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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000049_pilon:576186..581618+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_001104 ID=XLOC_001104|Name=XLOC_001104|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5433bp|location=Sequence derived from alignment at sc0000049_pilon:576186..581618+ (Clytia hemisphaerica_ch_hm2_pilon)
TGGTCGTGGTACTTGGCAAATGACATGCAATTCAGCGTAATTGCCCCATT
CATACTCATTGCTTTCTACAAGTAAGTCATACCCTAGACTAACGTCTAct
tctttctgataattctttttccttcttcttcatcttttcaatttttctat
aTGGTCATATTCCACTCTTGAATATCTtctcaacaagcacaaaaccgcta
tttgattcaaattctatcaaaaagttacagccttttttgtttccactgcT
GCAGATTTTATCGTGACAGACTTTATAATATTACGTCTCTTTTATTGATT
GATAAACGACATTTTAAGCTGTTGAACAATGAAATAGTGTACATCTTCAG
AAAGGCATCTAACTTTACTTTCACGCATCTTACTTTGATTTCCACCTTCT
CTGTAGATTGCAACAACGATTCAAGGACTCTCGTCTCGTGCACACTGGAG
CGTTCATTATCACGTTTATTTGTTGCCTAGCAACCATTCTGATTCGGATG
ATTTTACTGATTGTGCATAATTTTCCGGGACTTGTAATTACAATGACATT
CGACGATCATCCGTTCAAGTAAGTAAGGTTTTCCATCCCGAATTTAtgat
attcacgacgtaatgttttctacgggaaGACTccagtttttgccagtagt
ggcaaattttatacaacttttgtctttGCCACTACTgactaaaaccgggg
tatttccgtagaaaacattacgtcatgaatattatgaataCGGTCTTGCA
ACTTTTCCATCTGTATATTCCTCAAGTTGAGACTTTTCACCCGTCCCAAT
TCTAAGCCTTGGAAGAAAGAAAGTTCggaattttgtttgtataattttga
gctttttgttCTACGAGAGAAGATAGACTAAGTTTGCAGAATTGGTCgtt
ctttatttcaaaatgatttgAATTGACGAGTTTGAAGTTGATATTCGTCT
TGGACAACCCAGTACCTAAGCTGATTCATATCTTCTTCTTTGCCTTTGAA
GCGTGAAAGTACACTTTTTTGGGATAAGCGCCTTGGTTATTATTTTGGAA
ATTGAAGTCTTCACTTTTCACTTTCTGATCGAAATTATTGCGGGCCttat
tttgaaatagaaaaattgcTACAGCAATCAGCAACAGTTATAACATATTC
TTTTGCTGCATTCTATTGAGTGGCTGGGTAGCTCAGTGGCTAGAGCACTC
GCCTTACAATCCAAAtattgtgggttcgatccccagttatcttagattgg
gtaatctgatcaaAGCGGTAAGTTAATGGGAGCTGAGAGACtgagactcc
ctcactcccggatCCActgacagccaccagatgaatatacttacttataa
aggatttaagggctctgaccatagtgaatttttcataattgccgtattta
aaatgtgttttctgactgatgtaaccaacaaaactatggcatgttataca
ttttctgttagacaaactattcctgaatctgaaaattcaaaaattgcatt
gaacaaattgatgaaaaagaaaataaagactttTGCAAGGAAGactattt
caactttgaagagcttagtttcggcgaagtaaaaacattttgaaaatttt
ttcgcagtagatggtgtatcttttaccgaacaataaaaatttttgcggaa
aatttttgtaaatacttctttgtctcgaaatcttcaaaacagtggttttt
catcaatttttcatctggattttgcttaaaaacagtcataacatcgtttt
agaaaaattttccgcaaaatttaaaatagttcaattctttgcggacagtg
taaagaaattttgaaacaaaaaagttaattacatTAAAACTaggcacttt
ttgtaaaagagggtgatgcaacatattattaacatctttttaaagttcat
aacgtcatttttgcaattaaattctcaattactcttaagggatgcgatta
aaaagcaatttataaaggcaattctttgttaaaagtgttaaggaacctga
aatataacttttatgttcaaataccaaaatcaattttggactatggtcag
agcccttaagcttTTATAAGAAGGAACAAGAAGCCGAagcggcatgaagg
cccagctgacgtggcaataaccaaaTGTCGTTTGTATTGGGTATATACCT
