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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000412_pilon:93291..98648+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_003732 ID=XLOC_003732|Name=XLOC_003732|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5358bp|location=Sequence derived from alignment at sc0000412_pilon:93291..98648+ (Clytia hemisphaerica_ch_hm2_pilon)
GCACACGTCCATCACGTGATCAAGTCGCAACCAATCAAAGCAAAACACGA
TAATTCAAActttaaaacctttaaaattcaGAGAATCGGCAAAAGTCAAT
TTGTAGTCGTGTTGTGTAGTGGAAACGTGGAACTGAGTTGGACAAAGTGT
CATACACAGTCATCCACAATGGCATCAAGAAAATTCTGGATGTTTGGTCT
CTTGGCCGTCCtttttttgtcatgttagtatttcattttattttttgcct
TTCTTACGACTGTCTCCTTCTCTTAGGCGCTATTTTCAAGGGAAAATGTT
TCCTAGAGTTTTTTACAAAGATACATTCACATTGAATTTCTATCGTGTTA
AATGTTCACAATAATTTTCACAACAGTTTAAAACTATTATCGAAAATATT
TACAACATGTTATAGGTACCTAGTCATTCATGTCTTTCACATATTAGTTT
CAATATTGCTTGTTAGGCCCTTTATTGGGGAAACTGTAGGAAAGTCAATT
TCTCTGGGGTTTTTAGTTTATATCCAAGAATGGGTAAGGTCTATATAACT
GGAGTTTCTAGCTGTAAAGCTGGAAGTGAAATTCACCAATACATATGGTA
ATGCTTTCTATATTTATCATAGAATAGTCTTTCAGTGTAGGTATGAATAa
ttggattttatttttcaggttcAGTCAAAGCTGAAGAAAGTGATGACGCT
GAAATCGAGACTCCCAAAGTTGATGAAGATGTAGGCAAGAGTCGTGATGG
TTCAAAAACTGATGATGAAGTTGTTCAAAGGGAGGAAGAAGCTATCAACA
TCGATGGCCTCAGTGTTGcagaaatgaaacaaatgagAGAATCTTCTGAA
AAACATGCTTTCCAAGCTGAAGTTAGCCGTATGATGAAACTGATCATCAA
TTCcctttacaaaaacaaagagGTAATTTTATTTATGTTGGTGAAAAAGT
GCTCAAATTTCTATGAGAAATCACGAAAATATAGTACTTGTATTATTCTG
GAAAATGCATCTCAACATTCAACACATGTTTCATTTCCtttttttGAATC
AAATAAATTGCAGGTCATTAACTTAATTGCTTATAGATATTTCCTCTTTT
CTCCTGCTTCCAGTTTTGTACTTATTaattacatttcaaaaaaattgcaa
cTAGCAGCTGTTAAAACAACTTATACAAGTCtagataaatattgaaaata
tcaatATCAAGATATATCAAACTAAATCTAGACAGAGGAGATTTCTTTCT
ATATGTTGTCAtaatagcaaaatatttttggtgctttctgtttttaattt
ctttgaattattctAAAGAGCTTCATTGCTTTCATTCATttcatgtttgt
tttgaaagcCAGAGGGCTTAAATGAAAAAGGAGTTTAGCACCAGAGAACA
ACACTTTATTTTGCTACATAGAAGATAAAAGAGTATTGTTAAACATAgac
atttaatgatttttttctttatagatCTTCTTGAGAGAATTGATTTCCAA
CTCCTCAGATGCTTTGGACAAAATTAGATTCTTGTCTCTTACCGACACAG
ATGCATTGGCTGCTACAGATGAACTCTCCATCAAAGTCAAAGCTGATAAG
