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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000221_pilon:460562..465756+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_002742 ID=XLOC_002742|Name=XLOC_002742|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5195bp|location=Sequence derived from alignment at sc0000221_pilon:460562..465756+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGgaagaaactttcaaaacacagACTTGGCACAAACCAATTTACAAC
ATTTGAATCAAGTCAAAGCAATGCTGCCAGTGGTGTTGGTGGTGCTAGTT
CTGGTGCTGGAGAACCTCCCAGTAGCTCTGGTTTGGCTTCACAAGGAGAA
GTGATCATCAACAGGGAATCCATTAGATCTCTGGCATTAATGAATGGATT
GTTGTACGTTGGAGATACAGAGGgtgtaagaacaattttttcccCTTAAT
AATATTGTTGAGGCTTTAGTTATACTCTACATTTTTTAGGTTTATTCCTA
TCAGCTCACAATAAGTATAACCTCCTTCTTATATTtccagattgtgaatg
ttttcgaTTTGGAGCAGAAGCAGCAAAAGGAGACGCTGAAAGTACACACA
AAAGCTGTCACAAGGGTAAGACATTGAGGGATACTAAAAGAGACATTATA
TAACAACCAAATATGCAAATGGTGTTGGCATGAGGTGTTTGGTAATATGT
CAGTTAATGCAACGACATTCAGACATTTCGCCGTCATTCCTTCTTGTGAA
ACTCGAACCCAGGTGAGTTTGGCCGTAGAACGCTCGAATTGTTGATAGGT
GTATTGagaatttgatgttttattaAATCATTTTGTTTTCACCTCAGATA
GTCGATGGGCCTGATGATTCGTATTTTACTGCTTCTCGCGACAAATCTGT
CTCAAAGAGAATGCTGGGTATCACAGATGGGGCGAAAATGGAAGGTCATA
GATTAGCAGTCACCGCCCTGGCTATGAAACCTGGTAAAATTCAACATTTG
AAAATCTAAATGTCAATGAAATTGAGTAATTATAATTCTAATTAAATTCT
TCCCCTCGAATAGTCTTACACTAAAAACATAGTTTGCCCAAACTGAAAAA
ATACaagataaagtttttttttctcaaggaaaatttcTCTATCAGAGCAA
TTCTTGCCGTATTTTCAATCACAATTATGCTTGTCAATTTAAggcgaaat
ttgattttttcagtgttttttttattggttttaGATTTGGCGAAAGTTAT
GTCAGGGAGTCGTGATGGAAATGTAACTATTTGGGACACAAATACCTGCC
TATTGGAACAACAAGAAGAAATTGCTAGAAATATAGTATGTGCCGATCTA
CCTAGATATTTGTGTTATTTTTGAGGCCGAATTGACTGATTCCCTGTCCA
ATATCCTGGCCATTATCCCGGCCATTTTCTTTCCTAGATTCAGAGAGGGG
CAGGCGTCATGGATTTCGAACAACCCAAACTCTCAATATTGCAATTTCAG
TCATATGGTGAGCTGAGTTCGTTGGTATGCAAGGGATATtataaaatcta
tgctgaataatgaaaaagattttcaatacattaaaacaattttttgatac
attaaaaaaataacaaattttaggTTACAGATATCGTTTGGTTTGATTCG
TCGCAAGCAATCCAGTGTGGAGAAGACAAAACTGTAAAGTATGTTAttgt
ttttcaacaaattttgtattaaaaagaaatttaaaatatcaaaacgtTCC
CTTATTTTTGACAGTAATTACCGTTGAGCGCTTTCTTTTCAGATGTGTAA
CTTAATTATAATAATGATGGATACTAAAATGCACTTTACTCTGCGAAATC
AGGAAGTGTTTATCttctatactaaatgagtttatgaaaaatgtctgtaa
