XLOC_003413 (mRNA) -

Overview


Name	XLOC_003413
Unique Name	XLOC_003413
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000660_pilon:37844..45587+
coding sequence from alignment at sc0000660_pilon:37844..45587+

mRNA from alignment at sc0000660_pilon:37844..45587+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_003413 ID=XLOC_003413|Name=XLOC_003413|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7744bp|location=Sequence derived from alignment at sc0000660_pilon:37844..45587+ (Clytia hemisphaerica_ch_hm2_pilon)
GGGAAGGCTACACAACGAATGCTAGATCTTCAATCGACGTCATTCTGTGT
CCCAATCTTGGAGAAGTCATCACCAATCGCCTACAGCATCGTCAACGACA
TCCATTGGAACCACATCACTGCTTCACATTCTGGTGTGGAGACCACTTGG
AGATATGTTCTTCAGAAAGTTTTCATCATCGAAGGAAGGAGCCTGGTCAA
GTCAATTCGATCAACTTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCA
TCGACGTATCAATGGGACCAGTATCACCTGACAACCTGATGATTGCTCCA
ATCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCATTTGAATCATACTC
GTATCACAACAAGAGGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCT
GTGCTACTACCACCACCATCAGCATCAAATGCATGGAGGATTACTCGACA
AACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTTGGGTATCC
ACGTCGACTGCTCACTGATGAGGGCAGCCAACTCGTCAAGGCTTGCGAAA
CActtcaaattgattttcaagACATCCAACGTCGTCTCTTCAAAGAATCC
AATGTCGATTTCAACACTTGTCCAGTTGGAGGCCACAATATGAATGGTCT
CGTAGAACGAAAAATTCGTGAAGTCAAGAAGTCCATCCAAAAATCAGTCT
CCAATCAACGACTATCAATCATGCAATGGGAGACATTCGCATCTCGAGCA
GCAAACAGCATCAATGATCTACCATTAGGCATTCGTGACTACGATGGAGA
CTTGCAATCATTGGATATCATCACACCAAATAGACTGAGACTTGGACGAA
ACAACGACAGAAGCCCAACCGGTGAATTCAGATTGTCAGGAAATTCATCA
AAGATCATTCTACAAAATCAAGCAATTTTCGATTCTTGGTTCGAGCTATG
GTTAACCTCACACGTCCCAGGACTTATCGCCAAGCCAAAGTGGTTCAAAT
CAGACACCAGCTTAAAGAAAGGTGACGTTGTTCTATTTACCAAGCAAGAT
TCACCGATACGTTCAAATTACCAGTTTGGAATGGTCGAATCCGTTGAAAT
CGATCGAGACGAGAAAGTTCGAAAAGTTAAGGTTCGTTATCAAAATGCTT
CAGAGAATACTCATCGTTTTACATTTCGTTCGGTTCGAAATCTTGTGGTG
ATTCATCGTGTGGATGAAACCTCTATGATGTTGTACCTTTATAATGCTAA
CCAATTTGCCACCTGTGGTGGGGCAGTGTAGGGTGAACTGCACcctaatt