GACAACCATGTTCTACATATCACTGATACAGGTATTGGTATGACCAAAGA
TGACCTTATCAAACAACTTGGTACCATTGCTAAATCAGGAACCAGTGAAT
TCTTCTCCAAGTTGCAAGAAGCAGGTaagaattttttctatttttcatgg
ttcttttgtcattttttttattgtggCCGCATTATTTCAttcaaataaaa
tcaaacttGAAACTAAGATATGtgtcaattattattttattttgaatact
tGATTTTGTGTTTGAATGTAGAACATTTTCAGTACCACAATTGCTATGTT
GGATTTTGCTGTTCATTTTCATTACTATATATTTCACTTTCAGGAACAAC
TGATCAAGCcagtgatttgattggtcaattTGGTGTTGGTTTCTACTCTG
CTTTCTTGGTTGCCGATAAAGTCATCGTCACATCAAAGAACAATGCTGAC
AAACAACACATCTGGGAATCTGACTCTGCTGAATTTTCTGTTGTTGAGGA
TCCACGTGGAGATACCTTGAAACGTGGAACCCAAGTCAGTTTGTACTTGA
AAGAGGAAGCTCGTGATTTCTTAGAGCCAGACACTTTGGAGAATTTGATC
AAGAAATACTCTCAATTTATCAACTTTAACATCTTCTTGTGGAAATCaaa
gactgaagaagtcgaggaacccattgaagaagctgctgaagaaaagaagg
aagaagaaactccagaagaggtaaagagatcagaaTTCAAATCcctattt
tggtaatttttacacttttggctaACTCATTTCTAAAGtcccaaaattta
agttcaGCTTTCATCCATTACAATAAAAAGAGTATAGGTTAAAAATCATC
CTTAATATTACACAATATATCCACTAACTTGTATACTTTTTCAGTGCTTC
CTGAATaagctatttttcaaaatagctttaaaaaagTAGCACAAAGCTCC
AAATATCTTTCAGAGAGcgtttgttttaaattttgaatttttggcttAAC
GCATTTCATTATTTTATGATTTagaagaaagatgaggatgatgaagccaa
ggttgaagaagaaaaagaagaagaaaaaccaaaaaccaagaaagTCTCCA
AGACAACATGGGATTGGGAAATAATGAACTCATCCAAACCAATCTGGacc
aaaaaaccaaaagaagTTACTGATGATGAATATAACGAGTTCTACAAAGC
CATGACCAAGGTAATTTTCTAATCACAGTCTGTAGAATTCAAGTAATTTA
ATCACCTGATACCTTTCCCACATACTcattttattgtaaaaagtaaaatt
gttAAAACCTGTCAGATTTTTCATACATCTTGGGTTATTTTGacctttta
aaatttaatattACTTAACATTTTTCCTTAGGAATCTGATACTCCAATGG
CCAAGACTCACTTTGTTGCTGAAGGAGAAGTTACCTTCAAATCCATCTTG
TACGTTCCAACCACCTCTCCACATGATATGTTTCAAGACTATGGAAAACG
CAGAgaacaaattaaattgtttgTTAGGCGTGTTTTTATCACAGATGATT
TCCAAGACATGATGCCTAAATATTTATCTTTCATCCGTGGTATTGTTGAT
TCCGATGATTTACCTTTGAATGTATCTCGTGAGCAACTTCAACAACATAA
ATTATTGAAGGTCATTAAGAAGAAATTGGTCCGAAAAGCTCTTGACATGA
TCAAGAAGATCCCAGATGCAGACTACCTCGATAAATTCTGGAAAGAATTC
AGTACCAAGTAAGTTCCCTCTGGAATACAACATGAGATCTTTTTATCCTC
AAAACCTGCTTGCGGTATATAATCTTGATTTCTCTCTTGCTATGTGAGGA
GTTTTTTGAAGTGTCTCATTTGGTTCTAAGTAAGTAACAGCAGCAATGTT
TGAAATAACTGAAAGGTATGTTTATGAACCTTTATTCAAGtcaaattatc
tttttttcctatacatcataaaatttgtttcttTAGTATCAAACTTGGAA
