XLOC_002090 (mRNA) -

Overview


Name	XLOC_002090
Unique Name	XLOC_002090
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000273_pilon:207367..212266-
coding sequence from alignment at sc0000273_pilon:207367..212266-

mRNA from alignment at sc0000273_pilon:207367..212266-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_002090 ID=XLOC_002090|Name=XLOC_002090|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4900bp|location=Sequence derived from alignment at sc0000273_pilon:207367..212266- (Clytia hemisphaerica_ch_hm2_pilon)
AGGATGGAACTCAAAACGCAAATCCAAGCATTGCTCCTTTACATCCTAGT
CGCTCACTCACTTGCCAAGGTATGCCTGGTGAAGGAGGAAAAGAACAAGG
AGAATGTATTTATGCTTGAGAAAGGTGGCGATTGCCAAGAATGTCAGCAA
TTCTTCTACAAGAATGTGTGGCCAAAATTCTCAAGGAACAGTATCAAATG
GCATTTCATTTGTCAGTATTATGAGAATCAACCAAGTTTTTTTACATTGT
ACGATATCAGATATCGAATGCCTTTGTTTTCAGCGTATAGACTGAATCTG
GGCGCTAAAGAAGCGTCTTGCAATATAGATGAGCCATGTCCTGAAGCTGC
GGGCAACAATGGTTTAGTATCTAGCAGTAGTGGGGCTGGAGCTTCAGGAA
CAAGTAATACTAACCAAAAAGTTGGGGAAAAACGGCCACAAACTTCTAAT
TCTGGTAAACCAACACCAAACGTAAAAAGACCAAAAATCGAATCACCTTC
ATCGAATCAAGGTTCAAAGGAACAAAAGCCAGGGCTAAGGAGTGAAGAGA
ACACCAAAGTCTCTTTTTCAGGCTTGCAAGAGAAATCCTTGTCGTTAGTG
GACCATAGTAACAGGAATAACAAAGGTGACAGTTACCCATTCAAACGAAC
GAAAGAGAAGACGAGTAAAGAAAACTATGAAGAGGAGAATGAAGATAGAA
AGAAATTACGAAAGGAAGAAGACAAGCGAACAAAACCGGACGCCGAACCC
TTCGATGATATGGATCGTAGAAGTAGGATTGGCGCTACAGGGCCAGCACT
AAGTGCTCGGATTGGCGTTGCAGGGCCAGCACTAAGTGCTCAAGATGACC
ATGAATCATTACGCCTTGAAGAAAATTTTGTTAAAAAGACAAAGTTGAAA
CGACGATATGAGGGAGATATTGATGTCGACAGAGTTTCCTTTGATGATGA
TTTCGATCGAAAGAGACGTAGTGAAAATGATGATATTGAATCAACGGTGG
CGAATGCTGGAGAAGTCAATGTCCTTCCTGGCAAGCCTCGTTCTGAAAAG
GAAGTGTCTCAACTGGCAAATTCTATTAAATCAAGAATTACTGAAGCCTC
CAGTGAAGAATCATTGACAAAATTTGGCCCTGGATTGCTGGCAAACTTAC
CTGAGAAACCTAAAAGTGAAAAGATCAACTCAACGGTGGCGAATACTGGA
GCCAATGTCCTTTCTGATGGGGAATCTGTTAAGAGAAAACGTAAGCTTAG
CAATAATTTTGAATCGGTCTCACAACTGCATACTGTTGCAGGTTATCGAC
GTAGTTTCAATGGAAAGAACTTTACTGTATCTAGCTTGTACGATAATTTC
ATTCAAGATTTTTATGAGAATCACAGCGGCGAGAAGAAAGAAAATAGTTT
