XLOC_001565 (mRNA) -

Overview
NameXLOC_001565
Unique NameXLOC_001565
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000485_pilon:2812..8655+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001565 ID=XLOC_001565|Name=XLOC_001565|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5844bp|location=Sequence derived from alignment at sc0000485_pilon:2812..8655+ (Clytia hemisphaerica_ch_hm2_pilon)
GACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAA GTTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTG CAGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAA GGTATGTTTGGAGTCAAATTTGTATATGTTTAACATGTGGAATTGTTCCA CCCTTAAAATCAATTTATGGCTATATCTGAGAATATTGATCATAACATAA AATCTGTACTTTCTATCACAGCACGATATACTGTCCGATCCTTTGGAATC CGTCGTAATGAAAAGATTGCTGTCCATTGTACCGTCAGAGGTGCCAAGGC TGAAGAAATCTTAGAAAAGGGGCTCAAAGTCAAGGAATACGAATTACGGA GACGAAACTTCTCTGAAACCGGAAACTTTGGTTTTGGTATTGCAGAACAC ATTGATTTAGGAATCAAATACGATCCCAGCATTGGTATTTATGGAATGGA CTTTTATGTTGTCCTTGCACGACCAGGATATAATGTTGCTTACAGAAGAC GCAAGAAGGCTAAAGTTGGATTTCCCCACCGTATCAGAAAAGCAGATTCA ATGAAATGGTTTCAACACAAAGTAAGAAACTTTAATTGAATACTAAAAAT AGGCCATTCTATTTCTCAATCATGCAGAGGTATTGTCAAACTCCAAGGAA GTATGAGGCCTTTATTTTACAAGGGGTCAGTCATTACAAGTATATTGAAG AGTACATtctgaaatttttagaaatctccagcttatttattatttatctt tTCTGAGAATAGGGTGACAGAGTTAAGATGGTGATACTGACATTCGACAT ACGGTATAGTGCTGAGGAGTCATTGTGATTTTAGTGTTTGGAGCAAAGAC ATGCagaaacagtgaaaaaactaaatactaatataatattttcaaaaagt tcataaTTATGTATCATTAAGGGGTCCTCAACAAAACGCATTGGGTTGAT AAGCTTTGAACCCCCTCGCCCTTATTGgctgtaatttttaaaacaaagtt tagccttttcaaaatcatgatttttttgcaATCATGTCCCTTATCACGCT GATCTTGCCTATACACCTGCCATCACTGTTGAGTGTTTGTCTATCTGTAC CCacattgatattgttaatcgAAATGAAAATTAGAATGAGATGATTAATT TGcaacaattttgaaagaaatagtAGCGCGCTGGTCAATAaaagagaagt ttttttttATCGAAAAACTCTAAACTGTGCTTTTAAAGTTGGGAATTTGT GCATGATGGTAGAAGCAAGTGAAATTTGTGCTTTCAGTGGAGTTTGAAAA AGGCTGAAAAAGATGCATGGTCCCCCCCCCCTTCTTAAAATAAGGGGTGT AAAAAAATTGCCATTTGAAAAAGGGGGATTTTTTTAtttatttttttaaa gaaggggGAGAAATACAAACTTATGatgagcagaaacttttgtgaggtca aaaaattgcaaaatttgtgTCATTTACTTtgcaatttgatgaaaaaaaat tctttgtgaTCAATAACTTTTGTGAATCAGGATATTAAAATTTTCACACA GaaaaaaaTTGGCtgagagggacaaatacttcttgaattgTATTGAAATG TTGGTCTTTTTGAGTCGTGAGGCtataaaaattttcccaaaaaaggtact tggggggagctaaaatctcattacttaacgtgggggctaaaataattcag cttaatagtttgcttcaattactcaaattgaagctcatgaatctgaaaaa ctTTCCCCTGTggcgcaatatttttatagaaaattaagCAAGATTAATGC TTTGATTTATCTTTAGACAAAGCAATACATTTTTCAGGGGTATGGGGAAA GTTTTTCAATGCCTATGTTTGGTTTGAAAATGTATTTTGATTCTAGAAAA CAGCTCAGATATGTCTATTGCATGGGACATTCGAACAACATATGTTCAAC ACATCTCCAGTGATATGATAGAAACATCAGTATTCTTAGCAAACTTGTAA TTTTTAGCAGAGAGGCTAAGCAGTTTGCAGCTTACCCAGGGTTACCTCTG TCAGGCCATCTTTCTTTAGCGTCCATTCTGTCCCTCCTTAAATCACtaga attttggtaaaaacaacCTTGTAGTGGAAAAACAATAGTAAAAGTGTCTC