TCATGGAAGATCAAGCTAACCGAACCAGACTTTCAAAATTGTTGCGTTTC
AAATCATCAAATGATGCTGAAAAACAAACTTCATTAGCTGACTATGTTGC
AAGAATGAAGGACAAGCAAGAACATATTTATTTCATTGCTGGATCAAGCC
TTGATGAAGTCAAGAGCTCCCCATTCGTTGAACGTCTTTTGAAAAGAGGT
GTGTAAGACTAAATTTAGAGCATTTATTTGTGtattaaaatcaaaaccaa
gTTCGATCTGCAACCTTCGTTGGCAAATTTATGGGGTATGAGAACTAGAT
TAACTTTTGACTATAAGTATTTATTCTGACTGATGTTCGtttttttCTTA
GGATACGAAGTCTTGTACTTGACTGAGCCAGTCGATGAATACACCATGCA
AAGTTTACCCGATTTTGAAGGAAAGAAATTCCAAAACGTTGCCAAAGACG
GTCTCAAAATGGGAGATGACACAAAAGAAAAGGCTAAGGTTGAAGAATTA
GAAAAAGAATACGAACCACTCTTGAAATGGTTGAAAGAAGACAGTTTGAA
AGACTTGATTGAAAAAGCTACCGTCTCTCAACGTTTGACTGAATCACCAT
GTGCCTTGGTTGCCAGCTCTTATGGATGGTCTGGTAACATGGAACGTATC
ATGAATTCACAAGCTTACGCTAAAGCTAAAGACCCAACTCAAAAGTAAGT
TCATTGAACGATAAGAATTTATAACCACCTCTGTTTTGTTCTGACAAAAT
TGTTCTGTAAAATCTATTTTCGTCTgaaatgaaaattcttttttgcttAC
TAAAGGAATATCTTTCTTGGCTATCCCTGTAGTATAATCTTGTTGCGAAT
AAAAGTTGAAACTTAGTGGgcataaatttacaaaaataatataCTTCAAG
TTTGGAAGTACAGTTTCTCTATATAGctattttaaactatttttttcagC
TTCTATGCTACCCAAAAGAAGACTTTGGAGGTTAACGTATACCATCCATT
GATCAAAGAATTGCACAAGCGTGTTGGTGACAACAAAGAGGATCAAACTG
CCAAAGATCTCGCCCGCGTCATGTTCGAGACAGCCACTATGAGATCAGGA
TACGTCATCAAGGATAGTGCAGATTTTGCTGGTCGTATTGAACGCATGTT
GAGACTTTCAATGGGTGTTGATTTGGATGCTAAAGTTGATTTACCAGAAG
AAGAGGAAGAATCTGCAGAAGAAGAAGCTACTGAAGAGGTTGGTTACTAA
TTCGATTTCTACGGAGTATacaattttcatcgaatagtagagcgtcgttt
ttGAGAgcttcttgttgacggtgacttttaattttatcgaataatggagc
atatcgaatagtagaacgtcgaattagagagcgtcaactgtacttttCAA
TATCGTATCATTCGACGTTATTCAAATTTCACCGAAGTTAGTTCTCGACA
ATATTAGTTCGTTCCCTCTACTAAGGTTAATCCTGGTTAATCGTGTAATT
CATTTGGGACGAGACAGGAATTCTAGAATTCTGTGCTTGTGGCCTATTAC
CTGTTTTCTCGGGTTTTTTCGTTTTAAGAAGTTCCCGaggtttcaaaaca
atttttactTATTTCTCCAGGTCAATGCTGACAACGAAGAAGAAGATACT
CCAGTCGATATTCCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCTAA
AGAAGATAGTGCCGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGATG
AACTATAA Coding sequence (CDS) from alignment at sc0000412_pilon:93291..98648+ >XLOC_003732 ID=XLOC_003732|Name=XLOC_003732|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5298bp|location=Sequence derived from alignment at sc0000412_pilon:93291..98648+ (Clytia hemisphaerica_ch_hm2_pilon)