CaattAgatttaattactttaacaaaacattcaaaatacaaaaagaactT
AACGTAGgacaattatatttttattgcaTCGCAAATGACTTGTACATATT
CCCTAGGCAATTATCGTAGGCAATTATCGCTagattatatcaatttttta
caatttcaatTCAACTCAATCATTCAATTCTGAAACTTACACAAGAAGGA
TGTATGTGGAAGATGTTGAGATGCGTTTTTAGATACAAGTTTTAGAGTTC
AATATTTCAAGTTCAATCTTTGTCAATCATTTCATGTACCTGTATTCACT
TGCCTTCAAATTGGCATGTGGCTATCCGGTACgtttgcctctttgtttgc
ctttgttgtctttctttgtttgctttgtgcctccttttCATGCACATTTA
GGTTGGGTCCGGTTTAGGTCTGGACATTAGGCTAGGTCATTTTTAGGCAT
GTTTTTTGTTAGTCAAATTTAAGTTCATTTATTGCATTcaattattgtca
ataatcaatttctctagtttattttctaattgtaatttttcaatcaattt
ttcagtttgaacataatcAACCAGTTCCAAACGGAAGCTGATTCCAATCT
TTGCTCAAATTCCCCAACAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCGCTATTCGATCTCAAGAAGAGTTTCATCTTAGA
CATCAATGATGAGCTTGCAGCCAGAGACATCGAAAAGAGTCGCGATTTCA
ATCGTTCTCGACTAAACATCAAAATCGAAAAGTTCTCCGGATACGACAGT
AAGATCGATTTCTTTACCTTCCGTACGAACTTTGAAAAGCTCCATCTGAA
GACAACACCAAAGCAATTCTTACCTGCGCTGTTAAAGAACAACTTCCTCA
CAGACCACGCCCTTAACTTAGTTCGCAATCTTGATGACATCGACATCATA
TGGGAGAGATTAAAAGGTGTCTATGGTAACCCAAAGATGATGCTATCCAA
GAGGCTTCTTCAACTTCAAACATTGGACGTCAGCAAATCAACGAAACCTG
AAAAAGCTATCGACAGTCTTACCAAAGTCATCAACGTGCTTCAAGATTTG
ATGAGATTAGCACAAGAACACAACATTGAAGAGTACCTATACTATGGTGA
AGGACTCAACACCATCTACCAGCTGATCGGTGATGTACAAACAACGAAAT
TCCTAGACACCATCTGTACCGACGACCTCGAGCAACAAGAAATCTGGTCA
AAACTCATATCCTTCCTGGACCATCAGAAGAGGATTCATCAACAAAGACT
TATGATCCAAGGACCAACACCAGATCCACCCAAGAGAGATCCTCCAAAGA
AAGACTCACCACCATTCAGACGAGGTCCATCATCACACCACACTGATGGT
CAACAGAATCGTCGTCCACCTgatcaactcaactgcttcatATGTCAAGC
CACAAATCATGTTGCAACCAATGGACCACAAGGAAGCAAGATCGTCCAAT
ACTTCGCATGTCCAGTATTCGTCAACATGACTCCTATCGAACGTTTCAAT
GCACTCAAATCCAAAGGACTCTGTTTCCAGTGCTTGTATCCTGGAGCCAA
GTACGACCAAGGGAAACATAAGGAGGGACGTTGCCAAAAGATCTTCTGCT
GCAAAGATACTCTCCATGACAAGTTTACTCACAAGAAACACGTGCTGGTT
TGTGACGAACATAAATTTACCCAGGAGAACAAAGATCTGTTTGACTTCTA
CAAATCAAGATGCATCAGCAAGATCCAACAGTTAGAAGCCTTCACCAAAG
ACATGCGTCTCACCTATCACTTCACCCCAGACGAACCAGAGCCCAATGAT
CATCAAGCCATCTACGTGTTGCAAACGATTGAAGTTGACCAACAGCAATT