TCGCAGTAAAAAGAAGTCAACAAAGGGAATTAAAAAATCACACAAAAACT
TTGTAGAGAAAGACCTTCAGCTTGGTAAGCCTCATACTGAAAAGAAAGTG
TCGCAACTGGTAAATCATGTTAAATCAAGAGTTACTGGAGCTTCAAGAGA
AGATTTTTTAACGAAACTTCGCCCTGGATTGCTTGAGTCAGGAAAAGAAA
AGGATAATGTTACACAAAATTCCAATGGGACAACAACCGCATTGAAGCTT
CCTTTAGCAAAATATATTGACTTGACCATATTAGGAGATTCAAGTAATGA
CTCTTCCTCGAAAAACATAGATCAAGAAAAGGATGTACTCAGTCTTTGGC
AACCTAACAAACCTAAAACCGGAAATAGCGTCTCTCCTTTGGGAAAATAT
ATTGATTCAACAATAATGGGAGAATCAAATTCAACAGATTATCGTGCACA
AAAACGAGGGCCCGGGCAAGGAGGGGCCAGTGACACGACCAAAAGTGAGA
AAAAGAAACAATGGAAAAATGAGCCACAACTTGAATTGAGTAATGTTGAC
CCAAACAGAGGGAAATTTGAAAACATGATGAAAACAGGCTCAAAAAATTT
CCCTGTTTCTTCACAGAGCGTTAATAATCAACCTCAGAATTCAAATTTTG
AAAATTCTGGATGGGACAGAGGACATTTGAATCCAAATCGATTTCAAGTA
AGTACACGTATTTTTATAAGAATAAACTATAAGAAGATAAGGCTTCGATG
ACCAAAATGTTAAGAACAAGTTTTAGAACATTTTAATGCTGCGTGGACCA
TAAAACACCTGATTTCTTAGAAAAATGGACAGAGATATACTCTAAAAATG
GTGAAAATACGAACATGTTAAGAACATCTTTAGGCTTAAAACTCCAAAAC
TTAAAAACATCCGAAGGCTTCAGAAATTGTGGATGTTCTTATGAGAAAAA
AAATTTTACTCTAATCTTCAGAATGCGTTCCCGTCAGGGAACAAAACAAA
ACCCTCTTAAAATACTCTCTCTATAATTCGAATCTCTCTTTTATTCGAAA
AAATAAGATTCCCCGTTCGACGTTCGATTTAGTGAGAGTCAAAAAATGGA
CGGGTTACGAATGGAATGGTATTACCCAGCTGACACACAACATCGTTTCA
ACGTTTTTCTAATATTCACAACGTTCATATAACGTTAAATGAACGTTGAA
ACAACGCTGTGTGTCAGCTCGGTACGTTATTAACGACATCCGGTCAATAC
CATTTCCAATATTCCATCCGTAATTTTGTTTTATAGATAGACGATGATAG
CGAAGCCACTTACACGCTAACAAATGCGGTGCCACAATACCCAGGGTTCA
ACTCCGGTTATTGGTGTGAGCTCGAACAATACACTTTACAAGCAATGAAG
ACATTCTGTAAGGGTGGTGTACCCTATTTGATCACTGGCGCAACGCCCGG
TTTAACGCCCAAAGAACGAGAAATGGATATTGGGACAAAGTTAAAAGAGA
AACAGGTAACACTAAATATATTGAGAATTTAGGTCAGAAGGAAAAATCAA
TTTTCTAGTTTCCACCCTGAAAATTGTCTAATCTAAATAACCAAAACTCG
ACCCTGTCAGATACGCATTTTGAAAAATTAGTAAATTTGGCACCTTACCA
CATATCTTCAGAACCTAAAAAAAGGACTCTAACCAGCGGCACATCCCCGT
ACCCAATTTTCTGCGTGATCCCTGCTCAATATAACAACAAATATCTAATC
ATATAAAACACTAGATCGAGTTATTCTGTCCCTTCTTGAAGCTTAACAAT
GCGCCACCTTTAAAAGTAGACTACAGTTCGTTGCCCGCAATTTGACCAAT
CAACGCCATTCTCTTGCCTCTTCGTTTCTTGCTATGTCGCTGTTTGTCAC
ATTGAACAAATTGCCGGTGCCGAACTATAATTTACTACTGTGTAGTCCAC
