCAATGTAGTATAACTTTTTGCAACATCTTCAAACATT
TGATATATTTTTCTAATAGGGTGCATATGAGCCAAGCAAAACAAGTTGCA
CTGCAGAAGCACATCAGAGTACTGGAAAATCGTTTAGATCAGGTAAATAC
AAAACTCTGATATTTTTTAAAACATGTACCTAGTTTTCTAACAAGTCTAT
TGAACCGAATATTGGTATTAAATTTAAATATTTAATACCGTTTAATTTTT
TCAAAAATACTAAATCGCGAAATTAAATACACGCAAAAAATTTTCAAAAT
AGGCCGAAAATCGAAAATACTTATTTGTTACACTTAGTTACCATTTTTGT
TGCTAGTTTTGTCACTATTTTTGGTATGTTTACGCCCAATACGTTGTGTT
TCATGCAAAATCAGTCATTTTTTTGCTTCAGTCCCAATTTTTGAAAATGG
TCAATGCGAAAAATGTTTGCTCGAAATTCTTTTGCGAAATTTAATACCAA
TAAGGTAGAATTTAATTAAAGGCAAAAGGAGAATGAGAATAGCCAGTTAT
AGCAACTGAAAAAGAAAACGAAATAAAAGAATCACTTTCGTAAGCGTTTT
TGCTTTATCCGTCCATCAATTGCCATCATCAGTCACTGATGATAAAAAAA
GGTGTAGATTCTGTTTTTAAGCATTTAAGCGACCGTAGTGCACTGGTAGA
ACATCCAGCTACGGTGCGTAAGTTTGTGGGTTCAATCCCCAGCCGGGTCA
TACCAAAGATTCTCAAAATGGTACTTGATGTCTCTCTGCTTAATGCCCAG
CAATTAAAAGAAGGATCAAGGGTAAGTGGAGCAATCCAGCGAAAATAAGA
AGCGCCCTCACCTACCTTCGGGTAGACAGCTATCGAAATAGGAGCCTTCG
GGTCGCCTCCGACTGCGGTTGCAGACTTACTTAACTTACTTACTAGTTAT
CAGACATTTGATATTATGATATTACTTATCTTAACCTGAATATTCTTCTT
CCTTCATATTAAGGCCAATCGTAAATTCAACCATTCATTATCCGAAAACA
AAGACTTGCGAAGTGATATCGATCACATGCGCACTGAGAGAACCATCTTC
CAAAACTTGTACAAGAAACTTGAAAAGGTATAAGTTTTAGTCATTTTTTC
TCTGTGCATTGACAACGGTGTATCAGCTTATGCTCGACTACGTGACCTTT
TACATGTGATTATGAACATGGACATCCATTTCCTTTGTATTTTGGTAGAA
AGCCATGCTAGTTTCGTAAAATGAAACAATGGATTGATGTGATTTAAGCT
TGATTTCATGATTTTTCTCCTGTTTGAAGCTGACTTATACAAAACTTTCA
GGATTCTCTCTTGTTCTATTTCTTCATGTTTCATTATTTCAGAACCTAAA
TGACAATAAAGATGAAATAGCAAAAGTGATCGAATCATCAACTTCAGCTT
ATGATGCTAGGTTTGTTGTTACACTTTTTTAGGAATTTTGTCTATTCCTT
ATAAATGGGGTGGCTTTTTTCTTTTTTCTTGACTTTTTTGATTTTTTATC
GTATTAATGATATATTAAAAAGCTATACCCCGTTGTAAAGATATTTCTAA
GGAGAATAATCTAAAATAAAAAGATTTTTGAAAAATGAAGTTGAAAAAAT
GAATACATTGGACTTTCTAAAATATTTGACCCTTGCTGATTTTGAATGTT
CTAAAAGTCTGATGTTGTGATTTTAGAAGTATAAGAAGAAATCTTTGTTT
TTCTTTCTTTTTTTTTTAATTGTTTAAACTTACTAAACATCTTTCCAACG
TTGTATAACTTTTTATTTATATGAGCACAATTTATATCAACTTTAGTCTC
ATGATTTATCTATATTTTTATACTTTCTTTTTTCATCCAGAGACGATGCT
CAAAATAAGATGATTGCATTAAAAGAAAAGTCAGACAAGGAACTCTTACA