CACTTTGTTCTACGACAATGGATGCAAGAATTCTGTCATCAAGTTTGATG
CAACCAAACGACTGGGTAGCAATCGAGCCAAACAGATCATCTCAAGACCA
ATTCCAGTTGGTGGCGTTGGAGGTGTCACAACACAATCAACACATGGAAT
CTATACCTTCTCGTTACCACTGGCAACCAACAATGGTGCAGAGATGACTG
GAGTTTGTCTCGACACACTCACTGCGACCTTTCCCTTCTATCCATTGCAA
GGAAAAGTGGAGAACGACATTCAGCACAGTTGGGAGGACTCTGGCCACGA
CATCAATCATCTTCCAAGACTGCCACCAATGGTTGGAGGAGACGTCGACG
TGATGATAGGTATACGTTATCTTCGTTTCTTTCCTAAATTCATCCACCAG
TTACCTTCTGGCTTGACCATCTACCAATCACAATTCAAGAACATCGATGG
ATCTTATGGGGTGATCGGTGGTCCCCATGAGGTATTCACAAGTATCGAAA
ATCATCATCACTCAACTTCGTCACAGTTTGTAGCAAGTCAACTGGAAGCA
GCAAAGTTCGGGTTCTACATTGATCCAGACATTCGATTACTTGGATCAGC
TACCTTCAGTGAGGTTCGACATGACTTGTATTTCACTAACAACCCAACTT
ACCAAATCAACAACGACGAATCTGAACCATCAACTTCATACATCACCAAT
CTTAATGAGAAGTTCGAATCAGTTGGTACAGACCTTAACTATCGCTGTGT
CAATTGTCGAAAGTGTTTAACCTGTAAGAACCATTCTACAGAAGATTCCA
TTAGCATCCAAGAGGAGGTCGAGCAAGACTTGATTAATCGCTCCATCACT
ATCGACCCATCCAATTGTTCATCGATTGCTAATCTTCCACTAATACACGA
CCCTCTGGTCAAACTGGCACCAAATCGAGACATTGCACTTCGCGTTTACA
TACAACAGCTTAAACGTTTGGAAAAGCATCAAGACGATAAGGACGACATC
CTCATCTCAGAGAAGAAACTGCAACACCTGGGATTCGTCGAATATGTCAA
GAATTTGCCCACTGACATCCAAAAGCAACTATCAGAATCTCAGATCAAGA
ATTTCATACCATGGAGGGCTGTATGGAAAGGCTCTTCTATATCGACACCG
TGCAGAATTGTCTTTGACGCTTCCATGCCGACATCGACTGGATTTTCACT
CAATGACGTTCTAGCAAAAGGAAGGAACTCAATGAACAAGCTACTCGAAA
TTTTTCTGAGGTGGAGAGGACATCGCATCGCATTTCATACTGACGTACAA
AAGATGTACAATTCCGTTAAGCTTAGAGAATCAGACTGGTGCCTTCAACG
TTACCTATGGCAAGAACACCTTGATCCAAGTCAACCACCAGAGGAGAAGG
TCATCATGACACTGATATATGGTGTCAAATCATCCGGAAATCAAGCCGAA
ACAGCACTTCGAGAAACCGTCAAAATACATCGCAAAGACGAACCAGAGGT
CGCTAGAGTCATCACTGAGGACGTTTACGTCGATGATTGCCTGTCTGGGG
GTGATCAAATCAGTACCATCAAACTTCTATGTCAATCAATCGATCAAATT
CTATCGTATGGTGGATTCACATTGAAAGGATTCACAATATCTGGAGAAGA
ACCGAAAGACTCTCTAACAGCCGATGGCACCACAATCTCAGTCGCTGGAA
TGAAGTGGCATCCAAAGAATGACCTCATATCCTTCGACATCAACCTTGAC
TTCGCCAAGAAATATCGCGGTAAGAAACTTGGTGAATGCAAAGAAGTACC
AAAACGACTCACCAGAAGAATCTGTTCATCAAAGGCTGCCGAGATTTTCG
ACATGACAGGACTGCTTACTCCTATCACAGCGACGTTCAAGCTGGACATT
CACGATCTCGTTCAACGCAAATTAGCATGGGATGACGAGTTACCAGCCAA
