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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000668_pilon:46674..50877+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_000961.3 ID=XLOC_000961.3|Name=XLOC_000961.3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4204bp|location=Sequence derived from alignment at sc0000668_pilon:46674..50877+ (Clytia hemisphaerica_ch_hm2_pilon)
GACGACTCTAACCAAGAAAGGAATCTCTACCAAGCGCTACAAGATATGAT
TGATGAACGTGTGGCTGAAAAAATGGATCCTAAACATGAATGTAAATTCG
GAGGTCTATGTAACAACGTTTACAGCTATGGATGTCATAAGTATGTGAAG
AAATGTGATGGTTCAGGATGCACAGAAATCGTAAGTAAAATTATAAAAGC
ATTTTGGTTGTGCAGCCCTTTGTAAATGTATTTTGACTACTTGATTGACG
ATCACTTTTGTATTGTTAGTGGCAGAAACTACCCAATAACATCCTATGTA
ATTTACGTTAACTGTGCCTTAAAATATAATCTAGTTTTTCCAAGCACACT
TTTCCCCGGGATTTGAGTTTAATTTCTCATATTAATTTTCGCCCATCATT
TTGCAAGATCCCATAGAAGAAAAGCGAAAGCAATACACTTATTATGAGGC
TCAAACTGCAGTTTTCCTCATGATGTCTTAAGAAACATTTTGTGAGTGGC
AATAACGGTTTAAACGATGTAGAAGCTACAACTTGATATTTTGCCAAAAG
TACTGTAAAGTACTTGCATACATTAAGGTAAATATTATGTCGCGAAATTT
AAGCATTTATATAATTCCCGTATACTTTCTGTAACTTTAGGGAACTTGCT
GGCGTCAATGTTACTCAAACACGAAGACATGGTGTAGATTAGCAGACACA
TCCAGACGTGACCAATTCTTTACTTGTCAAAAAGATTCAGATTGTGCACA
CACCAGAGAACGAGGATTGTTAGGAAAACCTGCTAAGGAAGTTTGCGAaa
tgaatttttctctttttagctcTGGGCCAATATGTCATGGATCAAATCCT
TAAATGTTTAAAGTACTTTaaagaggaagaaaatttgACTTTGTCGATGG
TTATGAACAGGATGAAATAAGCTTCTCCCGAAATTATACCTTGATTTCAA
TTCAACTTACACaataattttgtacattttctattatgttttatttaaag
tgttttttgtaatttttggaaaataactttttgaaatattattaattttt
gcaaGTATGGTTATTAGTTCAAGAAAATATAATTGTTGTGGGATATACTC
ATTTTTTGCTGTTGGTGCATGGGTTTTCCAccctttatttattttgtaaa
cTATAGCCCTAGGATATGCTTTGGTACTGTTTAATATTTGGTAAGATTTG
AGCCTCTGGATATGCTAGATCGACTCTTTTACATGGATGGCCCactaatc
taggacttttagacagtctctcgattgttttcacggagTCCACGACTAGC
CGGCTCggttatctatgaactgaaaGGAATATCGGAAGGCGCAGGGATTC
GAACTGCGAAGCCCTAGgttgagacgctgacgcctttgacgaCTTGGCCA
TCGCTGTGCTTATTTTAAGCTCATTAAAAGAACATGTAATCAATTAATAA
TCGTCTGTTCTACGATggagaaaaataactcgagaTCGTTTACATTTTTG
GCTATTGCGGGTGTGCACTTACGTTTGTACTTACattctcggtcaaaata
tattttttagttttcaaaaatttattcgaatattttaatttggcagggag
ggtttttaAACTTCCatgctatattctgagccttgtactattttgaactt
ttggatcatgACATCCCaagctcctaagtcttaagtctagcgttaaaact
cagagttaaaactttaccttcgaacctacttttgACCACTtaaaaatcga
ttgtggtttcaaaacttcccgatgaatttcccttttttcctcaaatattA
TGATCTTGATTGCAGAACACCACCATTTTTGATACAATGTACAAACTTTT
GTCCACAACCAGATTTTTCGTACCAACCTTTTAGTACAATGTACCAACTC
AAATTTAGCTACGCAATTATAGAAAGAATATTTGAGATAGAGTGGATCTT
CCTGAGAAATtataaacaccacaaatgatatTTAGGCGCCTTAAAcaaca
gttggaaagtagagttttaactctgagttttaacatgagacttaagactt
aggaccttaggatctcagggttcaaaagctcaaatttgctcgaataaggc
ttAGAAACCacaatcgaaatattcaatgaaagaaattggAAGTGCTAAAG
CAGCAATTTTcgtccgaactttaaattcttaaaaaaacgttaaaatacac
ttaaaatctcaaaatatttcgaCCGTGATTGTAGAGGCCTTAtttttttA
CATCAACAAGAAATTTTTAcgttataaaaaaaactaaaagttaGAAGAAC
AatacaaggcttcaaaaatttcggatgttcttatatataaaaacacgCGT
ACactcctttttataatagaaccttaaaatttttaatgaggTCTTGTCCA
CATTTATTTACGATTTCATcatataaaattattcttatgaaaaaggaTGT
ATTATTGATTGTCattacaatcaaagtcataatatgtgagcgaaaaagaa
aattccaaCGAAaccttacaaccacaaacgatttagAGGAACTCTAAATT
AGAGCCTTTTCATAAACTATTATAAACGCAACAACTGCCTCGTTCTGAAA
