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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000273_pilon:246536..251465+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_002116 ID=XLOC_002116|Name=XLOC_002116|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4930bp|location=Sequence derived from alignment at sc0000273_pilon:246536..251465+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTTCAGATAAGGTTTGCATTCTCACTGATCAAGACGAATTAAGTGA
AGAGAATCTGGAGGATGATCAGAACTTTGGAATTTCATTCTCCAACAGTA
CACTGGTGATGGAAAATGACAACCAGGAcgaaaaatcaccaaaaattgaa
aaccaaCAGGAGAATCGGTTTCAAGAATCAAGAAGAGAGCAATCTGAAAG
CATGTCTCTGAATGAGTCAGAAAGTAATTCATCCGAAAGCAACCCTAGTG
AGGACTCAAGTTATAAACCAACAAAGAAGAATCGATCCAAAAGCAATCCC
ACTGAAGATTCTACCTTTGCAAAAAGAGTCAAAAATCGATCAAAAAGCGA
CCCATCTAGGACATCTATCTCGTCGTTAGGATCAATCAACTTTACTGGAT
CCTCAGTGATTTCGCCAGTGATCGAATCTGCCAACAATTCAACCGAAGAC
GAAAACAGAGACTTCGAGATTGTGAGAATTCCTGCTGAGAATGAAATGGA
GATTATGAAGAACAACAATGATCCACAAAATGAAGACCAGATCTTGGAGA
ATATCAATATTTATAAATCATGGTGGAAATACCCGTTAATTTTTTCAGGA
CTCTTAGGATCACAGCCTGCTCCTCGAGAAAAGAAATCCAAAAGATATTG
TAGCACATTATGCTTTAGGCGTCTCCTTATATTcgttttatttctatttc
ttctgGTCCTGAAATTTGATGGATTATTCCAAATGAGTTGGATACTACTT
GAATCAAAGTTTCCGTTCACCGTTATCAATAATGTGGTCTGGGAGCTGCG
ATGGATTTTAACGTTCTTTCTCTGCATGCTTTTTATGGATAAAGGTGGAT
TTCATAATTTCTTGAGTCATGTAGAAATCTCACGaaaaaaaTGGTATGAA
AATGCAAGAAAGATGCGGACCTACATCGGTGTTGTTTTTGTAAGTATTAT
AATTTGTACCCATTTCCTTTTGTTCCCATTTTAAGATCATTGTACTCATA
AGAGATTTGGCCATCAGCATTACTTTGATATACATGGAGAGCCATGTCTT
AaatagcctgttagacgaaaagtTTCGATAAGTCATCTTTCGTGGGACGC
gatttctacaaaaaaataCACGTAGCACACAGTCTTGAAATTTCGTTACA
TCTAAGACCTTTTCAATTCCAGGTCATCACAGTTTTCGCCCCACCGATGT
TTGTTTTCTTGGATCAGAATTGGTTAAATATTGCCAGTCTTGCAAAACCG
GATATGTGGAAGAAGATATTGATGGCCGTTCTGGTGTTCTTGTATCGTTT
GATCATGACGCCGAGTTTTTGTGTTTTATCAGCCGTTTTGTATCTGTTGG
GTGATCATATAAGGATGACTGGGAAAcgaatttcccaacaaaaaacAGGT
TTGTGAATCTACTTTCTCATGATGATTTCACCAAAGTTTGATCGACTTTT
AAAACAATAATATTCTTTATTCTATAAAGTGCAGCGTTTTGTAAAAAATT
ACTGAGGAATTCTTGTTTTACCATAGTGCCTAAAAGCTACACCCAGCAAA
TTCTAAAACTTCTACTATCTAAATGGAATTGCACACTAGTGAAGGTAGTA