TCAGCAAAAACGGCGCGTTATTTTACTTCAACTTAGCTGTGGTTTGAGAA
AGACAGCATGAGCTCTATCTAGTGTTTTATATAAGATACCCGTATGTAAT
CTAGCACGTTTGAAACAAGGTTGTGAGTGCGGATCTCTTTCACGTCGAAT
ATTTGTATTCTAGTGTCGATATTTTACGTGGATAGCCCAGTAATCTAGGA
CTTTTAGACAGTCTTTCGATTGTTTTCACGGGGTCCACGGCCAGCTGGCA
TAGTTATCTATGAACTGAACGGAACATTGGAAGGAGCGGGGATTCGAACC
GTGAATCCCTGGTTTTGAGACGCTGACGCCTTTGACCACTTGGCCATCGC
TTCATAATATGTTTTCTATTTCAGATTGTGATTCCATTGATGTTGTACAC
TGCAGCATGTTGTGATAAAGGAAAAGAATCATTCTCCTTTGGATTTTATG
GTACAAACGAAGCAAAACCCAAAATTGGAGTTATCAAGGTTAGACTCGAG
CCCAGCTGGCACACAACGTTATTTCAACGTTCATTTTATGTCCACAACGT
CCATATAACGTTAGATGAACGTTAAGACAACGTCGTGTACCTGCTGGGAT
TTTAACCTTTTCTTTTCCTTTTGAAAAAACGTTTTCCTTTACGGAATAGC
TATTTTCATTATATCACAACTAGGTACCAGTTTGCAGAGTGTGGCACGTT
TGCTCGAGATCTCGAGTGCACAACTCGGAAAAAGTCGAGTGCAGGTGCAA
AATTTGAGCTTTTCAGACGGATTTTTAACCTCCATTGCAGAGTTCAGCTA
TTTTTTCCTCAAGTGCAGCTAATTTTAGCAATTTTTGCCTTTTTGGGCGA
ATTTCTGAGTTATAAGTGCACTTTTTCCGGACCAAAATTTATCAGGTCCG
TTCTTCCATTACAGAACTTGGTATTACCGAATTTTTCCTCGAGTACAGCC
TTGCCATACTCTGCAAACTAGGGCACAGAATATAATCGAGACAGGGATGA
AACTACTATCGGTATTCGAATCTCAAAAGTTCAGTAGATTGTAAATAGTC
TCGTCAGTAAATACCATCCGGATAATCATAATATATTTATTTGTCTCGCT
ATCGAACACAACGTGCTCAAACTGTCAAAAATGGCTTGTAAAAAGAATTT
ATCAATCTTTCTTCTCACACAACAACAGGTCAACGAGTTGATCAGCATTG
TGAACAAACAGCAAGATCCAACAGATAGAATCATCCTTGATCAATTCTTC
CCTGGAGATGCAGACAACTGCAAAAGTGACCAAGGATCACCAGCAATGAA
CGAGATCAAGACGAAAGTTGAAGAAATGCAAATAAAACGACTTGAGAATC
TGATTTTTGATGAATCTTTACTTAAACCTGAACCAAATAGCAAGGATGCT
GGGTCATTAGGATCAGGAGGAAGCCAGGCTTCCACCAGTGGGAAGGGGGC
AACAACCAGTGCTAAAGGAGGAAGCAATAAGAGGAAGCTACATGATAATG
ATATAAAGGAGACCGATGAGGATGTAGTCAATCTTGATGTTTTCCAATAG

Coding sequence (CDS) from alignment at sc0000273_pilon:207367..212266-

>XLOC_002090 ID=XLOC_002090|Name=XLOC_002090|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5604bp|location=Sequence derived from alignment at sc0000273_pilon:207367..212266- (Clytia hemisphaerica_ch_hm2_pilon)
AGGATGGAACTCAAAACGCAAATCCAAGCATTGCTCCTTTACATCCTAGT
CGCTCACTCACTTGCCAAGGTATGCCTGGTGAAGGAGGAAAAGAACAAGG