CCTTCGTGACATATGGATCAATCATTTCGACCTCATGGAGGAGATCAAGA
CGATCACATATCAACGAGCCATTGTTCCACAAGATGCAACATCACTGAAG
ATCGACACCCTCGACTTTGCTGATGCCAGTCCATCAATGATCTGTTCAGC
AATCTACGTTCGATTCCCAGTACCAGATGGCTATTCTTGTCAACTCATCT
TTGCTCGATCAAAGTTACTAAACGATACAACACAACCAAGAGGAGAGCTG
GCAGCTGCAGTTCTCAATGCCCACACAGGAGAGGTTGTTCGAAAAGCCTT
CAAGCAAGATCACATTGCACACAAGTTCACTGACAATCAAATTACACTCC
ATTGGATTTGCAACGAAAGTCGACCACTCAAGGAATGGGTTCGGAATCGG
GTTGTGGAAATCCTACGCTTCACCAACAAGGACAGCTGGAAGTACATCAA
ATCAACAGACATGATAGCTGACCTTGGTACAAGACGTAATTCATCACTAG
ATTTGATCAAACCAGATTCACCTTGGTACAACGGATATGCATGGATGAGG
AAACCATCATCAACGTTCCCCTCGCTGTCACCAGAAGACATCTCACTGGA
TCAATCTGAACTCCAACAAGCATCCAAAGAAGTACGTGCTGCTCAAGTGC
ATCACATCTCATCCAATCAAGACCAGCTTCAGAGGAGGTACGTATTTTCC
TCCTATCTTATCGATCCAAACAAGCACAAATTCAGTACAATCGTTCGTAT
TATGGCGCTAGTCTTCAAATTCATCAATATCATCTTCGATCCAAAAAGGA
AACAATCTATTTCTTCTCGTACACGATCAAAATGTACAAACACTTCACAA
AAAGCTTTAGTTATTTCAGATTCATTGCTTCGACGAGCAGAGCAATATTT
CTACAGGAAAGGAACATCAGAAGTCAAAGAGTTCGTATCATCATCAAAGT
ATTCAAATACCTCAATCGAAAAGGATAGAATTCTCACATACACAGGACGA
ATTCTACCAACTGATTCTGTTACCATCATTGGGAAGGCTACACAACGAAT
GCTAGATCTTCAATCGACGTCATTCTGTGTCCCAATCTTGGAGAAGTCAT
CACCAATCGCCTACAGCATCGTCAACGACATCCATTGGAACCACATCACT
GCTTCACATTCTGGTGTGGAGACCACTTGGAGATATGTTCTTCAGAAAGT
TTTCATCATCGAAGGAAGGAGTCTGGTCAAGTCAATTCGATCAACTTGTG
AAAGGTGTCGATACCTTCTCAAGAAAACCATCGACGTATCAATGGGACCA
GTATCACCTGACAACCTGATGATTGCTCCAATCTTCTACGTATCTCAAGT
CGATTTGTGTGGTCCATTTGAATCATACTCGTATCACAACAAGAGGGCCA
CTGTCAAGATCTGGTACGCCGTCTTCTGCTGTGCTACTACCACCACCATC
AGCATCAAATGCATGGAGGATTACTCGACAAACGCATTCCTACAAGCATT
CACTCGACTATCGTGCGAAGTTGGGTATCCACGTCGACTGCTCACTGATG
AGGGCAGCCAACTCGTCAAGGCTTGCGAAACActtcaaattgattttcaa
gACATCCAACGTCGTCTCTTCAAAGAATCCAATGTCGATTTCAACACTTG
TCCAGTTGGAGGCCACAATATGAATGGTCTCGTAGAACGAAAAATTCGTG
AAGTCAAGAAGTCCATCCAAAAATCAGTCTCCAATCAACGACTATCAATC
ATGCAATGGGAGACATTCGCATCTCGAGCAGCAAACAGCATCAATGATCT
ACCATTAGGCATTCGTGACTACGATGGAGACTTGCAATCATTGGATATCA
TCACACCAAATAGACTGAGACTTGGACGAAACAACGACAGAAGC