TCTTGGCCACCAACAGACCCTGTCCTGCCTTTCTGAAATATGGCCTGTCT GTCTTTCAACCTCATTTGTAACAAAGTGTAATTTAGGTAACTAATACAAA GTGTGCAGCTAAAGATAGTGATAGATAGATAAATAAATAGATACATAGAT TTGTAATACCGGAATTTCAAGTGTTTATTATAAACCTGTTGTTTCTGGGG TGGTCATTAGGTGgtcttttttataaaactttaaTCATAGACCTGTGAAG TTTGTAAGATTTGTTACCAATTGAGGttgatttttgagaatcttttttaG GTACTCTGTTTCCtttgaggattttttttttttgaattattgagGTTGAC AGTTAGGCTAGAGTTCAGGGTATGcgcattgtttttttgtttattttgtt tttcagctTAAATGCATGCACTTTGAGTTTTCTATGAAATAGTAGAGTTT caaaacctaagccaatcagctctGTTTTAGACATTCGTTTATTTAAAATC CCTATTAATCCCAGTTTTAAATCCTTTTGATATTCAAATTTCTAGTGGGT CAGTAGTGGCTAGTGGGTTAGTAGTGGCTGCTTTAAAGTGTGTCTATAGG CTAAGAGTATTTTAACTTAGGAATCTTGGCAGATTTCTAATAGAAATTTA GCTATTAGTTACAAAAGAATTAGTTCCATTTTACTAagactacagtatat ggcccccaaaacggagacggcccccaaaacggaggtcttcattaaaatga agattctgacttgtagatttatcagaattaaacgatttttgtttattttg aaagaatgatggttatacttaaaaaaagcatgtttttgctggtttgagac agattcaaaataacatatttgcgtctaaaggaaatattttaacacaaatt agataaaaattgcatataactcactctagctccttgaatattgaaaataa gttatgaaaacggggtataggaaactttctacacctaatgccgttcagaa aatgcaaatacatctgtgactttagaggctgggtaaaagatacacgttct tttttttataagaacgtcaaaaaattttgaagcctttggatgcttttagt tttttggatttgaagcctaatcatagttcgcaccccccccccttataaag gggggggtagcgatgttcagaaaatctcagaaaggggggggtaagagaat tttttctagaaagggggaagttttcagaaaggggggggctcatctagaaa ggggggggtaagatgtcagtggtatgttttttttgtgttttcccaaatta gaagttttatttttaatttacaatgcaacgtcttctttattaattgttta gtatgtttgaaacattcgattcaaaatgattctatttttttcgcaatgca gtgtgttctattttcttgctttttcaccGGTAGAATTAtggtaggatttt aaaattttgaggggggtgacatcaaattttaaaagggggaagaacctagg gtagggggggtagctctagggtagggggggtagtgacccccttccgaact atgtaaaaaatgttcttaaaatgttcttattttcaatattttttgagcat tttgatgtaatttcttaagaaattgcatgtttttaagtctccaaagcctc agtatgttcttagaatgttcttaaatttttgggcttcgaagccttacgtt cttatatagtttgttcttaaaaaaaaacgtgtatagcatcttgaaggtca accagtattttggagccctagaatcagcattgacaaaaccgaaaatttta aatatgagaaaaagcaaaaaatcttggaattctattcctatcaccttgag ttaatagtttataacaaaaaattaacattatatatataaattttcgctga atcagcaaaaacggctaattcagtcatttttttgcaaaatataggagaaa aatatccttaaagcttaatattttcagtttcagttaagctttttttctaa aattttcacagcttattccatacatgaatggaactattttcaaaagagta gtagagggcattttgtaaaatcgcatgacttttttgttagaagcacttgt tatacatttttggaaagctaaggggtaggggaatcgaaattactatgttt ccaattttttttcggacactttggtgtgatttccggacaaatatgacggt ctcaggcaaaaatcatagggttaaaaattaatgaaaattttagctcgaga aaacggagacctgttgtatatttttggaaagctctcaaaaaattaggatt agagatatattgcaagtataggtgatttcagtacctagctcgagatattg agcttcaaaaagcgcaaaaactggacaaaatagctgtttctggctgaaaa acacggttttcaagggttaatatctcgagttaggtacagaaatcacctat acttgcaatatatctctaatcttaattttttgagagctttccaaaaatat acaacaggtctccgttttctcgagctaaaattttcattaatttttaaccc tatgatttttgcctgagaccgtcatatttgtccgaaaatcacaccaaagt gtccgaaaaaaaattggaaacatagtaatttcgattcccctaccccttag