CCATTGCCAAAgtgatcatatcccttgagactTTAAGTGTTACTTTTTGA
ATAGAGTGAACTTCTTATaaactcctctgggaatcaattaccataagaat
attttaaaaatgaggtaagcgttgctcctgatgtaatttatgaaaaggtc
tattgggagACAGAAACGCttttttttGTACCACGCTGAGATGCTGTGGC
GGAGATTtgtctgagaaaaaaaaggtcATCATATGCATCTTGGGATTTGA
GCATTATGTTACATTAATATTTAATTTAGTATATTGGTGAAAAAGTTGTT
ACGGTAATTATGATGGGAATTATCAAACGTGATACATTTTATTCCGAGCA
CCTCATTggatgaattttaaaataaatgaatCCCAAATAGCTCTCATTAT
AAAGCCTCAGTATAAAAGGAGATCAAAGTAGTacatgaaaatcaaaccaa
aagcAAATTTAAAGCGAAGTACAGTGCAATAGTGAAATTGCCGACAACAG
AAAGTAAGTACAAATTTAATTGATCAGCTCTTTGAAACTACTGAATGCGA
ATAAGTTTTACCACTACACTTTTTCAATAACTCGCTAAACAACTAAAACT
CTGAATCTGAGTGACTAGATTGAAGCAAATTTTATAGTTGAGCAAAATAA
ACAGAAACTTTATTCTTCACTTTTCTTCAGGCAATGGGCATCAAAATACT
CATTTTATTCACCGCGGTTTTGGCAATTGCTTATTCCTATCGCATAAGCA
ATGACGACTCTAACCAAGAAAGGAATCTCTACCAAGCGCTACAAGATATG
ATTGATGAACGTGTGGCTGAAAAAATGGATCCTAAACATGAATGTAAATT
CGGAGGTCTATGTAACAACGTTTACAGCTATGGATGTCATAAGTATGTGA
AGAAATGTGATGGTTCAGGATGCACAGAAATCGTAAGTAAAATTATAAAA
GCATTTTGGTTGTGCAGCCTTTGTAAATGTATTTTGACTACTTGATTGAC
GATCACTTTTGTATTGTTAGTGGCAGAAACTACCCAATAACATCCTATGT
AATTTACGTTAACTGTGCCTAAAATATAATCTAGTTTTTCCAAGCACACT
TTTCCCCGGGATTTGAGTTTAATTTCTCATATTAATTTTCGCCCATCATT
TTGCAAGATCCCATAGAAGAAAAGCGAAAGCAATACACTTATTATGAGGC
TCAAACTGCAGTTTTCCTCATGATGTCTTAAGAAACATTTTGTGAGTGGC
AATAACGGTTTTAAACGATGTAGAAGCTACAACTTGATATTTTGCCAAAA
GTACTGTAAAGTACTTGCATACATTAAGGTAAATATTATGTCGCGAAATT
TAAGCATTTATATAATTCCCGTATACTTTCTGTAACTTTAGGGAACTTGC
TGGCGTCAATGTTACTCAAACACGAAGACATGGTGTAGATTAGCAGACAC
ATCCAGACGTGACCAATTCTTTACTTGTCAAAAAGATTCAGATTGTGCAC
ACACCAGAGAACGAGGATTGTTAGGAAAACCTGCTAAGGAAGTTTGCGAa
atgaatttttctctttttagctcTGGGCCAATATGTCATGGATCAAATCC
TTAA Coding sequence (CDS) from alignment at sc0000668_pilon:46674..50877+ >XLOC_000961.3 ID=XLOC_000961.3|Name=XLOC_000961.3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=788bp|location=Sequence derived from alignment at sc0000668_pilon:46674..50877+ (Clytia hemisphaerica_ch_hm2_pilon)
GACGACTCTAACCAAGAAAGGAATCTCTACCAAGCGCTACAAGATATGAT
TGATGAACGTGTGGCTGAAAAAATGGATCCTAAACATGAATGTAAATTCG
GAGGTCTATGTAACAACGTTTACAGCTATGGATGTCATAAGACGACTCTA
ACCAAGAAAGGAATCTCTACCAAGCGCTACAAGATATGATTGATGAACGT
GTGGCTGAAAAAATGGATCCTAAACATGAATGTAAATTCGGAGGTCTATG
TAACAACGTTTACAGCTATGGATGTCATAAAGTATGTGAAGAAATGTGAT
GGTTCAGGATGCACAGAAATCAGTATGTGAAGAAATGTGATGGTTCAGGA
TGCACAGAAATCGGAACTTGCTGGCGTCAATGTTACTCAAACACGAAGAC
ATGGTGTAGATTAGCAGACACATCCAGACGTGACCAATTCTTTACTTGTC
AAAAAGATTCAGATTGTGCACACACCAGAGAACGAGGATTGTTAGGAAAA
CCTGCTAAGGAAGTTTGCGAaatgaatttttctctttttagctcTGGGCC
AATATGTCATGGATCAAATCCTTAAGGAACTTGCTGGCGTCAATGTTACT
CAAACACGAAGACATGGTGTAGATTAGCAGACACATCCAGACGTGACCAA
TTCTTTACTTGTCAAAAAGATTCAGATTGTGCACACACCAGAGAACGAGG
ATTGTTAGGAAAACCTGCTAAGGAAGTTTGCGAaatgaatttttctcttt
ttagctcTGGGCCAATATGTCATGGATCAAATCCTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000668_pilon | genome | sc0000668_pilon:46674..50877 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 181-393:3992 |
| Aaloc | 142-180:3494 |
| Aaloc | 79-138:80 |
| Aaloc | 1-78:1 |
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