ATACAACACAGACCTTAAAGAACTAATGAGAATTATCGACCATGATCGCA
AATTAAAAGAGTTCATGTCAGTCAAATGCGAAGACCGCGCGGAAATGTTG
GGCTTTTCACTTCAGCACGCGCTTCGTAGGGAAGAACGCGAGAGAAAGAA
TGAAAAAGAAGATGTCATTCAGGTATTATTTTTACCCGTCGATTTCTTTT
GTGCGATTTCGTCATTTTGAAGAAATAAAGTATCGAAATAAGTTAAATTT
TTAGCGCTTTTTGCACTTTTTATCAATATAAAAGGGCTTGCGCGCTCTAA
TGAACCCTCGCGTACCTCCAATCTGTTTGCATAGCAAAGAAATTCACCAA
AGAGATTTAACCCAGACTCGAGATAATGAAGAGATAATGAATTTTTCCTA
TTTTGGTGACTTCATCGGCCCCAAAATGGCCAACATAATATTTGCCAGTT
TTCAAAGTCAATAATTCTCAGATCATAAATTGAATCTTTTTACTCGGACC
TCTATAACTCGAACAAGTCTCATTCTTCAGTGAACAATGCCTTATTAATC
TCACTCCCTAACTTGAAATTTCCTAAATTCGAACAAGTTTGAGTTCCCCG
TGCGTGTTCTAGACTTTCTAAAGCAAGGCCGGTCTCCACTTTCGCGCGAC
ATGTGCGAAAACCTTTTGACGTTTTTGTAAGCTCATTGGTCGGTTGAAAA
ATGAAGTAATTCCATTGGTCGAAATTGACATAACAGATGAAAAAAGTAGA
ACTTCCTTCAACTCTTTTTTTGTCCGCGCGAAAGTTTTTTATGACGTAAT
CTTTTCTTCAGGCAAAAAAGGTTAAGAAAAAAATTGTCGCTCATTTCGCG
CAAAATTGGATACCGGCCTTAAGTGTAGCGGCAATATAACAGTCTTGGTC
GTTACCTATTAAAAAAATCCATTTTCTCTTCTCTTCTTTTCAAGTCATAC
GAGATGGCTTTTGAGCAAATTAAAGACGCCACAGACATTGAAGATCTCCA
ATTACTGGTCGGAAAGTTCATTGAAACAGAGGATAAGAATTTCGCACTTT
TCAATTACGTCAATGAGCTAAACAACGAGATAGATCATTTGCATGAACAG
ATCTCTGATACCCAGAATGCAATTGAACGCTTCAAACAAGAGACCATTGA
CACGGATGAACAGCGAGAAGACATTTTGGAGAAACTTAAGGTACAAAAAA
ACACAGCGAAATCTAAAATGATATATGCAACTCCGGGGTTCCAAGTGGTC
TGGAAAAACCTTGGAAAACTGGAAAAAGGTCAACCTCTAAATGAGTTCAA
TAAAGTTCAATAAGCTGTAACATCAGTTCGCCTGTCTAATTAAAAAATGA
TTCCAGCTTATTAGAATTTCTTATGGAAGTGAAAACCATATGCCGTTTTT
TTTGGTCAAGGATGACATTTTCAATAAAGAGTCAGGGGAAATGTTCAACG
CTTTTATCTGGGAAAAAGGTTAGATTTTTATCCAAAAGTCAGGGAAAAGA
ATTTCGGGAGACTACTGGGAACCTTGATCAGCAATTTTCATTAAAAGTGA
AGCTACTCTGTTCCATGGTATTTGAATAATATTACTAAGAAAATAAAACC
TTTAACTGAAAGTACTTTTTCACTTTTAAATCTAGAAACGATAAAGATAT
TAGATTTTCGACACGGGCTACGTACATTTTTTCCCTTTTGCTAGCCTTAT
TATCGTTTGTCATCAATAAATTTCTTAGGAAGCTTTTTACTGTAGTTGAA
TTCTACTATTCGATTCTTTCCTTAGGAGAAATGTACAGAATCAGAAAAGG
AAGTTGATGGTTTCAACAAGGTTCAGAAAAAATCTTCCAACCTGCTGGAC
GAAGTTAGATCTGGTAAGAGTAAAGAACCGAAGTAATACCCATTCCCCAT
CTCGATGACACCCGATGAGACATTCTCAGCGGTGGTTACAGAATATACTC