AGAATGTATTTATGCTTGAGAAAGGTGGCGATTGCCAAGAATGTCAGCAA
TTCTTCTACAAGAATGTGTGGCCAAAATTCTCAAGGAACAGTATCAAATG
GCATTTCATTTGTCAGTATTATGAGAATCAACCAAGTTTTTTTACATTGT
ACGATATCAGATATCGAATGCCTTTGTTTTCAGCGTATAGACTGAATCTG
GGCGCTAAAGAAGCGTCTTGCAATATAGATGAGCCATGTCCTGAAGCTGC
GGGCAACAATGGTTTAGTATCTAGCAGTAGTGGGGCTGGAGCTTCAGGAA
CAAGTAATACTAACCAAAAAGTTGGGGAAAAACGGCCACAAACTTCTAAT
TCTGGTAAACCAACACCAAACGTAAAAAGACCAAAAATCGAATCACCTTC
ATCGAATCAAGGTTCAAAGGAACAAAAGCCAGGGCTAAGGAGTGAAGAGA
ACACCAAAGTCTCTTTTTCAGGCTTGCAAGAGAAATCCTTGTCGTTAGTG
GACCATAGTAACAGGAATAACAAAGGTGACAGTTACCCATTCAAACGAAC
GAAAGAGAAGACGAGTAAAGAAAACTATGAAGAGGAGAATGAAGATAGAA
AGAAATTACGAAAGGAAGAAGACAAGCGAACAAAACCGGACGCCGAACCC
TTCGATGATATGGATCGTAGAAGTAGGATTGGCGCTACAGGGCCAGCACT
AAGTGCTCGGATTGGCGTTGCAGGGCCAGCACTAAGTGCTCAAGATGACC
ATGAATCATTACGCCTTGAAGAAAATTTTGTTAAAAAGACAAAGTTGAAA
CGACGATATGAGGGAGATATTGATGTCGACAGAGTTTCCTTTGATGATGA
TTTCGATCGAAAGAGACGTAGTGAAAATGATGATATTGAATCAACGGTGG
CGAATGCTGGAGAAGTCAATGTCCTTCCTGGCAAGCCTCGTTCTGAAAAG
GAAGTGTCTCAACTGGCAAATTCTATTAAATCAAGAATTACTGAAGCCTC
CAGTGAAGAATCATTGACAAAATTTGGCCCTGGATTGCTGGCAAACTTAC
CTGAGAAACCTAAAAGTGAAAAGATCAACTCAACGGTGGCGAATACTGGA
GCCAATGTCCTTTCTGATGGGGAATCTGTTAAGAGAAAACGTAAGCTTAG
CAATAATTTTGAATCGGTCTCACAACTGCATACTGTTGCAGGTTATCGAC
GTAGTTTCAATGGAAAGAACTTTACTGTATCTAGCTTGTACGATAATTTC
ATTCAAGATTTTTATGAGAATCACAGCGGCGAGAAGAAAGAAAATAGTTT
TCGCAGTAAAAAGAAGTCAACAAAGGGAATTAAAAAATCACACAAAAACT
TTGTAGAGAAAGACCTTCAGCTTGGTAAGCCTCATACTGAAAAGAAAGTG
TCGCAACTGGTAAATCATGTTAAATCAAGAGTTACTGGAGCTTCAAGAGA
AGATTTTTTAACGAAACTTCGCCCTGGATTGCTTGAGTCAGGAAAAGAAA
AGGATAATGTTACACAAAATTCCAATGGGACAACAACCGCATTGAAGCTT
CCTTTAGCAAAATATATTGACTTGACCATATTAGGAGATTCAAGTAATGA
CTCTTCCTCGAAAAACATAGATCAAGAAAAGGATGTACTCAGTCTTTGGC
AACCTAACAAACCTAAAACCGGAAATAGCGTCTCTCCTTTGGGAAAATAT
ATTGATTCAACAATAATGGGAGAATCAAATTCAACAGATTATCGTGCACA
AAAACGAGGGCCCGGGCAAGGAGGGGCCAGTGACACGACCAAAAGTGAGA
AAAAGAAACAATGGAAAAATGAGCCACAACTTGAATTGAGTAATGTTGAC
CCAAACAGAGGGAAATTTGAAAACATGATGAAAACAGGCTCAAAAAATTT
CCCTGTTTCTTCACAGAGCGTTAATAATCAACCTCAGAATTCAAATTTTG