GCACACGTCCATCACGTGATCAAGTCGCAACCAATCAAAGCAAAACACGA
TAATTCAAActttaaaacctttaaaattcaGAGAATCGGCAAAAGTCAAT
TTGTAGTCGTGTTGTGTAGTGGAAACGTGGAACTGAGTTGGACAAAGTGT
CATACACAGTCATCCACAATGGCATCAAGAAAATTCTGGATGTTTGGTCT
CTTGGCCGTCCtttttttgtcatGCACACGTCCATCACGTGATCAAGTCG
CAACCAATCAAAGCAAAACACGATAATTCAAActttaaaacctttaaaat
tcaGAGAATCGGCAAAAGTCAATTTGTAGTCGTGTTGTGTAGTGGAAACG
TGGAACTGAGTTGGACAAAGTGTCATACACAGTCATCCACAATGGCATCA
AGAAAATTCTGGATGTTTGGTCTCTTGGCCGTCCtttttttgtcatgttc
AGTCAAAGCTGAAGAAAGTGATGACGCTGAAATCGAGACTCCCAAAGTTG
ATGAAGATGTAGGCAAGAGTCGTGATGGTTCAAAAACTGATGATGAAGTT
GTTCAAAGGGAGGAAGAAGCTATCAACATCGATGGCCTCAGTGTTGcaga
aatgaaacaaatgagAGAATCTTCTGAAAAACATGCTTTCCAAGCTGAAG
TTAGCCGTATGATGAAACTGATCATCAATTCcctttacaaaaacaaagag
gttcAGTCAAAGCTGAAGAAAGTGATGACGCTGAAATCGAGACTCCCAAA
GTTGATGAAGATGTAGGCAAGAGTCGTGATGGTTCAAAAACTGATGATGA
AGTTGTTCAAAGGGAGGAAGAAGCTATCAACATCGATGGCCTCAGTGTTG
cagaaatgaaacaaatgagAGAATCTTCTGAAAAACATGCTTTCCAAGCT
GAAGTTAGCCGTATGATGAAACTGATCATCAATTCcctttacaaaaacaa
agagatCTTCTTGAGAGAATTGATTTCCAACTCCTCAGATGCTTTGGACA
AAATTAGATTCTTGTCTCTTACCGACACAGATGCATTGGCTGCTACAGAT
GAACTCTCCATCAAAGTCAAAGCTGATAAGGACAACCATGTTCTACATAT
CACTGATACAGGTATTGGTATGACCAAAGATGACCTTATCAAACAACTTG
GTACCATTGCTAAATCAGGAACCAGTGAATTCTTCTCCAAGTTGCAAGAA
GCAGatCTTCTTGAGAGAATTGATTTCCAACTCCTCAGATGCTTTGGACA
AAATTAGATTCTTGTCTCTTACCGACACAGATGCATTGGCTGCTACAGAT
GAACTCTCCATCAAAGTCAAAGCTGATAAGGACAACCATGTTCTACATAT
CACTGATACAGGTATTGGTATGACCAAAGATGACCTTATCAAACAACTTG
GTACCATTGCTAAATCAGGAACCAGTGAATTCTTCTCCAAGTTGCAAGAA
GCAGGAACAACTGATCAAGCcagtgatttgattggtcaattTGGTGTTGG
TTTCTACTCTGCTTTCTTGGTTGCCGATAAAGTCATCGTCACATCAAAGA
ACAATGCTGACAAACAACACATCTGGGAATCTGACTCTGCTGAATTTTCT
GTTGTTGAGGATCCACGTGGAGATACCTTGAAACGTGGAACCCAAGTCAG
TTTGTACTTGAAAGAGGAAGCTCGTGATTTCTTAGAGCCAGACACTTTGG
AGAATTTGATCAAGAAATACTCTCAATTTATCAACTTTAACATCTTCTTG
TGGAAATCaaagactgaagaagtcgaggaacccattgaagaagctgctga
agaaaagaaggaagaagaaactccagaagagGAACAACTGATCAAGCcag
tgatttgattggtcaattTGGTGTTGGTTTCTACTCTGCTTTCTTGGTTG
