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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000058_pilon:116606..122303- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_002642 ID=XLOC_002642|Name=XLOC_002642|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5698bp|location=Sequence derived from alignment at sc0000058_pilon:116606..122303- (Clytia hemisphaerica_ch_hm2_pilon)
TCTGCTCCACTGTATGTAGACATAACAAAGACTGTCACTAAAGCTGGCCA
TGACCCAGAATCTGAGGAACATGGAAAAGTTTACATTGGAAAAATCCCTA
TCATGTTGAGATCATCCTTTTGCGTACTCAAAGGGCAAACTGATCGTGAT
TTGTGTGAATTGAACGAATGTCCATTGGATCCTGGTGGTTATTTCGTTAT
TAATGGTTCAGAAAAAGTTTTGATTGCCCAAGAAAAGATGGCTACTAATA
CAGTCTACGTTTTTCAAAAGAAAGATTCCAAATATGCTTATACATGTGAA
ATTAGGTCTTGCCTAGAACAATCTTCACGTCCAACTAGTACAATGTTTAT
TTCAATGCTGGCAAGAGGTGGTGGTGGTGCCAAGAAGGGTTCAATTGGAC
AAAGAATTATTGCAACAATTCCATACATTCGACAGGAGATTCCTATCATG
ATTGTGTTCCGTGCACTTGGGTTTGTGTCTGATCGTGATATTTTGGAACA
TATCATTTACGATTTTAACGATACCGAAATGATGGAAATGGTGAGTTAAT
TTTCACAATTGAATTATTCTGTTTATGCAAGAAATGAGTCTTTGCTTGAA
GTTTCATGTCGTCATTCCATAGACGATTTGTGTTTCATGCGTGCTTGGGG
ATTAAGTAAGTTCCCCTGTCACTCACCCCCTGAGATCCGAGTTGCAGTTC
CTCAAGAACAAGAATCTTCTTTTTTTTTTAGGTCAAACCATCTTTAGATG
AAGCCTTTGTTGTCCAAGAACAAAACGTGGCTTTGAACTTTATTGGTACT
CGTGGTGCAAGACCTGGCGTCACCAAGGAAAAGAGAATCAAATATGCAAG
AGAAATTTTACAGAAGGAAATGTTACCCCACGTTGGTACAAGTGATTTCT
GTGAAACCAAGAAAGCTTACTTTTTAGGGTAAATCTCTAAAACTAATTAT
TATGTTATCCATTTTGTATCTAAGATTAAGAAACTCAAGAATATTAGCCA
GGGAGCCACTTAAAGCTTTTTGATAGACTGGATGACGCTGAAAAGTGACA
AGGGTAGTCCGGTGTAGTCCGGTGTAATTTGGCAGACTGCATTTTTTAGC
TTTGCCTGAGCACGTAACAAATCCATTACAATATTCAGTCCCATTTGGGA
GAAAAATAAACAGAAAACTGAGACCAATAGACCATTTTCTCAAATTTTAG
AGGTATTTTTGTGATTTTACTATAGTTTCATAAACTGATGGGATTTTAGA
AAACATTTCATTGTGTTAGTGTTTTTATATAAATTTTGAAAACGAAAGCG
AAAAATTCCAAGTTCAGCAAAAGGAAAGCAAAGTTCAGTTAGAAGCAGAC
TCTTAGTCTACTAAAATATTTGAAAGACCACCTTTATTCATGTAATAAAA
TAATTACTTCCTCTCTTCTCAATAGTGATAAGGGAAATAAGAGATACAAA
CAATAACCTTTTGCTCTATTCCTTCTAGATATATGGTGCATCGTATTTTA
TTAGCAGCTTTAGGGCGTCGTGAGTTAGATGATCGTGATCACTATGGTAA
CAAACGTTTAGACTTAGCTGGTCCTCTGCTTGCTTTCCTTTTCAGAGGGT