AAAATTCTGGATGGGACAGAGGACATTTGAATCCAAATCGATTTCAAAGG
ATGGAACTCAAAACGCAAATCCAAGCATTGCTCCTTTACATCCTAGTCGC
TCACTCACTTGCCAAGGTATGCCTGGTGAAGGAGGAAAAGAACAAGGAGA
ATGTATTTATGCTTGAGAAAGGTGGCGATTGCCAAGAATGTCAGCAATTC
TTCTACAAGAATGTGTGGCCAAAATTCTCAAGGAACAGTATCAAATGGCA
TTTCATTTGTCAGTATTATGAGAATCAACCAAGTTTTTTTACATTGTACG
ATATCAGATATCGAATGCCTTTGTTTTCAGCGTATAGACTGAATCTGGGC
GCTAAAGAAGCGTCTTGCAATATAGATGAGCCATGTCCTGAAGCTGCGGG
CAACAATGGTTTAGTATCTAGCAGTAGTGGGGCTGGAGCTTCAGGAACAA
GTAATACTAACCAAAAAGTTGGGGAAAAACGGCCACAAACTTCTAATTCT
GGTAAACCAACACCAAACGTAAAAAGACCAAAAATCGAATCACCTTCATC
GAATCAAGGTTCAAAGGAACAAAAGCCAGGGCTAAGGAGTGAAGAGAACA
CCAAAGTCTCTTTTTCAGGCTTGCAAGAGAAATCCTTGTCGTTAGTGGAC
CATAGTAACAGGAATAACAAAGGTGACAGTTACCCATTCAAACGAACGAA
AGAGAAGACGAGTAAAGAAAACTATGAAGAGGAGAATGAAGATAGAAAGA
AATTACGAAAGGAAGAAGACAAGCGAACAAAACCGGACGCCGAACCCTTC
GATGATATGGATCGTAGAAGTAGGATTGGCGCTACAGGGCCAGCACTAAG
TGCTCGGATTGGCGTTGCAGGGCCAGCACTAAGTGCTCAAGATGACCATG
AATCATTACGCCTTGAAGAAAATTTTGTTAAAAAGACAAAGTTGAAACGA
CGATATGAGGGAGATATTGATGTCGACAGAGTTTCCTTTGATGATGATTT
CGATCGAAAGAGACGTAGTGAAAATGATGATATTGAATCAACGGTGGCGA
ATGCTGGAGAAGTCAATGTCCTTCCTGGCAAGCCTCGTTCTGAAAAGGAA
GTGTCTCAACTGGCAAATTCTATTAAATCAAGAATTACTGAAGCCTCCAG
TGAAGAATCATTGACAAAATTTGGCCCTGGATTGCTGGCAAACTTACCTG
AGAAACCTAAAAGTGAAAAGATCAACTCAACGGTGGCGAATACTGGAGCC
AATGTCCTTTCTGATGGGGAATCTGTTAAGAGAAAACGTAAGCTTAGCAA
TAATTTTGAATCGGTCTCACAACTGCATACTGTTGCAGGTTATCGACGTA
GTTTCAATGGAAAGAACTTTACTGTATCTAGCTTGTACGATAATTTCATT
CAAGATTTTTATGAGAATCACAGCGGCGAGAAGAAAGAAAATAGTTTTCG
CAGTAAAAAGAAGTCAACAAAGGGAATTAAAAAATCACACAAAAACTTTG
TAGAGAAAGACCTTCAGCTTGGTAAGCCTCATACTGAAAAGAAAGTGTCG
CAACTGGTAAATCATGTTAAATCAAGAGTTACTGGAGCTTCAAGAGAAGA
TTTTTTAACGAAACTTCGCCCTGGATTGCTTGAGTCAGGAAAAGAAAAGG
ATAATGTTACACAAAATTCCAATGGGACAACAACCGCATTGAAGCTTCCT
TTAGCAAAATATATTGACTTGACCATATTAGGAGATTCAAGTAATGACTC
TTCCTCGAAAAACATAGATCAAGAAAAGGATGTACTCAGTCTTTGGCAAC
CTAACAAACCTAAAACCGGAAATAGCGTCTCTCCTTTGGGAAAATATATT
GATTCAACAATAATGGGAGAATCAAATTCAACAGATTATCGTGCACAAAA
ACGAGGGCCCGGGCAAGGAGGGGCCAGTGACACGACCAAAAGTGAGAAAA