GAAAATAGGCCTGTGACTGGAGGACCTTAAAATTATGTAAAGACATCATT
ACACAGACTTTCTTTCAATCTCTCTCCACTCGTAGCAAACGATGCACATG
ATCTGGTCCGTAAAATGCGAAAGTTGATCACAGAGACTGAGCACTCCCTA
CAAATTAACATTGTGGTTCATATGTTTCTTGTGTTTTGTGTCTCCTTCAC
CACAGCTATGTCTACGTTAGAAAGGTCAGTATTACATCTCTGTAACATAG
TATTACATCTCTGTAACATAGTATTACACTTCTGTAACATAGTATTACAT
CTCTGTAACATAGTATTACATCTCTGTAACATAGCAATACACTTCTGTAA
CATAGTATTACATCTCTGTAACATAGTATTACATCTCTGTAACATAGTAT
TACACCTCTGTAACATAGTATTACATTCTGTAACATAGTAGTATTTACAT
CTCTGTAAACATGTAAGTACACTCTCTGTAACATAGTATTACACTTCTGT
AACATAGTATTACATCTCTGTAACATAGTATTACATCTCTGTAACATAGT
AATACACCTCTGTAACATAGTATTACATCTCTGTAACATAGTAATACACC
TCTGTAACATAGTATTACATCTCTGTAACATAGTATTACATCTCTGTAAC
ATAGTATTACATCTCTGTAACATAGTATTACATCTCTGTAACATAGTATT
ACATCTCTGTAACATAGTATTACACTTCTGTAACATAGTATTACACTTCT
GTAACATAGTATTACATCTCTGTAACATAGTATTACATCTCTGTAACATA
TATTACATCTCTGTAATAGTATACATAGTAACATAGTATTACACTTCTGT
AACATAGTATTACACTTCTGTAACATAGTATTACATCTCTGTAACATAGT
AATACACCTCTGTAACATAGCAATACACTTCTGTAATATAGTATTACACT
Tctgtaatcgtcagccgtgcaaaattactcgaatctgattggtttagagg
agtgcgattaatcgttaattgcactattaccactttttgcactcttcggc
ggggggacacctttgtccccttattcttttctctcccaagttcTGTGTCA
GCAGACTTAGAACACtcctgtgtcatagacccgctggGGACCCCAGCATC
ACtagaaaatttggctaaaatttcgtccccggtgggaaaaattaCAATTT
CAGCTCCATTTAAAGAGCTACATTGTTTAGAATACAACACCCAAAAGACT
ACAAAAAGTTTCACTCAACGGTAGTATATGTGAGAGCATTGCTGTACAAA
AATAGAACACCAGTTTAGCACTACTTTGTAAACACCCAAGCAGCACTAAA
CTTTACTCCGACGACCCATCTCAAGTTTTATCACTTAAAagacccctgcc
tcacagccccggtggaatatTTTTCTCAGTGtagataaaaattcctattg
agaCTCCTTTGTTCCAagtgttccaaggttaaaaattccATGGGGGATAG
TTTTagagtgtaatttttaaacattaaatttcgaatggggatgaattaaa
agttaattttcaaGTGGAGTTGAAATTATAAGGTATTTTACCCCAGGGAC
AAATTTTATGTCAATATTACCAGTAGGGATAGGCTCccagcaggtctgtg
acacaggggtatctTAAAGTATGCACTCTTTTTTATTACCATTTGGAAAC
CATCTCATTTCAATTAGGGTGATTTTCTTGAGAGTGGTCTTTACATGGTA
ACAAGAAAGAGTGCATCCTATATGGGCATTGcaatttataatataaaatg
taTTACTGTTTTTGAAATCTGGCACTAGATTGGAATTCACATACAAGTCG
AACGATGGAAACAATACGTCAGGTGGAGTTGTTCGAGTAAAAATTATCGA
TCAAGGACCTGCAGCAAATCTCCCAATCACCGActtaataaatttgaaaa
ctaaTTTCAATGTAAGTAGATATCAAAACTCGTGGTGCCATTTTCCGAAT