TAAGAGAACCAATGTTTGCGGAAtcgtatttttgcaattttagggtTTGA
AAGAAAACATCGAATCTTAGAATCCTAATGCACACATTTTCGGCAGAGAT
TGAAATacagaacattcaaaaagttaaaaaagttcgaaaattggctgaat
gaaaaaaaacaaaaaaaacagctgCCCTGGAAGGTCATAAATGATACgca
atatatgtatataatagatttactttatgtttttgttactagtatgaaag
aaaaaatcggtttaaataaattcacaaacttcaaatgtcaaatgttgacc
gtcaaagttcagaaatattgatttaacgcgtagcatcatgaaaaacattc
caaacttattcaaatttacactcacatgagctgcattttagtatccttaa
atgacttacaacataagtttacttggaaaaattctaatgataaatgatac
gcaatatatgtatataatagatttactttatgtttttgttactagtatga
aagaaaaaatcggtttaaataaattcacaaacttcaaatgtcaaatgttg
accgccaaagttcagaaatatcaatttaacgcatagcatcatgaaaaaca
ttccaaacttattcaaatttacactcgcatgagctgtattttagtatcct
ttaatgagttacagcataagtttacttgggaaaactctctgtcaggtttg
aaaaatccagccaccgtccgtttagagcgataaatccaaaattaaccatt
ttcacggcgtagcatcatgaaaaacattccaaacttattcaaatttacac
atgagctgcattttagtatcctttaatgagttacagcataagtttacttg
aaaaaattctctgtcaggtttgaaaaatccaaccaccgaCCGTTTAGTTT
AGAGCGATAgatccaaaattgaccattttcacgggtagcatcatgaaaaa
cattccaaacttattcaaatttacacatgagctgcattttagtatccttt
aataacttacaacataagtttacgtGGAAAAATattctgtcaggtttgaa
aaatccagccaccgaccgtttagagcgataaatccaaaattgaccatctt
cacgggtagcatcatgaaaaacattccaaacttattcaaatttacacatg
agctgcatttcagtaTCCTAAAATgacttacaacataagtttacttgaaa
aaagtttctgtCAAGCTGGAAATATAAAACTCCAACATCCAAATGCTCCC
ACTTGCTCCCTGACCTGACCTGACTCTGACTCCATCCAtcttgaaaacat
taaaaaatacttttctataaagagaatgaaatttgactttactaccaatt
caatccaatatAAGAGTAGGTCAAACATTGTGCGGGTAGGCGAGGCACAA
ATTCTAAATCAGCcgctggtttagcctggacttgttaatttattgcgcgc
acaggctcCGACAAAGCGAAAATCTTTCggtcagttgctttttaaaggcc
cacttgcGCTGCGCGGCTGGGCCAATAAGGAGATAAAATACATGTGTGAT
CATAGTgatctaaagtctgttcacgataagtgtgcactcttttttctttt
acctataacttttgaaggaattcttcaatctttataagtttggtatcatt
ggaaagatattagtaagtggaacaatttgaaataaaaaagtctttaaaaa
aatcctaaaaacgaagatgaaaatgaagaagaaaaaaatgaagatcttgt
agagaagtgctataactttcattttcactggagagattctttgatcttag
gagatcatcactgtgaagaaatttcactaaaatatttattcaatataaag
ttatgatacaaagttaataagtgattgaccccaaaaaacagcagaaaaca
gcagaaaacagcgtttttagacgtcaatcagcttataactttgcttgata
tcttttgactgaatgattatttttgagaaattttttcacagtgatgatgt
tcgataatcaaggattcacttcagtgaaaatgatagctatagcacctttc
tacaagatcttcatttttttcttcttcattttcatcttcatttttagaat
ttgtttaaagatttttttatttcaaattgatccactcactaatatctttc
caatgataccaaatttataaagattgaagaattccttcaaaagttatagg
taaatgaaaaaagagtgcacacttatcgtgaatagactttacaTTACCTT
TCAGCAACGACGGACGTCAAGATAACTTATACGTCAAGCCGTACGTCCGT
TTTTCGCCGTACATCATGGGGATGTTACTTGGTTACGTTTTCTCAAGGAA
AATAGAATTGccgtcaaaattaaaaagggtGAGAACCTTTATCTCAGCta
atttttggttaaaaagaaatttctagAAAGCACTTTGAATATTTAGATAA
AACCGGGTGGGCCAAATGTAAAGTAAGTTCAATTACTTTTAAAGATGCGT
CAAGAATAAATCATGTTGCAGTTTTTTGTCCACCcagtttgataaaaaag