AGGTTATTGTTCTTTTTTATATGATGGTGATAGAGTTGAAATAATCTATT
TAAAAAGAGCTGCGCAGTGAAATGCTCTTCTCTGGCATTCCATGTGAGAA
TCTGAGAAGAAAAATAACTTTATCAAAGTTTACAGAGATAACCTTTTTTG
AATTTTTGAAATTATTTCATATTGGCATTTTTACCTGCATATTTGTTTAA
CAATATTCTTACTATTCTTAGATTATTCAAGAATCTTATGAAAGAAGTTC
GGTTGTATGCTCAAAAGTTCATCGACAAAGGAAAAGACTTTCGCATGGAT
CTGGCTATTAAAACAAAAACCATTACAGATGGTTTGAGGTATTCACTTGC
CACTGGAAACTGGGGTGATCAAAAGAAAGCTCACCAGGCTCGCGCTGGTG
TATCCCAGGTCTTAAACAGATTGACCTTTGCTTCAACCCTGTCACATTTG
AGAAGATTGAATTCACCCATTGGAAGAGATGGTAAACTGGCTAAGCCACG
TCAGTTGCATAACAGTCATTGGGGTATGATTTGCCCTGCTGAAACACCCG
AGGGCCATGCTGTCGGTCTTGTCAAAAACCTTGCTCTAATGGCGTATATA
TCCGTCGGTTCTCAACCAAGTCCTATCCTTGAATTCTTGGAAGAGTGGGC
TATGGAGAACTTGGAAGAAATCTCACCTTCAGCTATTAAAGATTCTACCA
AAATCTTTGTCAATGGTTGTTGGGTAGGTATTCATCGTGACCCTGAGCAG
CTTATCATAACATTGCGTCGTTTGAGAAGACAGATGGACATTATTGTCTC
TGAAGTTTCTATGGTGCGTGATATTCGTGACAAAGAAATTCGAATTTACA
CCGATGCTGGACGTGTGTGTAGACCCTTATTGATTGTGGAGAATCAAAAG
TTGCTGTTGAAGAAGAGCCATATTGAGCAATTGAAAGAAAGAGAATACAA
TGATTTTGGGTAAGTACTGATTGTAGCACAAAATTTTTATTTTGAAAGAA
ATAGCACATATATATTGCCTTGTTCTTTGGTGGAAATTTCGTAATTTTTT
TGTGATTGAAAGTACATAGGACAAGACACTCGAAATTAGTAAAAAAGGGT
TTAAAAAGAATCAACTCTTAGGGTACTTTGCAAACAACTTCTTCATATTT
TTCCAGATGGGCTGATTTAGTCGGTAAAGGTGTGGTAGAATACGTGGACG
TCAACGAAGAAGAAACATCCATGATTGCTATGTCCATTGAAAACATCTCT
TTTGAAGACCAGTATTCCGATACATACACACATTGTGAAATTCATCCATC
CATGATCTTGGGCGTATGTGCGTCCATTATCCCTTTCCCTGATCACAACC
AGGTACGTTTATACCATATCCTTTCATAAAGGCCTGTTTCCATCGATTGC
GTGAGCGTGCACGCTAGATCAAAATTTCTTGAGCGGACGGGAGCGCACAT
CTCAATTGATAATTTTTAACCCAATCAAGAAAAAGAAAAGCTGCTGAATA
AACAAAAAAATAAATATACATATTGTGTTCGAGTCCACCTCTTTCTTGAT
GGAAATCAAAGATTTATCGCGCGTAGTCTGTGGACAAATCTATTTAAGGA
TTTTGATCTAGACAAATCTATTTAAGAATTTTGATCTAGCTTGTTGTCAC
TCGCGGGATCACTGGAAACAGGTTTTAATACACAGGTTTTTATTCAGTTC
TCTGTCTTGATTCTGTGTAATTTGTATGGAAAAAATATCGAACATCATAT
AGAAGTACCGATTAATATATTAAAAATCTGGTCTATCCTTACTTTTTCAG
TCTCCACGTAATACCTACCAATCTGCTATGGGTAAACAAGCCATGGGTGT
GTACATCACCAACTTTCACGTTCGTATGGATACATTAGCGCACGTCCTCT
ACTATCCACAAAAACCACTGGTCACTACAAGATCAATGGACTTCTTGAAG