GGAAACTTATCTGAGGCAAAGTTTGACTGAGTTATACGATTCAAGGAGCa
cctttttcgattttttttttcgatttttaaaaatgaaagtttttcaattc
aACACTATTATTATTaagcctccataactcgaacacgcaacAGGAACACA
AAGTTAAGTTCcaattatggaaatttcatgCTATGGTTTATAAAGCATTA
TAAACTGGaaccacaaaaatcttttcaaaatttttcttcttcgcgagtcc
tcaaagttgaaacacttttcctcgcaaaagtcttcattttctttttcatc
acttttttctttacaatttttgaattttcagattcaagaatagttggcct
aacagaaaatgtataacatgctatAGTTGTTTTGGTTACATCAAGCAGAA
ATCTATACTTTGTAAATgtcaaatctaaaaatttcactatgatagaagtt
cgaattgtggctagaagtcaatctccttggtaggatttgaagccaacaaa
tcctaccaaagttgcgcggccttgagcggctcgcctggtttttacacaaa
tgacagattgaaactaaaatttaccgctaaatttcgaaaaaaatatcaat
cgtaaacaatggaattgctagattcaatctgttaaggcttcactttttct
tgcctgagaaatgGTCTACACTGTATTCAGCCAACATTATTTAATTGACC
ACTGTTGAATTCTTTTAGGAAATGAAGAagcattttgagaaaatgaacAA
AGCTGTTGGACCAGAGACCAACGACTCCAAAGAAAACGATGGTAACGGTC
AACAAAGTGAAATCAAAGCTGAAGATCTCCAAAAAGCTTACGAACTCATT
GGAGATGTCCAACAACGCCAAATCCAATTGATGGAGAAGCTAGTCCAAAA
TAATTATCACCACAAGCAAAACACAACAATCGAATCTAGCCTGCAATCGA
CACCCTACATCATGAACGTATTGGGTTCCATACCAGACAGCTATCGCAAA
GTTCGTGTTGTGTTAGACATGTCCATGATGTTAATCGAGATCTTACTTCT
ATACATGGCGCCATTATGTCTTATTGTACGGACCGACTACCAGCTACGGG
AAGTTATCCACAAAGCATGGGATATCAATATCAGTcaacaaatcaataaa
aatctGGCAATTACTACTTATAGTATGAAAGAACATTTGATAGCACAAAT
TAAAGATATAAAAGGCTTTAGAGTGTGTGGATACAGGGTTGAATTCTTCA
AAACTTTGATTATAGCATCTTTCGGACCTTTCTTAGCCATTGCTATGAGA
GCAACTTTACAACACTATGGAATCAAGTAA Coding sequence (CDS) from alignment at sc0000273_pilon:246536..251465+ >XLOC_002116 ID=XLOC_002116|Name=XLOC_002116|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4098bp|location=Sequence derived from alignment at sc0000273_pilon:246536..251465+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTTCAGATAAGGTTTGCATTCTCACTGATCAAGACGAATTAAGTGA
AGAGAATCTGGAGGATGATCAGAACTTTGGAATTTCATTCTCCAACAGTA
CACTGGTGATGGAAAATGACAACCAGGAcgaaaaatcaccaaaaattgaa
aaccaaCAGGAGAATCGGTTTCAAGAATCAAGAAGAGAGCAATCTGAAAG
CATGTCTCTGAATGAGTCAGAAAGTAATTCATCCGAAAGCAACCCTAGTG
AGGACTCAAGTTATAAACCAACAAAGAAGAATCGATCCAAAAGCAATCCC
ACTGAAGATTCTACCTTTGCAAAAAGAGTCAAAAATCGATCAAAAAGCGA
CCCATCTAGGACATCTATCTCGTCGTTAGGATCAATCAACTTTACTGGAT