AGAAACAATGGAAAAATGAGCCACAACTTGAATTGAGTAATGTTGACCCA
AACAGAGGGAAATTTGAAAACATGATGAAAACAGGCTCAAAAAATTTCCC
TGTTTCTTCACAGAGCGTTAATAATCAACCTCAGAATTCAAATTTTGAAA
ATTCTGGATGGGACAGAGGACATTTGAATCCAAATCGATTTCAAATAGAC
GATGATAGCGAAGCCACTTACACGCTAACAAATGCGGTGCCACAATACCC
AGGGTTCAACTCCGGTTATTGGTGTGAGCTCGAACAATACACTTTACAAG
CAATGAAGACATTCTGTAAGGGTGGTGTACCCTATTTGATCACTGGCGCA
ACGCCCGGTTTAACGCCCAAAGAACGAGAAATGGATATTGGGACAAAGTT
AAAAGAGAAACAGATAGACGATGATAGCGAAGCCACTTACACGCTAACAA
ATGCGGTGCCACAATACCCAGGGTTCAACTCCGGTTATTGGTGTGAGCTC
GAACAATACACTTTACAAGCAATGAAGACATTCTGTAAGGGTGGTGTACC
CTATTTGATCACTGGCGCAACGCCCGGTTTAACGCCCAAAGAACGAGAAA
TGGATATTGGGACAAAGTTAAAAGAGAAACAGATTGTGATTCCATTGATG
TTGTACACTGCAGCATGTTGTGATAAAGGAAAAGAATCATTCTCCTTTGG
ATTTTATGGTACAAACGAAGCAAAACCCAAAATTGGAGTTATCAAGATTG
TGATTCCATTGATGTTGTACACTGCAGCATGTTGTGATAAAGGAAAAGAA
TCATTCTCCTTTGGATTTTATGGTACAAACGAAGCAAAACCCAAAATTGG
AGTTATCAAGGTCAACGAGTTGATCAGCATTGTGAACAAACAGCAAGATC
CAACAGATAGAATCATCCTTGATCAATTCTTCCCTGGAGATGCAGACAAC
TGCAAAAGTGACCAAGGATCACCAGCAATGAACGAGATCAAGACGAAAGT
TGAAGAAATGCAAATAAAACGACTTGAGAATCTGATTTTTGATGAATCTT
TACTTAAACCTGAACCAAATAGCAAGGATGCTGGGTCATTAGGATCAGGA
GGAAGCCAGGCTTCCACCAGTGGGAAGGGGGCAACAACCAGTGCTAAAGG
AGGAAGCAATAAGAGGAAGCTACATGATAATGATATAAAGGAGACCGATG
AGGATGTAGTCAATCTTGATGTTTTCCAATAGGTCAACGAGTTGATCAGC
ATTGTGAACAAACAGCAAGATCCAACAGATAGAATCATCCTTGATCAATT
CTTCCCTGGAGATGCAGACAACTGCAAAAGTGACCAAGGATCACCAGCAA
TGAACGAGATCAAGACGAAAGTTGAAGAAATGCAAATAAAACGACTTGAG
AATCTGATTTTTGATGAATCTTTACTTAAACCTGAACCAAATAGCAAGGA
TGCTGGGTCATTAGGATCAGGAGGAAGCCAGGCTTCCACCAGTGGGAAGG
GGGCAACAACCAGTGCTAAAGGAGGAAGCAATAAGAGGAAGCTACATGAT
AATGATATAAAGGAGACCGATGAGGATGTAGTCAATCTTGATGTTTTCCA
ATAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_002090	XLOC_002090-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000273_pilon	genome	sc0000273_pilon:207367..212266 -

Properties


Property Name	Value
Aaloc	2431-2802:373
Aaloc	2317-2430:1177
Aaloc	2098-2316:2215
Aaloc	1-2097:4901

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XLOC_002090 (mRNA) -