TTCAGAGAGTTGCCTGCTGGTGAGTGGATGCTGGATTAATAAATTACGAG
AAGGAGAGTGATTATAGATGGATCGATAGTTTTCATTCTTTAAATTTCTT
ATTATGCTAAATGCCTTTTAATTAATCAGTATTACAACCTTTCCGTCTCT
AAGACCAGAGTCCGTCCAGTTAAAATAAAAACACACAATTTCCGTCTTAC
CAGTGAGAGAGTTTTTGGTGAAATGACCCACAAAACCAAAGATTGGCTCC
GATTTTCGTCCAGACTCATGAAGCCTACTTGTAGAACGGTTTAATCTATA
TCAAGGACAATCTCTACTTTTCTAACCTCGTCCAATACATCATAGTTAGC
TACAACACTATAATAATCTTACTTCACTTCAAATTTTAGGTATCAATTCT
GTGGTAGCAATTGCCTCTTATACGGGTTACAACCAAGAAGATTCTGTTCT
CATGAACTTCTCAGCTATCAATCGTGGTCTCTACAGGTAAACTAATTAAA
GTGTTGTTCTTGCATTACCCATGCCTTACAAACGCTCCGTCATTTCCCGT
TTAGCACATGTTTCTCAAACTCATTTTAGTTTCTTTTGTCTCGATGTCTC
AGCTTATATGTCTATCAACGTTATGCACCAAAAGTTGCATGGATGGAACA
AGTTTTGAGAAGTGCGACTGGAGGTTACGGTGACGCCCTTACAAATACAA
ATAACGGATGTTTAAGAAATACCCTAAGATTGAAATAGCGACTTTCAACT
AAAACTACACGTTTCTTTGTTTTAAGAAACTAGTTTTACCAAGCAGCCTC
AATGTTTCTTAAGAAATCGGCCTTTGGAGCCTTAATTAAATGTTTTTTAT
ATGTTTCTAAACTTTGTGACATAATCAGCCTATTTTTCATGCAAAGAAAA
AAAAACAAATTAAAAAATGTTATTTTCTCGGCCTCAAGCATGTTTCTTAG
ATGTTTCTTTGGTTTTAGGCATTAAGAGCCTCGTGTTTCTTAAAAAAAAA
AACGTGTATTGTCTTCAAAACATTCCAGTAAAACCTTTTCGATGCCTTTC
CTGGAAGTTTCATCAATATATTGGCGCATTCAGTCCCGACGAGACACGAA
CCCAGTAAATCCACCTTGTAAATTTAGAGGGTTATATTATAAATTCAATG
TTGTAAATTTTCATTTTGCAGATCTGTATTTTACCGTTCATATCGTGACG
AAGAATCAAGGAAAGGATTGGACCAAGAAGAAAGATTCGAAAAGCCACGC
AGAGACGAAACTGCAGGTAAAACATTGAAGATTAGTCCCACTAGAAGTGA
TGCAAAAATTTCACTATCGTTCATTATCCGACTATGGATATTTTCTCTAC
ACCAGCGCGTGCGCCAAATGTAAACTTTTTAATAAACTTGAGACAGACTG
CTCGTATCAGTCGGAACTAGACTTTATATTCTTTCTCTTCTTAAAAAAAA
CGTTTCTTTTATGTTAGGTATGCGAAACGCTATTTATGATAAACTGGATG
AAGACGGCCTCATAGCGCCAGGTTCCCGTGTCTCCGGTGAAGATGTCATT
ATTGGTAAAACATGTACATTACCGGAAGACGAAGACGAACTGGACTCACA
GACCAGGCATTACACCAAACGTGATGCTGTAGCACTTTCTTGAGAGCCAG
TGAAACTGGTATTGTCGATCAAGTCATGTTGACCATCAATGAAGAAGGGT
ACAAGTTTTGCAAAATCAAAGTAAGTTTCTATAGACCTTATCGGAGATTT
AGATTTTTCTAAAACAGCGATGCATTGTGGGATTGTTTCGGGGGTATTAC
AATAGAATTCCCTCGAGGAATTCCGAAGAAATTTCTATTGTAATACCCCT
TTCATTTGTTCATTTGAGGATAGACTTACTTTCCTCAAGCTTACCAAGCT
TTTTCTTTAACGAGGTAAAAAGCAAGTAAAACTCGATGCTGTCTACAGGC