CCTCAGTGATTTCGCCAGTGATCGAATCTGCCAACAATTCAACCGAAGAC
GAAAACAGAGACTTCGAGATTGTGAGAATTCCTGCTGAGAATGAAATGGA
GATTATGAAGAACAACAATGATCCACAAAATGAAGACCAGATCTTGGAGA
ATATCAATATTTATAAATCATGGTGGAAATACCCGTTAATTTTTTCAGGA
CTCTTAGGATCACAGCCTGCTCCTCGAGAAAAGAAATCCAAAAGATATTG
TAGCACATTATGCTTTAGGCGTCTCCTTATATTcgttttatttctatttc
ttctgGTCCTGAAATTTGATGGATTATTCCAAATGAGTTGGATACTACTT
GAATCAAAGTTTCCGTTCACCGTTATCAATAATGTGGTCTGGGAGCTGCG
ATGGATTTTAACGTTCTTTCTCTGCATGCTTTTTATGGATAAAGGTGGAT
TTCATAATTTCTTGAGTCATGTAGAAATCTCACGaaaaaaaTGGTATGAA
AATGCAAGAAAGATGCGGACCTACATCGGTGTTGTTTTTATGGCTTCAGA
TAAGGTTTGCATTCTCACTGATCAAGACGAATTAAGTGAAGAGAATCTGG
AGGATGATCAGAACTTTGGAATTTCATTCTCCAACAGTACACTGGTGATG
GAAAATGACAACCAGGAcgaaaaatcaccaaaaattgaaaaccaaCAGGA
GAATCGGTTTCAAGAATCAAGAAGAGAGCAATCTGAAAGCATGTCTCTGA
ATGAGTCAGAAAGTAATTCATCCGAAAGCAACCCTAGTGAGGACTCAAGT
TATAAACCAACAAAGAAGAATCGATCCAAAAGCAATCCCACTGAAGATTC
TACCTTTGCAAAAAGAGTCAAAAATCGATCAAAAAGCGACCCATCTAGGA
CATCTATCTCGTCGTTAGGATCAATCAACTTTACTGGATCCTCAGTGATT
TCGCCAGTGATCGAATCTGCCAACAATTCAACCGAAGACGAAAACAGAGA
CTTCGAGATTGTGAGAATTCCTGCTGAGAATGAAATGGAGATTATGAAGA
ACAACAATGATCCACAAAATGAAGACCAGATCTTGGAGAATATCAATATT
TATAAATCATGGTGGAAATACCCGTTAATTTTTTCAGGACTCTTAGGATC
ACAGCCTGCTCCTCGAGAAAAGAAATCCAAAAGATATTGTAGCACATTAT
GCTTTAGGCGTCTCCTTATATTcgttttatttctatttcttctgGTCCTG
AAATTTGATGGATTATTCCAAATGAGTTGGATACTACTTGAATCAAAGTT
TCCGTTCACCGTTATCAATAATGTGGTCTGGGAGCTGCGATGGATTTTAA
CGTTCTTTCTCTGCATGCTTTTTATGGATAAAGGTGGATTTCATAATTTC
TTGAGTCATGTAGAAATCTCACGaaaaaaaTGGTATGAAAATGCAAGAAA
GATGCGGACCTACATCGGTGTTGTTTTTGTCATCACAGTTTTCGCCCCAC
CGATGTTTGTTTTCTTGGATCAGAATTGGTTAAATATTGCCAGTCTTGCA
AAACCGGATATGTGGAAGAAGATATTGATGGCCGTTCTGGTGTTCTTGTA
TCGTTTGATCATGACGCCGAGTTTTTGTGTTTTATCAGCCGTTTTGTATC
TGTTGGGTGATCATATAAGGATGACTGGGAAAcgaatttcccaacaaaaa
acAGGTCATCACAGTTTTCGCCCCACCGATGTTTGTTTTCTTGGATCAGA
ATTGGTTAAATATTGCCAGTCTTGCAAAACCGGATATGTGGAAGAAGATA
TTGATGGCCGTTCTGGTGTTCTTGTATCGTTTGATCATGACGCCGAGTTT
TTGTGTTTTATCAGCCGTTTTGTATCTGTTGGGTGATCATATAAGGATGA
CTGGGAAAcgaatttcccaacaaaaaacAGCAAACGATGCACATGATCTG
GTCCGTAAAATGCGAAAGTTGATCACAGAGACTGAGCACTCCCTACAAAT