cgctagcccagtaacatatgttaaggtttctaaaatttgaacgccacGGC
Tcgaaaacctatccaccttcgatacaaaaagtctcgcgctaagtttgaca
agcgtagaaaactcggattagagaagactctacactgctatttgtaaacg
aaaaaagttctgacgtcaatttcatgaaaaagtactgcgacgtcacaaag
tatcaaaaaaaaaggtgtggcatttttgttgcacgatttcgaattatttt
atatcaacacacgcaacaaaatccaacattgttgtttgatgattaaactt
cgtctaacattatttaaaaaggtttcaatgttggttgcattgcatatgcg
ccggtcttaagctgtcctcatgtgaagccaacaaacgggaaaaccttcag
taCTCAACCGCAAAGCGCGAGCATttccttcacaactaaggctttttctt
tcctagaagcaaccctctcaccacctcagacacctttgggcgtctgcaac
gacaGGTACCCTccataattttgacagggtcactatggcatttcattgaa
cacaaacttccgttaccttaaaaagacatataatcgaggcttacagacac
aaaatgTTGACTAATGtaaaaagtttagaagtataatttttttttattgt
atacggcattttaagccaaaacggtGTCAGGAATTAACGCACATTAtcgt
attttaaaggcttttgatgtgcaagcaaaaccgttaaccggcgtttgcga
cgacgggaaccgtctagtactTTTACTATAGAGAtttttttATGtttcgc
taagttacgtaactaccgcgccattatggaagcaaacgatCGATTTGCGT
ATGAAATCGCCTCTAAAAATCCGTATCATTGCTTTCATAATGGTGGAAGT
TACGTAGTTCCACAAGAAATTAAAAACGTCTAGAAAACTTCCCGGTTTCA
CAAAGTCAAACTTCTATAGTGTGAAATAATCCAGCTTATGAAACAAATCT
TTACATACAAGCATTTGGTCTTTCATTATCATTTAGGTTATGGGATTGCA
GAAGATTACACGTTGTTGACACATTTCCCATGAAGCAATATTTTCAGGTC
ACTTTTCAATCTTGTCAAACTAGTATATACTTGTTTGTTAGGCGTGGCTT
TAAAGCAAATTTTTACATAAGGTTTAATAACATTATATAAAGATTAATGA
CAGAATTGTACCTAGCTCTTCAAAATTCTAGTCAAAAGTGTTATATTATT
AAAGATTATAAGATAACCCTGTCTCTGTTGATAAGCTAATGAAATGCTTA
TACACTCTTTACTTTCTAGTCATGTTGCGCTGTGAATGATACTCAATTGG
TGACTGGAAGTGTTGGTGGCAATGGTAGAGGTTGTCACGTCACTGTGAGT
TAGTTCTAATTTAAACATTCCATGCACTCTTAACTACGCTTGACTTGATC
GGGCTTCCCATATCATAGGAAGTGTATTTAGTAATAAAGCTGACTCTAGC
TAGCTCGTGTTATTCTGTTTGTCAACAGTGGTagtcgaatgttttgaaat
tgaaacattcgaaagtttGACTTGACACGGCGGACTAGTCGACTTTATCT
GTAGGCATTTTaatgcaaaaatttaatttgtcgTCGTTCTACCGACTTTT
CCCGCTACTGTAAGAATGCTCGGCAAAGTATTTGTGATTCGTTCtaacga
ttttttttcaatggcGTTCAATATATTTCTTTAATCACCTAACCAGTTTC
acgacagctgattggttgcaagtggcATATtgattagagaaaaaaaaaca
agaaaatgttttttgtttatattctttgtttccgcctaaactgtatcttt
ttgtgtttttttttatgctACTTGCTTCACTTTTAGCTCTGGGATTTACG
AGAACGTAGAGAAATAGTCACCTTAAATGGGCATGAGCAAAGTTTATCAT
CTGTCGCTTATTTCACCAATCGAAACAATCAACTGAGGTATGAGAAGTTC
TAACCCAACAAtaacaattatttttcaacatattATACTTTATATCTGTG
caaccaattttttattttgattttagtacTCCTGTTTGCTGAGTACATAC
CTagtgattttcatattttggtcACCTTGAAGGAGTCGGTAAAACTTTGT