GAAAATTTTGAGTACCTCCTTTAACCACCGTTGCATTCTAGCAAATGATA
AAAAGGAGGAACCAAATACCGATGGTGTTTTTAAAATCGCCTGCTTTTAA
ATCCTTGAACGGAACTGGAGAAACTACTAATTTTAGATCTCAAAAAATCT
AATGGAGTTGATATTTTAAGAAAAGTTCTAATAAGAACCGATAAATTTTG
ACTCAAAAACTCAAAACTTTTGAAAGCTGTTCTTAGATATATGGGTGTTG
TTTTAATTGGGAGCTTTAAAGCCATAACTTCTCATGAACACACTACTATT
CGAGAAAACTATAAAGTAATGCATTTACTTGGGACCTTTACCCAGTATTG
TTCTAAAAAATTAAGTAAAAAGTTTGTTTTTTTTAACTAAAGGTATCGAA
TCGACATTTAAGAAGATCAATTGTGACGTCTCCTCTTTGGTCGATATGTT
GGGCGGAGATGACGGCGTCACTAACGCCAATCTCATGCAGGTACGGGAGA
AAACCCATAACCCTTTGATGGTAAAGTGGATGCTCTACCGACTGAGCTAT
CTGGCCACCAGTTTGTAGATAACACTAATATACTACCTGTAATGAGATGT
CCGAATCGGCTTATACAATATCCTTAACAGAACTACTTTAAAATGCTATA
AGTTTCATATTACTCGTTAGATAATCCAGTCAAAATTGTTTTCTGAATCA
AAATTCATTATTGTATAATTCTCAAATTCGTTTCCATTTTACTTTTTTAG
TATTTGGGTATCATTGAACAACGAACAAATGAACTTCTTCAAGTACAAGC
CTTCTTAGCTGCTAAGGTAAGTGGGATCTTGTGAAATTATTTCTCAGGTG
CCAAATCAACGCCCCTTCTCCTATTTTGCTCTAAATAGCCTGGCTTTTGT
CTATAATTACCTTATTTTGGGGGGTATTTAGAGTAAACTAGTCCCCGGCA
ATTAGATCCGCCCCCCCCCTCTCTATTAAAAATTTTGGCACCTGAGAATA
ACGGGAAGGATGGAAAATGAATTTAAGTTTCACTGAATTTAAGTACAACT
CGCGTTCATCGAAGTGGCATGGCATCGGGTACCGTTAATTCGGGATTATT
ATTCCCTCCTAAAATGTAATCAATGTTTCATTTCTACTAATGATATTTTC
ATAAACTTACGGATATATTGACAGCCTAATTTTCTTTCTTTTGAAATTTA
CTGTTTTTACTAAAAGTTGGAGCTAATTTTGGAGAGATTATAAATTTTCA
AACTCGTAGGATGTTGACGTGGCACCAACAACGACTGAGCGCGCCGAATC
AGTAGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCAATCTCCA
TCCAACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATCTTTCCAA
AGTGAAGATGAAAATCGCCCGCTCACTCAACAAGAGTTGAGGCAGAGAAT
CATGAAAGGGGTAAGTCACTTGTCTATCTGCAGTAGATTCTCTTCAACTC
GAAACTCTGCAACTCGATATTTCCTTGACTCGAACAAATTTATCACTCTG
GAAATTTCGACCTGTCTTTCAACTCAATCTATTCTTTTCTAGATCAACAA
ACGGGAGAATAGTTCTCGGCGTGAAAAAGAGGGCCGCAATTCTCCAGACT
ACGAACCTGAACGGCCCAAAAAGACCAGTAAGAAGTCCCCGATCAAAGAG
CGCTGA

Coding sequence (CDS) from alignment at sc0000300_pilon:395071..402276-

>XLOC_003860 ID=XLOC_003860|Name=XLOC_003860|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3288bp|location=Sequence derived from alignment at sc0000300_pilon:395071..402276- (Clytia hemisphaerica_ch_hm2_pilon)