TAACATTGTGGTTCATATGTTTCTTGTGTTTTGTGTCTCCTTCACCACAG
CTATGTCTACGTTAGAAAGCAAACGATGCACATGATCTGGTCCGTAAAAT
GCGAAAGTTGATCACAGAGACTGAGCACTCCCTACAAATTAACATTGTGG
TTCATATGTTTCTTGTGTTTTGTGTCTCCTTCACCACAGCTATGTCTACG
TTAGAAAGATTGGAATTCACATACAAGTCGAACGATGGAAACAATACGTC
AGGTGGAGTTGTTCGAGTAAAAATTATCGATCAAGGACCTGCAGCAAATC
TCCCAATCACCGActtaataaatttgaaaactaaTTTCAATATTGGAATT
CACATACAAGTCGAACGATGGAAACAATACGTCAGGTGGAGTTGTTCGAG
TAAAAATTATCGATCAAGGACCTGCAGCAAATCTCCCAATCACCGActta
ataaatttgaaaactaaTTTCAATGAAATGAAGAagcattttgagaaaat
gaacAAAGCTGTTGGACCAGAGACCAACGACTCCAAAGAAAACGATGGTA
ACGGTCAACAAAGTGAAATCAAAGCTGAAGATCTCCAAAAAGCTTACGAA
CTCATTGGAGATGTCCAACAACGCCAAATCCAATTGATGGAGAAGCTAGT
CCAAAATAATTATCACCACAAGCAAAACACAACAATCGAATCTAGCCTGC
AATCGACACCCTACATCATGAACGTATTGGGTTCCATACCAGACAGCTAT
CGCAAAGTTCGTGTTGTGTTAGACATGTCCATGATGTTAATCGAGATCTT
ACTTCTATACATGGCGCCATTATGTCTTATTGTACGGACCGACTACCAGC
TACGGGAAGTTATCCACAAAGCATGGGATATCAATATCAGTcaacaaatc
aataaaaatctGGCAATTACTACTTATAGTATGAAAGAACATTTGATAGC
ACAAATTAAAGATATAAAAGGCTTTAGAGTGTGTGGATACAGGGTTGAAT
TCTTCAAAACTTTGATTATAGCATCTTTCGGACCTTTCTTAGCCATTGCT
ATGAGAGCAACTTTACAACACTATGGAATCAAGTAAGAAATGAAGAagca
ttttgagaaaatgaacAAAGCTGTTGGACCAGAGACCAACGACTCCAAAG
AAAACGATGGTAACGGTCAACAAAGTGAAATCAAAGCTGAAGATCTCCAA
AAAGCTTACGAACTCATTGGAGATGTCCAACAACGCCAAATCCAATTGAT
GGAGAAGCTAGTCCAAAATAATTATCACCACAAGCAAAACACAACAATCG
AATCTAGCCTGCAATCGACACCCTACATCATGAACGTATTGGGTTCCATA
CCAGACAGCTATCGCAAAGTTCGTGTTGTGTTAGACATGTCCATGATGTT
AATCGAGATCTTACTTCTATACATGGCGCCATTATGTCTTATTGTACGGA
CCGACTACCAGCTACGGGAAGTTATCCACAAAGCATGGGATATCAATATC
AGTcaacaaatcaataaaaatctGGCAATTACTACTTATAGTATGAAAGA
ACATTTGATAGCACAAATTAAAGATATAAAAGGCTTTAGAGTGTGTGGAT
ACAGGGTTGAATTCTTCAAAACTTTGATTATAGCATCTTTCGGACCTTTC
TTAGCCATTGCTATGAGAGCAACTTTACAACACTATGGAATCAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000273_pilon | genome | sc0000273_pilon:246536..251465 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1438-2049:4319 |
| Aaloc | 1306-1437:3430 |
| Aaloc | 1168-1302:1688 |
| Aaloc | 940-1164:1173 |
| Aaloc | 1-939:1 |
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