TGGGCTCTCATAACCGGACCTTTATCTGTGGTGATGAAATTTAAAGGAAT
TTTGTGACACAATGAAAGACTCACTAACGACGATTTAGAGTTCATAGATT
CTAACCTTTTTCTTTAGGTGCGTTCCGTACGAACTCCACAGATTGGTGAC
AAATTTGCTAGTCGTCACGGCCAGAAGGGTACCTGTGGTATCACTTAT Coding sequence (CDS) from alignment at sc0000058_pilon:116606..122303- >XLOC_002642 ID=XLOC_002642|Name=XLOC_002642|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4972bp|location=Sequence derived from alignment at sc0000058_pilon:116606..122303- (Clytia hemisphaerica_ch_hm2_pilon)
TCTGCTCCACTGTATGTAGACATAACAAAGACTGTCACTAAAGCTGGCCA
TGACCCAGAATCTGAGGAACATGGAAAAGTTTACATTGGAAAAATCCCTA
TCATGTTGAGATCATCCTTTTGCGTACTCAAAGGGCAAACTGATCGTGAT
TTGTGTGAATTGAACGAATGTCCATTGGATCCTGGTGGTTATTTCGTTAT
TAATGGTTCAGAAAAAGTTTTGATTGCCCAAGAAAAGATGGCTACTAATA
CAGTCTACGTTTTTCAAAAGAAAGATTCCAAATATGCTTATACATGTGAA
ATTAGGTCTTGCCTAGAACAATCTTCACGTCCAACTAGTACAATGTTTAT
TTCAATGCTGGCAAGAGGTGGTGGTGGTGCCAAGAAGGGTTCAATTGGAC
AAAGAATTATTGCAACAATTCCATACATTCGACAGGAGATTCCTATCATG
ATTGTGTTCCGTGCACTTGGGTTTGTGTCTGATCGTGATATTTTGGAACA
TATCATTTACGATTTTAACGATACCGAAATGATGGAAATGTCTGCTCCAC
TGTATGTAGACATAACAAAGACTGTCACTAAAGCTGGCCATGACCCAGAA
TCTGAGGAACATGGAAAAGTTTACATTGGAAAAATCCCTATCATGTTGAG
ATCATCCTTTTGCGTACTCAAAGGGCAAACTGATCGTGATTTGTGTGAAT
TGAACGAATGTCCATTGGATCCTGGTGGTTATTTCGTTATTAATGGTTCA
GAAAAAGTTTTGATTGCCCAAGAAAAGATGGCTACTAATACAGTCTACGT
TTTTCAAAAGAAAGATTCCAAATATGCTTATACATGTGAAATTAGGTCTT
GCCTAGAACAATCTTCACGTCCAACTAGTACAATGTTTATTTCAATGCTG
GCAAGAGGTGGTGGTGGTGCCAAGAAGGGTTCAATTGGACAAAGAATTAT
TGCAACAATTCCATACATTCGACAGGAGATTCCTATCATGATTGTGTTCC
GTGCACTTGGGTTTGTGTCTGATCGTGATATTTTGGAACATATCATTTAC
GATTTTAACGATACCGAAATGATGGAAATGGTCAAACCATCTTTAGATGA
AGCCTTTGTTGTCCAAGAACAAAACGTGGCTTTGAACTTTATTGGTACTC
GTGGTGCAAGACCTGGCGTCACCAAGGAAAAGAGAATCAAATATGCAAGA
GAAATTTTACAGAAGGAAATGTTACCCCACGTTGGTACAAGTGATTTCTG
TGAAACCAAGAAAGCTTACTTTTTAGGGTCAAACCATCTTTAGATGAAGC
CTTTGTTGTCCAAGAACAAAACGTGGCTTTGAACTTTATTGGTACTCGTG
GTGCAAGACCTGGCGTCACCAAGGAAAAGAGAATCAAATATGCAAGAGAA
ATTTTACAGAAGGAAATGTTACCCCACGTTGGTACAAGTGATTTCTGTGA
AACCAAGAAAGCTTACTTTTTAGGATATATGGTGCATCGTATTTTATTAG