ctttccaaaaatgtataacaagtgcttctaacaaaacagtcgagcgattc caaaaaatcgaacaaaattccccctactagagatttgttttcaaaaactt gattaagacgttgttaaatcaaaattgtcattttgaaaatttctaaattt tcagtttggacttagtaatatcgaaaatcttgaaatatttcataaaaatc ataaattttacttCCATCGGGTCgaaaatttaagggaaaacacaaatatg ttcatagtttttccccctattaccactgggcttaataatttgattttaac tacacctccgttttgggggccccaaacctgcattttgacaaccaggggta tgctaaaaattttatcaaataaatttatgcccacaaccctctaaatcata tttcaaaactatggtcaaaattttgtattcatatcttaaaggtatctcga gaaatcgctaaaatttcaaacctccgttttgggggccattagaaaaaagc tacctatctttaagcgattgaaaaatattgttgaaattgaaaattttgaa aaagaacttccaggaaataaagtagagatgtaaaaggttttcatgcagca aaaatttttgtaaaatctcttttcctctagatttgagagaaatttcaaat ttgatcgccgttttgggggccacaccCTGTATTTAAAGAATACTTGAATA CTAGCCATTTGGAAATTTACATTTGTTAAATATCAAATGTCTGATATGAT AAAAAATTGGAAGTGTTTTTAACTTGGAATCAATTATCTTTACCAATTAC CTCAGTAAACAACAAATGTGCGGAAATTGTCCTCACCTGTTAACACGTAA TTTTTCACCTTCATAATTTGTCCTAAAGGTGGAAATAATTCGTTTCCTAT GTGTTGCATTTTGTAGAAGTGGATCATTAAAGCCACTATCTAATTATTCT TtcgtttttctattttttagtaCGACGGTATTCTGATGAAGTGA

Coding sequence (CDS) from alignment at sc0000485_pilon:2812..8655+

>XLOC_001565 ID=XLOC_001565|Name=XLOC_001565|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1050bp|location=Sequence derived from alignment at sc0000485_pilon:2812..8655+ (Clytia hemisphaerica_ch_hm2_pilon)
GACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAAA
GTTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGTG
CAGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAAA
GGACGAGAAGAAGGACAAGGCCAACCCTATGAAGGAAATCAGGATTCAAA
AGTTATGTCTCAACATTTGTGTCGGAGAAAGTGGCGACAGACTTGTCCGT
GCAGGAAAAGTGTTGGAAGCCTTAACTGGACAAACTCCAGTTTTCTCAAA
AGCACGATATACTGTCCGATCCTTTGGAATCCGTCGTAATGAAAAGATTG
CTGTCCATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAATCTTAGAAAAG
GGGCTCAAAGTCAAGGAATACGAATTACGGAGACGAAACTTCTCTGAAAC
CGGAAACTTTGGTTTTGGTATTGCAGAACACATTGATTTAGGAATCAAAT
ACGATCCCAGCATTGGTATTTATGGAATGGACTTTTATGTTGTCCTTGCA
CGACCAGGATATAATGTTGCTTACAGAAGACGCAAGAAGGCTAAAGTTGG
ATTTCCCCACCGTATCAGAAAAGCAGATTCAATGAAATGGTTTCAACACA
AACACGATATACTGTCCGATCCTTTGGAATCCGTCGTAATGAAAAGATTG
CTGTCCATTGTACCGTCAGAGGTGCCAAGGCTGAAGAAATCTTAGAAAAG
GGGCTCAAAGTCAAGGAATACGAATTACGGAGACGAAACTTCTCTGAAAC
CGGAAACTTTGGTTTTGGTATTGCAGAACACATTGATTTAGGAATCAAAT
ACGATCCCAGCATTGGTATTTATGGAATGGACTTTTATGTTGTCCTTGCA
CGACCAGGATATAATGTTGCTTACAGAAGACGCAAGAAGGCTAAAGTTGG
ATTTCCCCACCGTATCAGAAAAGCAGATTCAATGAAATGGTTTCAACACA
AAtaCGACGGTATTCTGATGAAGTGAtaCGACGGTATTCTGATGAAGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_001565XLOC_001565-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000485_pilongenomesc0000485_pilon:2812..8655 +
Properties
Property NameValue
Aaloc508-531:5821
Aaloc160-507:274
Aaloc7-156:1