ATACAACCCTTACTTTTCAGGATAATTTCAATTGCTGATGATTGTTATGT
CAAAGTTTGGGATCCAGCGAGACAAGGTTTTCTTTCTTCCCTTGAATATA
attgagaaattatttttggacctaccccggtggggtggatgtcctataaa
ttaacctgtgcttgttcgtccgtccgtttgCGTCCGTCCAttcgtttgtc
tgttaccaacttttctcaggattgaatcatatgaatcttttaatttttgg
tacaaaggtgcaaaatggtggtagccaaaatgtgacggagcccgatttca
gcaaatttcagccaaaaaacagctaaaaaagggtttttaagacattgtga
aaaattggatcattattttttctgattttttgcatggaagtaggctaaca
tcattggtaaaagatggctgaagcagattttcacaaaataatttttttct
gagtgtttttgtccattgtcctaagaaattgggtgttttagagtctgtaa
agccttaaaatgttcttaacttgttcttaacattttggccatccaagcct
tatgctcttatacaattttttcttataaaaaacgtgtgagCCTTTTACTA
GCTTCGACCATATGACAATTTTGCAGCAAAGCAAGATAAAATTTGAACCG
AAAATTGATTTGTCAtgaatctttgtcaaatttgggtCCCAGTTTCATTA
CATTAATAGAAATACCAATAACTTGCTTCACAACAAAATCATCTTCAAAG
CGAAAGTGatatacattttgaaaatagaatatatcagaaaaatcaaaaat
caactatCCTTCcacttttttaatctttttatttaaatatctCACCTTTA
GAGTGCGCATGCTCATTTTATGTACCTGGAGCACAAGGATTGACCGCAAT
GATTCAATTATCTGAGGACAGGTTTGTCATGCttcaattttttcgaaaaa
gtacATCCGAAAAGGAGATACTCctaccccctccccctcccccacGTCTA
CAGCATGTCCaaaaaaaGTGGACATAAATACataaataaagattttcata
ccgGTTGTCAAAGAAAAAAGCCCCCTCTGCAATTTTCTCTGAAATATTTA
GAATGATAGCATCACATAGTTTTTGTTACAATTGAACACTGTGTTCCATT
CACAGCtttttttAAgtagaaaaataatctttaatttGATTTGTCTAGTC
AAGTTTGTGTTATTTTACTGCCGTAAATTACTGCTATGGATTTCTTTTTT
CCAGCTTTATAATTGGTTCAATTCAAGGCGCTTTATATGAAGTGAGATAC
AAATGTGATCCAACTGAGCAAATAGAAATAACTAGCACAATGTAA Coding sequence (CDS) from alignment at sc0000221_pilon:460562..465756+ >XLOC_002742 ID=XLOC_002742|Name=XLOC_002742|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2112bp|location=Sequence derived from alignment at sc0000221_pilon:460562..465756+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGgaagaaactttcaaaacacagACTTGGCACAAACCAATTTACAAC
ATTTGAATCAAGTCAAAGCAATGCTGCCAGTGGTGTTGGTGGTGCTAGTT
CTGGTGCTGGAGAACCTCCCAGTAGCTCTGGTTTGGCTTCACAAGGAGAA
GTGATCATCAACAGGGAATCCATTAGATCTCTGGCATTAATGAATGGATT
GTTGTACGTTGGAGATACAGAGGgtATGGGgaagaaactttcaaaacaca
gACTTGGCACAAACCAATTTACAACATTTGAATCAAGTCAAAGCAATGCT
GCCAGTGGTGTTGGTGGTGCTAGTTCTGGTGCTGGAGAACCTCCCAGTAG
CTCTGGTTTGGCTTCACAAGGAGAAGTGATCATCAACAGGGAATCCATTA
GATCTCTGGCATTAATGAATGGATTGTTGTACGTTGGAGATACAGAGGgt