ttccATAACAGTCTGAACTATTGCTGATGAAATCTTCCACTCTTTCTGTA
CCCAAAgatgtcaaatttattttttgacccTCTCCCTGGAATACAGGATG
GAAGGTAGTTAGCTCAAACGTTCAATCTTATtcacattttttatgtttac
agATCTTGATCCCTATTCTTTGGGTGCTCACATTCGGTCTTGGATTTTGT
GTTGTATATGCACCATACTTTAGAGCTTATCAATTCGCTGGTGAACATTA
TAGTAAAGCTGAAAATGTGATATACGGTTCTATGAGTGAATTCACATGGG
CTTTGGTTGTCGCCTGGGTTTTATATGCTTGCCACAATGGATTTGCAGGT
CagcattttttttcatatttctcaaTCTTCCAGGTTACAGCAGTCAACTA
TCTGTGTCATTTGAAATTGCTTGTTTTCTcggtttttatttttgaaactt
ggaCAACTGTGACTCATACTACCTGGaaaaaaaGTTGCCTTAAAAATCTT
CTTGTGCAAACGATAGATATCTAGACGATTCCAGAGCCAATCTTCgcatc
aattaaaaaaaactcagCTCTGGGTGGGTACGATATCGATTGGCGTAACC
TTATTTAACCGTGCTCTTGTATGTTGATCAAATACAATGTTGTTTTTCAG
GTTTCATTAACACTTTCCTATCTTGGAAATGTTGGATCCCATTAAGTCGT
TTGACGTTTGGAGCATATCTTTTACATCCTTTG Coding sequence (CDS) from alignment at sc0000049_pilon:576186..581618+ >XLOC_001104 ID=XLOC_001104|Name=XLOC_001104|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000049_pilon:576186..581618+ (Clytia hemisphaerica_ch_hm2_pilon)
TGGTCGTGGTACTTGGCAAATGACATGCAATTCAGCGTAATTGCCCCATT
CATACTCATTGCTTTCTACAATGGTCGTGGTACTTGGCAAATGACATGCA
ATTCAGCGTAATTGCCCCATTCATACTCATTGCTTTCTACAAATTGCAAC
AACGATTCAAGGACTCTCGTCTCGTGCACACTGGAGCGTTCATTATCACG
TTTATTTGTTGCCTAGCAACCATTCTGATTCGGATGATTTTACTGATTGT
GCATAATTTTCCGGGACTTGTAATTACAATGACATTCGACGATCATCCGT
TCAAATTGCAACAACGATTCAAGGACTCTCGTCTCGTGCACACTGGAGCG
TTCATTATCACGTTTATTTGTTGCCTAGCAACCATTCTGATTCGGATGAT
TTTACTGATTGTGCATAATTTTCCGGGACTTGTAATTACAATGACATTCG
ACGATCATCCGTTCAACAACGACGGACGTCAAGATAACTTATACGTCAAG
CCGTACGTCCGTTTTTCGCCGTACATCATGGGGATGTTACTTGGTTACGT
TTTCTCAAGGAAAATAGAATTGccgtcaaaattaaaaaggCAACGACGGA
CGTCAAGATAACTTATACGTCAAGCCGTACGTCCGTTTTTCGCCGTACAT
CATGGGGATGTTACTTGGTTACGTTTTCTCAAGGAAAATAGAATTGccgt
caaaattaaaaaggATCTTGATCCCTATTCTTTGGGTGCTCACATTCGGT
CTTGGATTTTGTGTTGTATATGCACCATACTTTAGAGCTTATCAATTCGC
TGGTGAACATTATAGTAAAGCTGAAAATGTGATATACGGTTCTATGAGTG
AATTCACATGGGCTTTGGTTGTCGCCTGGGTTTTATATGCTTGCCACAAT
GGATTTGCAGATCTTGATCCCTATTCTTTGGGTGCTCACATTCGGTCTTG
GATTTTGTGTTGTATATGCACCATACTTTAGAGCTTATCAATTCGCTGGT
GAACATTATAGTAAAGCTGAAAATGTGATATACGGTTCTATGAGTGAATT
CACATGGGCTTTGGTTGTCGCCTGGGTTTTATATGCTTGCCACAATGGAT
TTGCAGGTTTCATTAACACTTTCCTATCTTGGAAATGTTGGATCCCATTA
AGTCGTTTGACGTTTGGAGCATATCTTTTACATCCTTTGGTTTCATTAAC
ACTTTCCTATCTTGGAAATGTTGGATCCCATTAAGTCGTTTGACGTTTGG
AGCATATCTTTTACATCCTTTG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049_pilon | genome | sc0000049_pilon:576186..581618 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 556-636:5353 |
| Aaloc | 358-552:4853 |
| Aaloc | 235-357:4406 |
| Aaloc | 73-231:408 |
| Aaloc | 1-69:1 |
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