ATAGCAGAACAAGAGCTATTACGGCTTCAACAAGAGTATCGCATCATGGA
AGGTGACCGCAAGGCATATAGCGAAGAATCACAAAACATCATACGTAAAC
AAAGAGCAGCCATTGCATCACTTCAAGCTGAAAACGAAGAGTTAATGAAA
GATAGTAAGCTAGCTGGTAGCCAACAAAATGAAAATAAGATAGCAGAACA
AGAGCTATTACGGCTTCAACAAGAGTATCGCATCATGGAAGGTGACCGCA
AGGCATATAGCGAAGAATCACAAAACATCATACGTAAACAAAGAGCAGCC
ATTGCATCACTTCAAGCTGAAAACGAAGAGTTAATGAAAGATAGTAAGCT
AGCTGGTAGCCAACAAAATGAAAATAAGGACACAGTAAATGTTGATCACC
TTAATAAGCTTCTTGTAGATGAAGGACACAGTAAATGTTGATCACCTTAA
TAAGCTTCTTGTAGATGAAGGTGACATGAAGGGGCACTTACAAAAAGTTC
AAGACATGATAACATCATATGATATCAAAGTGACATGAAGGGGCACTTAC
AAAAAGTTCAAGACATGATAACATCATATGATATCAAAATTAAACAAACT
GAAAAGAAGATTTCTCAACAAAGGAAAAGTATGGGCGGATTAAACAAACT
GAAAAGAAGATTTCTCAACAAAGGAAAAGTATGGGCGGGGTGCATATGAG
CCAAGCAAAACAAGTTGCACTGCAGAAGCACATCAGAGTACTGGAAAATC
GTTTAGATCAGGGTGCATATGAGCCAAGCAAAACAAGTTGCACTGCAGAA
GCACATCAGAGTACTGGAAAATCGTTTAGATCAGGCCAATCGTAAATTCA
ACCATTCATTATCCGAAAACAAAGACTTGCGAAGTGATATCGATCACATG
CGCACTGAGAGAACCATCTTCCAAAACTTGTACAAGAAACTTGAAAAGGC
CAATCGTAAATTCAACCATTCATTATCCGAAAACAAAGACTTGCGAAGTG
ATATCGATCACATGCGCACTGAGAGAACCATCTTCCAAAACTTGTACAAG
AAACTTGAAAAGAACCTAAATGACAATAAAGATGAAATAGCAAAAGTGAT
CGAATCATCAACTTCAGCTTATGATGCTAGAACCTAAATGACAATAAAGA
TGAAATAGCAAAAGTGATCGAATCATCAACTTCAGCTTATGATGCTAGAG
ACGATGCTCAAAATAAGATGATTGCATTAAAAGAAAAGTCAGACAAGGAA
CTCTTACAATACAACACAGACCTTAAAGAACTAATGAGAATTATCGACCA
TGATCGCAAATTAAAAGAGTTCATGTCAGTCAAATGCGAAGACCGCGCGG
AAATGTTGGGCTTTTCACTTCAGCACGCGCTTCGTAGGGAAGAACGCGAG
AGAAAGAATGAAAAAGAAGATGTCATTCAGAGACGATGCTCAAAATAAGA
TGATTGCATTAAAAGAAAAGTCAGACAAGGAACTCTTACAATACAACACA
GACCTTAAAGAACTAATGAGAATTATCGACCATGATCGCAAATTAAAAGA
GTTCATGTCAGTCAAATGCGAAGACCGCGCGGAAATGTTGGGCTTTTCAC
TTCAGCACGCGCTTCGTAGGGAAGAACGCGAGAGAAAGAATGAAAAAGAA
GATGTCATTCAGTCATACGAGATGGCTTTTGAGCAAATTAAAGACGCCAC
AGACATTGAAGATCTCCAATTACTGGTCGGAAAGTTCATTGAAACAGAGG
ATAAGAATTTCGCACTTTTCAATTACGTCAATGAGCTAAACAACGAGATA
GATCATTTGCATGAACAGATCTCTGATACCCAGAATGCAATTGAACGCTT