CAGCTTTAGGGCGTCGTGAGTTAGATGATCGTGATCACTATGGTAACAAA
CGTTTAGACTTAGCTGGTCCTCTGCTTGCTTTCCTTTTCAGAGGATATAT
GGTGCATCGTATTTTATTAGCAGCTTTAGGGCGTCGTGAGTTAGATGATC
GTGATCACTATGGTAACAAACGTTTAGACTTAGCTGGTCCTCTGCTTGCT
TTCCTTTTCAGAGGATTATTCAAGAATCTTATGAAAGAAGTTCGGTTGTA
TGCTCAAAAGTTCATCGACAAAGGAAAAGACTTTCGCATGGATCTGGCTA
TTAAAACAAAAACCATTACAGATGGTTTGAGGTATTCACTTGCCACTGGA
AACTGGGGTGATCAAAAGAAAGCTCACCAGGCTCGCGCTGGTGTATCCCA
GGTCTTAAACAGATTGACCTTTGCTTCAACCCTGTCACATTTGAGAAGAT
TGAATTCACCCATTGGAAGAGATGGTAAACTGGCTAAGCCACGTCAGTTG
CATAACAGTCATTGGGGTATGATTTGCCCTGCTGAAACACCCGAGGGCCA
TGCTGTCGGTCTTGTCAAAAACCTTGCTCTAATGGCGTATATATCCGTCG
GTTCTCAACCAAGTCCTATCCTTGAATTCTTGGAAGAGTGGGCTATGGAG
AACTTGGAAGAAATCTCACCTTCAGCTATTAAAGATTCTACCAAAATCTT
TGTCAATGGTTGTTGGGTAGGTATTCATCGTGACCCTGAGCAGCTTATCA
TAACATTGCGTCGTTTGAGAAGACAGATGGACATTATTGTCTCTGAAGTT
TCTATGGTGCGTGATATTCGTGACAAAGAAATTCGAATTTACACCGATGC
TGGACGTGTGTGTAGACCCTTATTGATTGTGGAGAATCAAAAGTTGCTGT
TGAAGAAGAGCCATATTGAGCAATTGAAAGAAAGAGAATACAATGATTTT
GGATTATTCAAGAATCTTATGAAAGAAGTTCGGTTGTATGCTCAAAAGTT
CATCGACAAAGGAAAAGACTTTCGCATGGATCTGGCTATTAAAACAAAAA
CCATTACAGATGGTTTGAGGTATTCACTTGCCACTGGAAACTGGGGTGAT
CAAAAGAAAGCTCACCAGGCTCGCGCTGGTGTATCCCAGGTCTTAAACAG
ATTGACCTTTGCTTCAACCCTGTCACATTTGAGAAGATTGAATTCACCCA
TTGGAAGAGATGGTAAACTGGCTAAGCCACGTCAGTTGCATAACAGTCAT
TGGGGTATGATTTGCCCTGCTGAAACACCCGAGGGCCATGCTGTCGGTCT
TGTCAAAAACCTTGCTCTAATGGCGTATATATCCGTCGGTTCTCAACCAA
GTCCTATCCTTGAATTCTTGGAAGAGTGGGCTATGGAGAACTTGGAAGAA
ATCTCACCTTCAGCTATTAAAGATTCTACCAAAATCTTTGTCAATGGTTG
TTGGGTAGGTATTCATCGTGACCCTGAGCAGCTTATCATAACATTGCGTC
GTTTGAGAAGACAGATGGACATTATTGTCTCTGAAGTTTCTATGGTGCGT
GATATTCGTGACAAAGAAATTCGAATTTACACCGATGCTGGACGTGTGTG
TAGACCCTTATTGATTGTGGAGAATCAAAAGTTGCTGTTGAAGAAGAGCC
ATATTGAGCAATTGAAAGAAAGAGAATACAATGATTTTGGATGGGCTGAT
TTAGTCGGTAAAGGTGTGGTAGAATACGTGGACGTCAACGAAGAAGAAAC
ATCCATGATTGCTATGTCCATTGAAAACATCTCTTTTGAAGACCAGTATT
CCGATACATACACACATTGTGAAATTCATCCATCCATGATCTTGGGCGTA
TGTGCGTCCATTATCCCTTTCCCTGATCACAACCAGATGGGCTGATTTAG
TCGGTAAAGGTGTGGTAGAATACGTGGACGTCAACGAAGAAGAAACATCC
ATGATTGCTATGTCCATTGAAAACATCTCTTTTGAAGACCAGTATTCCGA