CCGATAAAGTCATCGTCACATCAAAGAACAATGCTGACAAACAACACATC
TGGGAATCTGACTCTGCTGAATTTTCTGTTGTTGAGGATCCACGTGGAGA
TACCTTGAAACGTGGAACCCAAGTCAGTTTGTACTTGAAAGAGGAAGCTC
GTGATTTCTTAGAGCCAGACACTTTGGAGAATTTGATCAAGAAATACTCT
CAATTTATCAACTTTAACATCTTCTTGTGGAAATCaaagactgaagaagt
cgaggaacccattgaagaagctgctgaagaaaagaaggaagaagaaactc
cagaagagaagaaagatgaggatgatgaagccaaggttgaagaagaaaaa
gaagaagaaaaaccaaaaaccaagaaagTCTCCAAGACAACATGGGATTG
GGAAATAATGAACTCATCCAAACCAATCTGGaccaaaaaaccaaaagaag
TTACTGATGATGAATATAACGAGTTCTACAAAGCCATGACCAAGaagaaa
gatgaggatgatgaagccaaggttgaagaagaaaaagaagaagaaaaacc
aaaaaccaagaaagTCTCCAAGACAACATGGGATTGGGAAATAATGAACT
CATCCAAACCAATCTGGaccaaaaaaccaaaagaagTTACTGATGATGAA
TATAACGAGTTCTACAAAGCCATGACCAAGGAATCTGATACTCCAATGGC
CAAGACTCACTTTGTTGCTGAAGGAGAAGTTACCTTCAAATCCATCTTGT
ACGTTCCAACCACCTCTCCACATGATATGTTTCAAGACTATGGAAAACGC
AGAgaacaaattaaattgtttgTTAGGCGTGTTTTTATCACAGATGATTT
CCAAGACATGATGCCTAAATATTTATCTTTCATCCGTGGTATTGTTGATT
CCGATGATTTACCTTTGAATGTATCTCGTGAGCAACTTCAACAACATAAA
TTATTGAAGGTCATTAAGAAGAAATTGGTCCGAAAAGCTCTTGACATGAT
CAAGAAGATCCCAGATGCAGACTACCTCGATAAATTCTGGAAAGAATTCA
GTACCAAGAATCTGATACTCCAATGGCCAAGACTCACTTTGTTGCTGAAG
GAGAAGTTACCTTCAAATCCATCTTGTACGTTCCAACCACCTCTCCACAT
GATATGTTTCAAGACTATGGAAAACGCAGAgaacaaattaaattgtttgT
TAGGCGTGTTTTTATCACAGATGATTTCCAAGACATGATGCCTAAATATT
TATCTTTCATCCGTGGTATTGTTGATTCCGATGATTTACCTTTGAATGTA
TCTCGTGAGCAACTTCAACAACATAAATTATTGAAGGTCATTAAGAAGAA
ATTGGTCCGAAAAGCTCTTGACATGATCAAGAAGATCCCAGATGCAGACT
ACCTCGATAAATTCTGGAAAGAATTCAGTACCAATATCAAACTTGGAATC
ATGGAAGATCAAGCTAACCGAACCAGACTTTCAAAATTGTTGCGTTTCAA
ATCATCAAATGATGCTGAAAAACAAACTTCATTAGCTGACTATGTTGCAA
GAATGAAGGACAAGCAAGAACATATTTATTTCATTGCTGGATCAAGCCTT
GATGAAGTCAAGAGCTCCCCATTCGTTGAACGTCTTTTGAAAAGAGTATC
AAACTTGGAATCATGGAAGATCAAGCTAACCGAACCAGACTTTCAAAATT
GTTGCGTTTCAAATCATCAAATGATGCTGAAAAACAAACTTCATTAGCTG
ACTATGTTGCAAGAATGAAGGACAAGCAAGAACATATTTATTTCATTGCT
GGATCAAGCCTTGATGAAGTCAAGAGCTCCCCATTCGTTGAACGTCTTTT
GAAAAGAGGATACGAAGTCTTGTACTTGACTGAGCCAGTCGATGAATACA
CCATGCAAAGTTTACCCGATTTTGAAGGAAAGAAATTCCAAAACGTTGCC