CAAACAAGAGACCATTGACACGGATGAACAGCGAGAAGACATTTTGGAGA
AACTTAAGTCATACGAGATGGCTTTTGAGCAAATTAAAGACGCCACAGAC
ATTGAAGATCTCCAATTACTGGTCGGAAAGTTCATTGAAACAGAGGATAA
GAATTTCGCACTTTTCAATTACGTCAATGAGCTAAACAACGAGATAGATC
ATTTGCATGAACAGATCTCTGATACCCAGAATGCAATTGAACGCTTCAAA
CAAGAGACCATTGACACGGATGAACAGCGAGAAGACATTTTGGAGAAACT
TAAGGAGAAATGTACAGAATCAGAAAAGGAAGTTGATGGTTTCAACAAGG
TTCAGAAAAAATCTTCCAACCTGCTGGACGAAGTTAGATCTGGAGAAATG
TACAGAATCAGAAAAGGAAGTTGATGGTTTCAACAAGGTTCAGAAAAAAT
CTTCCAACCTGCTGGACGAAGTTAGATCTGGTATCGAATCGACATTTAAG
AAGATCAATTGTGACGTCTCCTCTTTGGTCGATATGTTGGGCGGAGATGA
CGGCGTCACTAACGCCAATCTCATGCAGGTATCGAATCGACATTTAAGAA
GATCAATTGTGACGTCTCCTCTTTGGTCGATATGTTGGGCGGAGATGACG
GCGTCACTAACGCCAATCTCATGCAGTATTTGGGTATCATTGAACAACGA
ACAAATGAACTTCTTCAAGTACAAGCCTTCTTAGCTGCTAAGTATTTGGG
TATCATTGAACAACGAACAAATGAACTTCTTCAAGTACAAGCCTTCTTAG
CTGCTAAGGATGTTGACGTGGCACCAACAACGACTGAGCGCGCCGAATCA
GTAGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCAATCTCCAT
CCAACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATCTTTCCAAA
GTGAAGATGAAAATCGCCCGCTCACTCAACAAGAGTTGAGGCAGAGAATC
ATGAAAGGGGATGTTGACGTGGCACCAACAACGACTGAGCGCGCCGAATC
AGTAGGACTTCTCGGAAAAGGTCCTCTTCCCTTACCTGCAGCAATCTCCA
TCCAACCTCCCTCAACTGGCGATGATTATGACTCGGATTCATCTTTCCAA
AGTGAAGATGAAAATCGCCCGCTCACTCAACAAGAGTTGAGGCAGAGAAT
CATGAAAGGGATCAACAAACGGGAGAATAGTTCTCGGCGTGAAAAAGAGG
GCCGCAATTCTCCAGACTACGAACCTGAACGGCCCAAAAAGACCAGTAAG
AAGTCCCCGATCAAAGAGCGCTGAATCAACAAACGGGAGAATAGTTCTCG
GCGTGAAAAAGAGGGCCGCAATTCTCCAGACTACGAACCTGAACGGCCCA
AAAAGACCAGTAAGAAGTCCCCGATCAAAGAGCGCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_003860XLOC_003860-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300_pilongenomesc0000300_pilon:395071..402276 -
Properties
Property NameValue
Aaloc1729-1842:115
Aaloc1528-1728:448
Aaloc1462-1527:957
Aaloc1366-1461:1313
Aaloc1276-1362:1882
Aaloc1030-1275:2713
Aaloc799-1029:3716
Aaloc730-795:4215
Aaloc616-729:4594
Aaloc544-615:5537
Aaloc493-540:5913
Aaloc436-492:6229
Aaloc388-432:6630
Aaloc199-387:7207