TACATACACACATTGTGAAATTCATCCATCCATGATCTTGGGCGTATGTG
CGTCCATTATCCCTTTCCCTGATCACAACCAGTCTCCACGTAATACCTAC
CAATCTGCTATGGGTAAACAAGCCATGGGTGTGTACATCACCAACTTTCA
CGTTCGTATGGATACATTAGCGCACGTCCTCTACTATCCACAAAAACCAC
TGGTCACTACAAGATCAATGGACTTCTTGAAGTTCAGAGAGTTGCCTGCT
GTCTCCACGTAATACCTACCAATCTGCTATGGGTAAACAAGCCATGGGTG
TGTACATCACCAACTTTCACGTTCGTATGGATACATTAGCGCACGTCCTC
TACTATCCACAAAAACCACTGGTCACTACAAGATCAATGGACTTCTTGAA
GTTCAGAGAGTTGCCTGCTGGTATCAATTCTGTGGTAGCAATTGCCTCTT
ATACGGGTTACAACCAAGAAGATTCTGTTCTCATGAACTTCTCAGCTATC
AATCGTGGTCTCTACAGGTATCAATTCTGTGGTAGCAATTGCCTCTTATA
CGGGTTACAACCAAGAAGATTCTGTTCTCATGAACTTCTCAGCTATCAAT
CGTGGTCTCTACAGATCTGTATTTTACCGTTCATATCGTGACGAAGAATC
AAGGAAAGGATTGGACCAAGAAGAAAGATTCGAAAAGCCACGCAGAGACG
AAACTGCAGATCTGTATTTTACCGTTCATATCGTGACGAAGAATCAAGGA
AAGGATTGGACCAAGAAGAAAGATTCGAAAAGCCACGCAGAGACGAAACT
GCAGGTATGCGAAACGCTATTTATGATAAACTGGATGAAGACGGCCTCAT
AGCGCCAGGTTCCCGTGTCTCCGGTGAAGATGTCATTATTGGTAAAACAT
GTACATTACCGGAAGACGAAGACGAACTGGACTCACAGACCAGGCATTAC
ACCAAACGTGATGCTGTAGCACTTTCTTGAGAGCCAGTGAAACTGGTATT
GTCGATCAAGTCATGTTGACCATCAATGAAGAAGGGTACAAGTTTTGCAA
AATCAAAGTATGCGAAACGCTATTTATGATAAACTGGATGAAGACGGCCT
CATAGCGCCAGGTTCCCGTGTCTCCGGTGAAGATGTCATTATTGGTAAAA
CATGTACATTACCGGAAGACGAAGACGAACTGGACTCACAGACCAGGCAT
TACACCAAACGTGATGCTGTAGCACTTTCTTGAGAGCCAGTGAAACTGGT
ATTGTCGATCAAGTCATGTTGACCATCAATGAAGAAGGGTACAAGTTTTG
CAAAATCAAAGTGCGTTCCGTACGAACTCCACAGATTGGTGACAAATTTG
CTAGTCGTCACGGCCAGAAGGGTACCTGTGGTATCACTTATGTGCGTTCC
GTACGAACTCCACAGATTGGTGACAAATTTGCTAGTCGTCACGGCCAGAA
GGGTACCTGTGGTATCACTTAT
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000058_pilon | genome | sc0000058_pilon:116606..122303 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 2404-2484:82 |
| Aaloc | 2314-2403:519 |
| Aaloc | 2155-2313:680 |
| Aaloc | 2059-2151:977 |
| Aaloc | 1963-2055:1758 |
| Aaloc | 1792-1959:2299 |
| Aaloc | 1597-1791:2942 |
| Aaloc | 859-1593:3877 |
| Aaloc | 739-855:4220 |
| Aaloc | 541-735:4968 |
| Aaloc | 1-540:5699 |
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