attgtgaatgttttcgaTTTGGAGCAGAAGCAGCAAAAGGAGACGCTGAA
AGTACACACAAAAGCTGTCACAAGGattgtgaatgttttcgaTTTGGAGC
AGAAGCAGCAAAAGGAGACGCTGAAAGTACACACAAAAGCTGTCACAAGG
ATAGTCGATGGGCCTGATGATTCGTATTTTACTGCTTCTCGCGACAAATC
TGTCTCAAAGAGAATGCTGGGTATCACAGATGGGGCGAAAATGGAAGGTC
ATAGATTAGCAGTCACCGCCCTGGCTATGAAACCTGATAGTCGATGGGCC
TGATGATTCGTATTTTACTGCTTCTCGCGACAAATCTGTCTCAAAGAGAA
TGCTGGGTATCACAGATGGGGCGAAAATGGAAGGTCATAGATTAGCAGTC
ACCGCCCTGGCTATGAAACCTGATTTGGCGAAAGTTATGTCAGGGAGTCG
TGATGGAAATGTAACTATTTGGGACACAAATACCTGCCTATTGGAACAAC
AAGAAGAAATTGCTAGAAATATAATTTGGCGAAAGTTATGTCAGGGAGTC
GTGATGGAAATGTAACTATTTGGGACACAAATACCTGCCTATTGGAACAA
CAAGAAGAAATTGCTAGAAATATAgTTACAGATATCGTTTGGTTTGATTC
GTCGCAAGCAATCCAGTGTGGAGAAGACAAAACTGTAAAgTTACAGATAT
CGTTTGGTTTGATTCGTCGCAAGCAATCCAGTGTGGAGAAGACAAAACTG
TAAAGTTATGGGATTGCAGAAGATTACACGTTGTTGACACATTTCCCATG
AAGCAATATTTTCAGGTTATGGGATTGCAGAAGATTACACGTTGTTGACA
CATTTCCCATGAAGCAATATTTTCAGTCATGTTGCGCTGTGAATGATACT
CAATTGGTGACTGGAAGTGTTGGTGGCAATGGTAGAGGTTGTCACGTCAC
TTCATGTTGCGCTGTGAATGATACTCAATTGGTGACTGGAAGTGTTGGTG
GCAATGGTAGAGGTTGTCACGTCACTCTCTGGGATTTACGAGAACGTAGA
GAAATAGTCACCTTAAATGGGCATGAGCAAAGTTTATCATCTGTCGCTTA
TTTCACCAATCGAAACAATCAACTGAGCTCTGGGATTTACGAGAACGTAG
AGAAATAGTCACCTTAAATGGGCATGAGCAAAGTTTATCATCTGTCGCTT
ATTTCACCAATCGAAACAATCAACTGAGGATAATTTCAATTGCTGATGAT
TGTTATGTCAAAGTTTGGGATCCAGCGAGACAAGGATAATTTCAATTGCT
GATGATTGTTATGTCAAAGTTTGGGATCCAGCGAGACAAGAGTGCGCATG
CTCATTTTATGTACCTGGAGCACAAGGATTGACCGCAATGATTCAATTAT
CTGAGGACAGAGTGCGCATGCTCATTTTATGTACCTGGAGCACAAGGATT
GACCGCAATGATTCAATTATCTGAGGACAGCTTTATAATTGGTTCAATTC
AAGGCGCTTTATATGAAGTGAGATACAAATGTGATCCAACTGAGCAAATA
GAAATAACTAGCACAATGTAACTTTATAATTGGTTCAATTCAAGGCGCTT
TATATGAAGTGAGATACAAATGTGATCCAACTGAGCAAATAGAAATAACT
AGCACAATGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000221_pilon | genome | sc0000221_pilon:460562..465756 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 967-1056:5106 |
| Aaloc | 898-963:4704 |
| Aaloc | 841-894:3872 |
| Aaloc | 739-837:3587 |
| Aaloc | 664-738:3020 |
| Aaloc | 604-663:2738 |
| Aaloc | 538-600:1424 |
| Aaloc | 439-537:1037 |
| Aaloc | 301-435:648 |
| Aaloc | 226-300:341 |
| Aaloc | 1-225:1 |
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