AAAGACGGTCTCAAAATGGGAGATGACACAAAAGAAAAGGCTAAGGTTGA
AGAATTAGAAAAAGAATACGAACCACTCTTGAAATGGTTGAAAGAAGACA
GTTTGAAAGACTTGATTGAAAAAGCTACCGTCTCTCAACGTTTGACTGAA
TCACCATGTGCCTTGGTTGCCAGCTCTTATGGATGGTCTGGTAACATGGA
ACGTATCATGAATTCACAAGCTTACGCTAAAGCTAAAGACCCAACTCAAA
AGATACGAAGTCTTGTACTTGACTGAGCCAGTCGATGAATACACCATGCA
AAGTTTACCCGATTTTGAAGGAAAGAAATTCCAAAACGTTGCCAAAGACG
GTCTCAAAATGGGAGATGACACAAAAGAAAAGGCTAAGGTTGAAGAATTA
GAAAAAGAATACGAACCACTCTTGAAATGGTTGAAAGAAGACAGTTTGAA
AGACTTGATTGAAAAAGCTACCGTCTCTCAACGTTTGACTGAATCACCAT
GTGCCTTGGTTGCCAGCTCTTATGGATGGTCTGGTAACATGGAACGTATC
ATGAATTCACAAGCTTACGCTAAAGCTAAAGACCCAACTCAAAACTTCTA
TGCTACCCAAAAGAAGACTTTGGAGGTTAACGTATACCATCCATTGATCA
AAGAATTGCACAAGCGTGTTGGTGACAACAAAGAGGATCAAACTGCCAAA
GATCTCGCCCGCGTCATGTTCGAGACAGCCACTATGAGATCAGGATACGT
CATCAAGGATAGTGCAGATTTTGCTGGTCGTATTGAACGCATGTTGAGAC
TTTCAATGGGTGTTGATTTGGATGCTAAAGTTGATTTACCAGAAGAAGAG
GAAGAATCTGCAGAAGAAGAAGCTACTGAAGAGCTTCTATGCTACCCAAA
AGAAGACTTTGGAGGTTAACGTATACCATCCATTGATCAAAGAATTGCAC
AAGCGTGTTGGTGACAACAAAGAGGATCAAACTGCCAAAGATCTCGCCCG
CGTCATGTTCGAGACAGCCACTATGAGATCAGGATACGTCATCAAGGATA
GTGCAGATTTTGCTGGTCGTATTGAACGCATGTTGAGACTTTCAATGGGT
GTTGATTTGGATGCTAAAGTTGATTTACCAGAAGAAGAGGAAGAATCTGC
AGAAGAAGAAGCTACTGAAGAGGTCAATGCTGACAACGAAGAAGAAGATA
CTCCAGTCGATATTCCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCT
AAAGAAGATAGTGCCGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGA
TGAACTATAAGTCAATGCTGACAACGAAGAAGAAGATACTCCAGTCGATA
TTCCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCTAAAGAAGATAGT
GCCGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGATGAACTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000412_pilon | genome | sc0000412_pilon:93291..98648 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2509-2646:5221 |
| Aaloc | 2470-2508:4800 |
| Aaloc | 2224-2469:4551 |
| Aaloc | 1882-2220:3954 |
| Aaloc | 1669-1878:3588 |
| Aaloc | 1291-1665:2982 |
| Aaloc | 1105-1290:2625 |
| Aaloc | 730-1104:1946 |
| Aaloc | 478-726:1475 |
| Aaloc | 226-477:671 |
| Aaloc | 1-222:1 |
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