Coding sequence (CDS) from alignment at sc0000660_pilon:37844..45587+

>XLOC_003413 ID=XLOC_003413|Name=XLOC_003413|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1974bp|location=Sequence derived from alignment at sc0000660_pilon:37844..45587+ (Clytia hemisphaerica_ch_hm2_pilon)
GGGAAGGCTACACAACGAATGCTAGATCTTCAATCGACGTCATTCTGTGT
CCCAATCTTGGAGAAGTCATCACCAATCGCCTACAGCATCGTCAACGACA
TCCATTGGAACCACATCACTGCTTCACATTCTGGTGTGGAGACCACTTGG
AGATATGTTCTTCAGAAAGTTTTCATCATCGAAGGAAGGAGCCTGGTCAA
GTCAATTCGATCAACTTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCA
TCGACGTATCAATGGGACCAGTATCACCTGACAACCTGATGATTGCTCCA
ATCTTCTACGTATCTCAAGTCGATTTGTGTGGTCCATTTGAATCATACTC
GTATCACAACAAGAGGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCT
GTGCTACTACCACCACCATCAGCATCAAATGCATGGAGGATTACTCGACA
AACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTTGGGTATCC
ACGTCGACTGCTCACTGATGAGGGCAGCCAACTCGGGGAAGGCTACACAA
CGAATGCTAGATCTTCAATCGACGTCATTCTGTGTCCCAATCTTGGAGAA
GTCATCACCAATCGCCTACAGCATCGTCAACGACATCCATTGGAACCACA
TCACTGCTTCACATTCTGGTGTGGAGACCACTTGGAGATATGTTCTTCAG
AAAGTTTTCATCATCGAAGGAAGGAGCCTGGTCAAGTCAATTCGATCAAC
TTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCATCGACGTATCAATGG
GACCAGTATCACCTGACAACCTGATGATTGCTCCAATCTTCTACGTATCT
CAAGTCGATTTGTGTGGTCCATTTGAATCATACTCGTATCACAACAAGAG
GGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCTGTGCTACTACCACCA
CCATCAGCATCAAATGCATGGAGGATTACTCGACAAACGCATTCCTACAA
GCATTCACTCGACTATCGTGCGAAGTTGGGTATCCACGTCGACTGCTCAC
TGATGAGGGCAGCCAACTCGCCACCATCAGCATCAAATGCATGGAGGATT
ACTCGACAAACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAGTT
GGGTATCCACGTCGACTGCTCACTGATGAGGGCAGCCAACTCGTCAAGGC
TTGCGAAACActtcaaattgattttcaagACATCCAACGTCGTCTCTTCA
AAGAATCCAATGTCGATTTCAACACTTGTCCAGTTGGAGGCCACAATATG
AATGGTCTCGTAGAACGAAAAATTCGTGAAGTCAAGAAGTCCATCCAAAA
ATCAGTCTCCAATCAACGACTATCAATCATGCAATGGGAGACATTCGCAT
CTCGAGCAGCAAACAGCATCAATGATCTACCATTAGGCATTCGTGACTAC
GATGGAGACTTGCAATCATTGGATATCATCACACCAAATAGACTGAGACT
TGGACGAAACAACGACAGAAGCCCACCATCAGCATCAAATGCATGGAGGA
TTACTCGACAAACGCATTCCTACAAGCATTCACTCGACTATCGTGCGAAG
TTGGGTATCCACGTCGACTGCTCACTGATGAGGGCAGCCAACTCGTCAAG
GCTTGCGAAACActtcaaattgattttcaagACATCCAACGTCGTCTCTT
CAAAGAATCCAATGTCGATTTCAACACTTGTCCAGTTGGAGGCCACAATA
TGAATGGTCTCGTAGAACGAAAAATTCGTGAAGTCAAGAAGTCCATCCAA
AAATCAGTCTCCAATCAACGACTATCAATCATGCAATGGGAGACATTCGC
ATCTCGAGCAGCAAACAGCATCAATGATCTACCATTAGGCATTCGTGACT
ACGATGGAGACTTGCAATCATTGGATATCATCACACCAAATAGACTGAGA
CTTGGACGAAACAACGACAGAAGC

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_003413	XLOC_003413-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000660_pilon	genome	sc0000660_pilon:37844..45587 +

Properties


Property Name	Value
Aaloc	544-993:7295
Aaloc	7-540:1

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XLOC_003413 (mRNA) -